MEG-01 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

280 genes with high or low copy number in MEG-01 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
PPAPDC3 phosphatidic acid phosphatase type 2 domain containing 3 4.51153
RIPPLY3 ripply transcriptional repressor 3 4.51153
SIM2 single-minded family bHLH transcription factor 2 4.51153
DSCR9 Down syndrome critical region 9 (non-protein coding) 4.51153
EVA1C eva-1 homolog C (C. elegans) 4.51153
LINC00160 long intergenic non-protein coding RNA 160 4.51153
LOC100506403 uncharacterized LOC100506403 4.51153
SYNJ1 synaptojanin 1 4.51153
CLIC6 chloride intracellular channel 6 4.51153
DSCR10 Down syndrome critical region 10 (non-protein coding) 4.51153
URB1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) 4.51153
PAXBP1 PAX3 and PAX7 binding protein 1 4.51153
DSCR3 Down syndrome critical region 3 4.51153
DSCR8 Down syndrome critical region 8 4.51153
TCP10L t-complex 10-like 4.51153
LINC00159 long intergenic non-protein coding RNA 159 4.51153
LOC100133286 uncharacterized LOC100133286 4.51153
DSCR4 Down syndrome critical region 4 4.51153
MRAP melanocortin 2 receptor accessory protein 4.51153
SNORD62A small nucleolar RNA, C/D box 62A 4.51153
PAXBP1-AS1 PAXBP1 antisense RNA 1 4.51153
POMT1 protein-O-mannosyltransferase 1 4.51153
CBR3 carbonyl reductase 3 4.51153
HLCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) 4.51153
KCNJ6 potassium channel, inwardly rectifying subfamily J, member 6 4.51153
URB1-AS1 URB1 antisense RNA 1 (head to head) 4.51153
KCNJ15 potassium channel, inwardly rectifying subfamily J, member 15 4.51153
C21ORF59 chromosome 21 open reading frame 59 4.51153
DOPEY2 dopey family member 2 4.51153
C21ORF62-AS1 C21orf62 antisense RNA 1 4.51153
PRRC2B proline-rich coiled-coil 2B 4.51153
HUNK hormonally up-regulated Neu-associated kinase 4.51153
MIS18A MIS18 kinetochore protein A 4.51153
PIGP phosphatidylinositol glycan anchor biosynthesis, class P 4.51153
CBR3-AS1 CBR3 antisense RNA 1 4.51153
TTC3 tetratricopeptide repeat domain 3 4.51153
FAM78A family with sequence similarity 78, member A 3.12177
RCAN1 regulator of calcineurin 1 2.93899
NUP214 nucleoporin 214kDa 2.93899
ZMYM6 zinc finger, MYM-type 6 2.76305
LYZL2 lysozyme-like 2 2.64759
MTPAP mitochondrial poly(A) polymerase 2.64759
FSIP2 fibrous sheath interacting protein 2 2.64759
ZSWIM2 zinc finger, SWIM-type containing 2 2.64759
MAP3K8 mitogen-activated protein kinase kinase kinase 8 2.64759
KIAA1462 KIAA1462 2.59653
LYZL1 lysozyme-like 1 2.49065
BAMBI BMP and activin membrane-bound inhibitor 2.49065
WAC WW domain containing adaptor with coiled-coil 2.49065
PTCHD3P1 patched domain containing 3 pseudogene 1 2.49065
LINC00837 long intergenic non-protein coding RNA 837 2.49065
MIR5586 microRNA 5586 2.49065
WAC-AS1 WAC antisense RNA 1 (head to head) 2.49065
TIGD5 tigger transposable element derived 5 2.41451
MAFA v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog A 2.41451
RHPN1 rhophilin, Rho GTPase binding protein 1 2.41451
EEF1D eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 2.41451
ZC3H3 zinc finger CCCH-type containing 3 2.41451
TSTA3 tissue specific transplantation antigen P35B 2.41451
PYCRL pyrroline-5-carboxylate reductase-like 2.41451
GSDMD gasdermin D 2.41451
RHPN1-AS1 RHPN1 antisense RNA 1 (head to head) 2.41451
MROH6 maestro heat-like repeat family member 6 2.41451
TOP1MT topoisomerase (DNA) I, mitochondrial 2.39327
GLI4 GLI family zinc finger 4 2.39327
ZNF696 zinc finger protein 696 2.39327
GML glycosylphosphatidylinositol anchored molecule like 2.39327
ZNF623 zinc finger protein 623 2.39327
ZFP41 ZFP41 zinc finger protein 2.39327
GPIHBP1 glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 2.39327
CYP11B1 cytochrome P450, family 11, subfamily B, polypeptide 1 2.39327
LOC100133669 uncharacterized LOC100133669 2.36889
MROH5 maestro heat-like repeat family member 5 2.36889
C8ORF31 chromosome 8 open reading frame 31 2.36889
CDC42P3 cell division cycle 42 pseudogene 3 2.36889
PTP4A3 protein tyrosine phosphatase type IVA, member 3 2.36889
LY6E lymphocyte antigen 6 complex, locus E 2.36889
LY6H lymphocyte antigen 6 complex, locus H 2.35236
GPR20 G protein-coupled receptor 20 2.35236
SLC45A4 solute carrier family 45, member 4 2.30944
CHRAC1 chromatin accessibility complex 1 2.25904
DENND3 DENN/MADD domain containing 3 2.25904
AGO2 argonaute RISC catalytic component 2 2.24845
KCNK9 potassium channel, two pore domain subfamily K, member 9 2.24139
TRAPPC9 trafficking protein particle complex 9 2.2355
PTK2 protein tyrosine kinase 2 2.23324
COL22A1 collagen, type XXII, alpha 1 2.22917
MIR30D microRNA 30d 2.22633
FAM135B family with sequence similarity 135, member B 2.22633
MIR30B microRNA 30b 2.22633
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 2.22558
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2.22558
LOC286094 2.22558
ZFAT-AS1 ZFAT antisense RNA 1 2.22558
ZFAT zinc finger and AT hook domain containing 2.22291
HHLA1 HERV-H LTR-associating 1 2.21258
COLEC10 collectin sub-family member 10 (C-type lectin) 2.21096
OC90 otoconin 90 2.21096
EFR3A EFR3 homolog A (S. cerevisiae) 2.21096
MAL2 mal, T-cell differentiation protein 2 (gene/pseudogene) 2.21096
TNFRSF11B tumor necrosis factor receptor superfamily, member 11b 2.21096
SAMD12-AS1 SAMD12 antisense RNA 1 2.20309
ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 2.20309
NOV nephroblastoma overexpressed 2.20309
MIR5194 microRNA 5194 2.20053
ASAP1-IT1 ASAP1 intronic transcript 1 2.20053
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 2.19863
FAM49B family with sequence similarity 49, member B 2.19863
ADCY8 adenylate cyclase 8 (brain) 2.19301
GSDMC gasdermin C 2.18778
SAMD12 sterile alpha motif domain containing 12 2.18778
ZNF572 zinc finger protein 572 2.16564
SQLE squalene epoxidase 2.16459
KIAA0196 KIAA0196 2.16459
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) 2.16307
TRIB1 tribbles pseudokinase 1 2.16176
CCDC26 CCDC26 long non-coding RNA 2.16091
LINC00861 long intergenic non-protein coding RNA 861 2.15967
SNORA25 small nucleolar RNA, H/ACA box 25 2.15953
FAM84B family with sequence similarity 84, member B 2.15847
LIPI lipase, member I 2.15766
RBM11 RNA binding motif protein 11 2.15726
RUNX1 runt-related transcription factor 1 2.15529
DSCAM-AS1 DSCAM antisense RNA 1 2.15402
DSCAM-IT1 DSCAM intronic transcript 1 2.15402
MIR4760 microRNA 4760 2.15402
RUNX1-IT1 RUNX1 intronic transcript 1 2.15402
ETS2 v-ets avian erythroblastosis virus E26 oncogene homolog 2 2.15316
SH3BGR SH3 domain binding glutamate-rich protein 2.15316
KRTAP24-1 keratin associated protein 24-1 2.15316
KRTAP27-1 keratin associated protein 27-1 2.15316
LINC00114 long intergenic non-protein coding RNA 114 2.15316
CLDN8 claudin 8 2.15316
KRTAP23-1 keratin associated protein 23-1 2.15316
IGSF5 immunoglobulin superfamily, member 5 2.15316
ERG v-ets avian erythroblastosis virus E26 oncogene homolog 2.15316
KRTAP25-1 keratin associated protein 25-1 2.15316
GRIK1-AS1 GRIK1 antisense RNA 1 2.15316
CLDN14 claudin 14 2.15316
LINC00307 long intergenic non-protein coding RNA 307 2.15316
B3GALT5 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 2.15316
B3GALT5-AS1 B3GALT5 antisense RNA 1 2.15316
CLDN17 claudin 17 2.15316
KRTAP26-1 keratin associated protein 26-1 2.15316
KRTAP13-2 keratin associated protein 13-2 2.15316
MIR4327 microRNA 4327 2.15316
PCP4 Purkinje cell protein 4 2.15316
LINC01549 long intergenic non-protein coding RNA 1549 2.14746
CXADR coxsackie virus and adenovirus receptor 2.14746
ABCC13 ATP-binding cassette, sub-family C (CFTR/MRP), member 13, pseudogene 2.14731
MIRLET7C microRNA let-7c 2.14731
BTG3 BTG family, member 3 2.14731
C21ORF91-OT1 C21orf91 overlapping transcript 1 2.14731
C21ORF91 chromosome 21 open reading frame 91 2.14731
CHODL-AS1 CHODL antisense RNA 1 2.14731
ANKRD20A11P ankyrin repeat domain 20 family, member A11, pseudogene 2.14731
MIR99A microRNA 99a 2.14731
HSPA13 heat shock protein 70kDa family, member 13 2.14731
MIR125B2 microRNA 125b-2 2.14731
PPP2R3B protein phosphatase 2, regulatory subunit B'', beta 2.14626
CD99 CD99 molecule 2.14588
LINC00685 long intergenic non-protein coding RNA 685 2.14588
AKAP17A A kinase (PRKA) anchor protein 17A 2.14588
P2RY8 purinergic receptor P2Y, G-protein coupled, 8 2.14588
MIR3690 microRNA 3690 2.14588
CD99P1 CD99 molecule pseudogene 1 2.14588
CRLF2 cytokine receptor-like factor 2 2.14588
PLCXD1 phosphatidylinositol-specific phospholipase C, X domain containing 1 2.14588
ASMTL-AS1 ASMTL antisense RNA 1 2.14588
SLC25A6 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 2.14588
GTPBP6 GTP binding protein 6 (putative) 2.14588
DHRSX dehydrogenase/reductase (SDR family) X-linked 2.14588
CSF2RA colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) 2.14588
IL3RA interleukin 3 receptor, alpha (low affinity) 2.14588
ASMTL acetylserotonin O-methyltransferase-like 2.14588
LINC00102 long intergenic non-protein coding RNA 102 2.14588
SHOX short stature homeobox 2.14588
ZBED1 zinc finger, BED-type containing 1 2.14588
ASMT acetylserotonin O-methyltransferase 2.14588
NCAM2 neural cell adhesion molecule 2 2.14311
GRIK1 glutamate receptor, ionotropic, kainate 1 2.14116
LINC00308 long intergenic non-protein coding RNA 308 2.14116
APP amyloid beta (A4) precursor protein 2.14116
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 2.14116
LINC00317 long intergenic non-protein coding RNA 317 2.14116
BACH1 BTB and CNC homology 1, basic leucine zipper transcription factor 1 2.14116
LINC00320 long intergenic non-protein coding RNA 320 2.14116
D21S2088E D21S2088E 2.14116
GRIK1-AS2 GRIK1 antisense RNA 2 2.14116
RNU6-67P RNA, U6 small nuclear 67, pseudogene 2.14116
USP25 ubiquitin specific peptidase 25 2.1368
WLS wntless Wnt ligand secretion mediator 2.12931
PTGER3 prostaglandin E receptor 3 (subtype EP3) 2.12931
WDR78 WD repeat domain 78 2.12703
GADD45A growth arrest and DNA-damage-inducible, alpha 2.12703
LINC00314 long intergenic non-protein coding RNA 314 2.12703
ZRANB2 zinc finger, RAN-binding domain containing 2 2.12703
GNG12-AS1 GNG12 antisense RNA 1 2.12703
SERBP1 SERPINE1 mRNA binding protein 1 2.12703
IL12RB2 interleukin 12 receptor, beta 2 2.12703
MIER1 mesoderm induction early response 1, transcriptional regulator 2.12703
SLC35D1 solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1 2.12703
LINC00189 long intergenic non-protein coding RNA 189 2.12703
ZRANB2-AS1 ZRANB2 antisense RNA 1 2.12703
MIR186 microRNA 186 2.12703
DEPDC1 DEP domain containing 1 2.12703
GNG12 guanine nucleotide binding protein (G protein), gamma 12 2.12703
MIR1262 microRNA 1262 2.12703
IL23R interleukin 23 receptor 2.12703
MAP3K7CL MAP3K7 C-terminal like 2.12703
C1ORF141 chromosome 1 open reading frame 141 2.12703
RPE65 retinal pigment epithelium-specific protein 65kDa 2.12703
DIRAS3 DIRAS family, GTP-binding RAS-like 3 2.12703
CCT8 chaperonin containing TCP1, subunit 8 (theta) 2.12703
LINC00113 long intergenic non-protein coding RNA 113 2.12703
NRIP1 nuclear receptor interacting protein 1 2.12587
LOC388813 uncharacterized protein ENSP00000383407-like 2.12579
SAMSN1-AS1 SAMSN1 antisense RNA 1 2.12579
SAMSN1 SAM domain, SH3 domain and nuclear localization signals 1 2.12572
CHODL chondrolectin 2.12564
TMPRSS15 transmembrane protease, serine 15 2.12564
USP16 ubiquitin specific peptidase 16 2.12225
LRRC7 leucine rich repeat containing 7 2.12225
RWDD2B RWD domain containing 2B 2.12225
SRSF11 serine/arginine-rich splicing factor 11 2.12225
ZMYM6NB ZMYM6 neighbor 2.12225
ZRANB2-AS2 ZRANB2 antisense RNA 2 (head to head) 2.12225
N6AMT1 N-6 adenine-specific DNA methyltransferase 1 (putative) 2.12225
HHLA3 HERV-H LTR-associating 3 2.12225
ANKRD13C ankyrin repeat domain 13C 2.12225
PIN1P1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 2.12225
LRRC40 leucine rich repeat containing 40 2.12225
SNORA62 small nucleolar RNA, H/ACA box 62 2.12225
CYYR1 cysteine/tyrosine-rich 1 2.12225
LOC653160 uncharacterized LOC653160 2.12225
LINC00161 long intergenic non-protein coding RNA 161 2.12225
ITGAV integrin, alpha V 2.11435
ZC3H15 zinc finger CCCH-type containing 15 2.11167
FAM171B family with sequence similarity 171, member B 2.11167
LTN1 listerin E3 ubiquitin protein ligase 1 2.10992
SNORD74 small nucleolar RNA, C/D box 74 2.10607
MIR604 microRNA 604 2.10177
MIR938 microRNA 938 2.10177
SVIL supervillin 2.09529
PCAT1 prostate cancer associated transcript 1 (non-protein coding) 2.08634
CYP11B2 cytochrome P450, family 11, subfamily B, polypeptide 2 2.08021
MIR1206 microRNA 1206 2.07612
MIR1205 microRNA 1205 2.07136
MIR1208 microRNA 1208 2.07136
MIR1207 microRNA 1207 2.07136
TMEM75 transmembrane protein 75 2.06401
CCAT1 colon cancer associated transcript 1 (non-protein coding) 2.0614
NDRG1 N-myc downstream regulated 1 2.05864
POU5F1B POU class 5 homeobox 1B 2.05836
SLA Src-like-adaptor 2.05778
WISP1 WNT1 inducible signaling pathway protein 1 2.05778
HPYR1 Helicobacter pylori responsive 1 (non-protein coding) 2.05635
LRRC6 leucine rich repeat containing 6 2.0557
PHF20L1 PHD finger protein 20-like 1 2.05441
TMEM71 transmembrane protein 71 2.05422
TG thyroglobulin 2.054
KCNQ3 potassium channel, voltage gated KQT-like subfamily Q, member 3 2.054
IGHG1 immunoglobulin heavy constant gamma 1 (G1m marker) 2.04842
IGHE immunoglobulin heavy constant epsilon 2.04816
IGHD immunoglobulin heavy constant delta 2.04803
ADAM6 ADAM metallopeptidase domain 6 (pseudogene) 2.04767
KIAA0125 KIAA0125 2.04731
LINC00226 long intergenic non-protein coding RNA 226 2.04712
MIR1204 microRNA 1204 2.04661
PVT1 Pvt1 oncogene (non-protein coding) 2.04585

low copy number

Symbol Name Standardized Value
G3BP1 GTPase activating protein (SH3 domain) binding protein 1 -3.24687
EBLN2 endogenous Bornavirus-like nucleoprotein 2 -3.14331
PPP4R2 protein phosphatase 4, regulatory subunit 2 -3.06578
DLEU2 deleted in lymphocytic leukemia 2 (non-protein coding) -3.05881
UGT2B28 UDP glucuronosyltransferase 2 family, polypeptide B28 -3.04299
DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) -3.00044
PSG4 pregnancy specific beta-1-glycoprotein 4 -2.75301
HCG4B HLA complex group 4B (non-protein coding) -2.75184
LOC284344 uncharacterized LOC284344 -2.74526
BTNL3 butyrophilin-like 3 -2.72661