MG-63 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

174 genes with high or low copy number in MG-63 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
MARCH1 membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase 4.51153
ANP32C acidic (leucine-rich) nuclear phosphoprotein 32 family, member C 4.51153
AARS2 alanyl-tRNA synthetase 2, mitochondrial 3.12177
TMEM151B transmembrane protein 151B 3.12177
TCTE1 t-complex-associated-testis-expressed 1 3.12177
TMEM63B transmembrane protein 63B 3.12177
MRPL14 mitochondrial ribosomal protein L14 3.12177
SLC35B2 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2 3.12177
SLC29A1 solute carrier family 29 (equilibrative nucleoside transporter), member 1 3.12177
MIR4642 microRNA 4642 3.12177
VEGFC vascular endothelial growth factor C 3.12177
UHRF1BP1 UHRF1 binding protein 1 3.12177
CDC5L cell division cycle 5-like 3.12177
NFKBIE nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon 3.12177
SPATS1 spermatogenesis associated, serine-rich 1 3.12177
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 3.12177
TAF11 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa 3.12177
CAPN11 calpain 11 3.12177
SNRPC small nuclear ribonucleoprotein polypeptide C 3.12177
GRXCR1 glutaredoxin, cysteine rich 1 3.12177
MIR4647 microRNA 4647 3.12177
ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A 2.93899
TCP11 t-complex 11, testis-specific 2.93899
RREB1 ras responsive element binding protein 1 2.93899
LY86 lymphocyte antigen 86 2.93899
MIR4449 microRNA 4449 2.76305
DANCR differentiation antagonizing non-protein coding RNA 2.76305
SCUBE3 signal peptide, CUB domain, EGF-like 3 2.76305
RASL11B RAS-like, family 11, member B 2.76305
MIR586 microRNA 586 2.76305
SNORA26 small nucleolar RNA, H/ACA box 26 2.76305
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) 2.76305
LOC152578 uncharacterized LOC152578 2.76305
ERVMER34-1 endogenous retrovirus group MER34, member 1 2.76305
SGCB sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) 2.64759
LNX1 ligand of numb-protein X 1, E3 ubiquitin protein ligase 2.64759
LRRC66 leucine rich repeat containing 66 2.64759
FIP1L1 factor interacting with PAPOLA and CPSF1 2.64759
USP46 ubiquitin specific peptidase 46 2.64759
DCUN1D4 DCN1, defective in cullin neddylation 1, domain containing 4 2.64759
LNX1-AS1 LNX1 antisense RNA 1 2.64759
LNX1-AS2 LNX1 antisense RNA 2 2.64759
GLO1 glyoxalase I 2.59653
TMEM14A transmembrane protein 14A 2.59653
LOC730101 uncharacterized LOC730101 2.59653
SAYSD1 SAYSVFN motif domain containing 1 2.59653
DNAH8 dynein, axonemal, heavy chain 8 2.59653
SCFD2 sec1 family domain containing 2 2.59653
MIR3125 microRNA 3125 2.59653
MIR206 microRNA 206 2.59653
LOC100506474 uncharacterized LOC100506474 2.59653
TRAM2-AS1 TRAM2 antisense RNA 1 (head to head) 2.59653
GLP1R glucagon-like peptide 1 receptor 2.59653
LOC100131047 uncharacterized LOC100131047 2.59653
SPATA18 spermatogenesis associated 18 2.59653
KCNK5 potassium channel, two pore domain subfamily K, member 5 2.59653
PAQR8 progestin and adipoQ receptor family member VIII 2.59653
MIR133B microRNA 133b 2.59653
TRAM2 translocation associated membrane protein 2 2.59653
PKHD1 polycystic kidney and hepatic disease 1 (autosomal recessive) 2.49065
TRIB2 tribbles pseudokinase 2 2.49065
SNAPC3 small nuclear RNA activating complex, polypeptide 3, 50kDa 2.49065
IL17A interleukin 17A 2.49065
IL17F interleukin 17F 2.49065
MIR4262 microRNA 4262 2.49065
MCM3 minichromosome maintenance complex component 3 2.49065
LPIN1 lipin 1 2.49065
TTC39B tetratricopeptide repeat domain 39B 2.49065
EFHC1 EF-hand domain (C-terminal) containing 1 2.49065
NTSR2 neurotensin receptor 2 2.49065
RPL21P44 ribosomal protein L21 pseudogene 44 2.44392
CHIC2 cysteine-rich hydrophobic domain 2 2.44392
GSX2 GS homeobox 2 2.44392
PDGFRA platelet-derived growth factor receptor, alpha polypeptide 2.41451
EMC2 ER membrane protein complex subunit 2 2.2355
EBAG9 estrogen receptor binding site associated, antigen, 9 2.23324
PKHD1L1 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 2.23324
TMEM74 transmembrane protein 74 2.23078
COL22A1 collagen, type XXII, alpha 1 2.22917
MIR30B microRNA 30b 2.22633
MIR30D microRNA 30d 2.22633
FAM135B family with sequence similarity 135, member B 2.22633
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 2.22558
ZFAT-AS1 ZFAT antisense RNA 1 2.22558
LOC286094 2.22558
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2.22558
AARD alanine and arginine rich domain containing protein 2.22291
ZFAT zinc finger and AT hook domain containing 2.22291
MED30 mediator complex subunit 30 2.21258
SLC30A8 solute carrier family 30 (zinc transporter), member 8 2.21258
HHLA1 HERV-H LTR-associating 1 2.21258
EFR3A EFR3 homolog A (S. cerevisiae) 2.21096
OC90 otoconin 90 2.21096
EXT1 exostosin glycosyltransferase 1 2.20053
ADCY8 adenylate cyclase 8 (brain) 2.19301
SAMD12 sterile alpha motif domain containing 12 2.18778
HAS2-AS1 HAS2 antisense RNA 1 2.16947
HAS2 hyaluronan synthase 2 2.16947
SNORA31 small nucleolar RNA, H/ACA box 31 2.16564
CCDC26 CCDC26 long non-coding RNA 2.16091
IFNE interferon, epsilon 2.15921
IFNA1 interferon, alpha 1 2.15915
IFNA8 interferon, alpha 8 2.15913
IFNA2 interferon, alpha 2 2.1591
IFNA13 interferon, alpha 13 2.15909
IFNA6 interferon, alpha 6 2.15905
KLHL9 kelch-like family member 9 2.15903
IFNA5 interferon, alpha 5 2.15899
IFNA22P interferon, alpha 22, pseudogene 2.15895
IFNA14 interferon, alpha 14 2.15889
IFNA7 interferon, alpha 7 2.15889
IFNA10 interferon, alpha 10 2.15889
IFNA17 interferon, alpha 17 2.15886
IFNA16 interferon, alpha 16 2.15886
IFNA4 interferon, alpha 4 2.1588
IFNA21 interferon, alpha 21 2.15871
FAM84B family with sequence similarity 84, member B 2.15847
IFNW1 interferon, omega 1 2.15839
IFNB1 interferon, beta 1, fibroblast 2.15832
ETFDH electron-transferring-flavoprotein dehydrogenase 2.15316
LOC340017 uncharacterized LOC340017 2.15316
PPID peptidylprolyl isomerase D 2.15316
C4ORF46 chromosome 4 open reading frame 46 2.15316
GRIA2 glutamate receptor, ionotropic, AMPA 2 2.15316
HACD4 3-hydroxyacyl-CoA dehydratase 4 2.15203
FSTL5 follistatin-like 5 2.14311
FAM198B family with sequence similarity 198, member B 2.14116
RXFP1 relaxin/insulin-like family peptide receptor 1 2.14116
NEIL3 nei endonuclease VIII-like 3 (E. coli) 2.14116
FOCAD focadhesin 2.13951
GLRB glycine receptor, beta 2.12703
GPM6A glycoprotein M6A 2.12703
MLLT3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 2.12599
MIR4473 microRNA 4473 2.1258
C9ORF92 chromosome 9 open reading frame 92 2.09727
PSIP1 PC4 and SFRS1 interacting protein 1 2.09628
FREM1 FRAS1 related extracellular matrix 1 2.09431
LOC389705 chromosome 4 open reading frame 27 pseudogene 2.09431
CER1 cerberus 1, DAN family BMP antagonist 2.09431
BNC2 basonuclin 2 2.09316
CCDC171 coiled-coil domain containing 171 2.09205
NFIB nuclear factor I/B 2.08856
LINC00583 long intergenic non-protein coding RNA 583 2.08839
ZDHHC21 zinc finger, DHHC-type containing 21 2.08781
PCAT1 prostate cancer associated transcript 1 (non-protein coding) 2.08634
LURAP1L leucine rich adaptor protein 1-like 2.08441
TYRP1 tyrosinase-related protein 1 2.08125
MPDZ multiple PDZ domain protein 2.08116
MIR1206 microRNA 1206 2.07612
MIR1205 microRNA 1205 2.07136
MIR1207 microRNA 1207 2.07136
MIR1208 microRNA 1208 2.07136
TMEM75 transmembrane protein 75 2.06401
CCAT1 colon cancer associated transcript 1 (non-protein coding) 2.0614
NDRG1 N-myc downstream regulated 1 2.05864
POU5F1B POU class 5 homeobox 1B 2.05836
WISP1 WNT1 inducible signaling pathway protein 1 2.05778
MIR2053 microRNA 2053 2.05778
CSMD3 CUB and Sushi multiple domains 3 2.05477
KCNQ3 potassium channel, voltage gated KQT-like subfamily Q, member 3 2.054
MIR1204 microRNA 1204 2.04661
PVT1 Pvt1 oncogene (non-protein coding) 2.04585

low copy number

Symbol Name Standardized Value
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 -3.38669
RPL13AP17 ribosomal protein L13a pseudogene 17 -3.32901
MIR548AU microRNA 548au -3.32901
MTRNR2L1 MT-RNR2-like 1 -2.98179
MIR4509-1 microRNA 4509-1 -2.86134
MIR876 microRNA 876 -2.84034
MIR873 microRNA 873 -2.83605
ZNF737 zinc finger protein 737 -2.82043
ZNF826P zinc finger protein 826, pseudogene -2.81247
LINGO2 leucine rich repeat and Ig domain containing 2 -2.79933
IZUMO3 IZUMO family member 3 -2.77409
ELAVL2 ELAV like neuron-specific RNA binding protein 2 -2.74526