MIA-PACA-2 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description A immortal human cell line cell that has the characteristics: Human cell line derived from pancreatic cancer. TKG0227(Deposited from Tohoku Univ.) (Cell Line Ontology, CLO_0050101)
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Genes

54 genes with high or low copy number in MIA-PACA-2 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value

low copy number

Symbol Name Standardized Value
MIR4466 microRNA 4466 -3.83684
ARID1B AT rich interactive domain 1B (SWI1-like) -3.83684
TUSC3 tumor suppressor candidate 3 -3.7119
ARHGEF10 Rho guanine nucleotide exchange factor (GEF) 10 -3.50611
MIR596 microRNA 596 -3.50611
CLN8 ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation) -3.50611
IQCJ-SCHIP1 IQCJ-SCHIP1 readthrough -3.42115
MFSD1 major facilitator superfamily domain containing 1 -3.40381
IQCJ IQ motif containing J -3.40381
CSMD3 CUB and Sushi multiple domains 3 -3.13095
LAMA2 laminin, alpha 2 -3.11641
SNORA37 small nucleolar RNA, H/ACA box 37 -3.00478
MBD2 methyl-CpG binding domain protein 2 -3.00478
DCC DCC netrin 1 receptor -2.93929
SGCZ sarcoglycan, zeta -2.93416
NDP Norrie disease (pseudoglioma) -2.88947
FUNDC1 FUN14 domain containing 1 -2.87802
MAOA monoamine oxidase A -2.87269
EFHC2 EF-hand domain (C-terminal) containing 2 -2.87269
USP17L2 ubiquitin specific peptidase 17-like family member 2 -2.86624
MAOB monoamine oxidase B -2.86559
USP17L7 ubiquitin specific peptidase 17-like family member 7 -2.86003
DUSP21 dual specificity phosphatase 21 -2.85574
HLA-H major histocompatibility complex, class I, H (pseudogene) -2.8504
HLA-J major histocompatibility complex, class I, J (pseudogene) -2.8473
FAM86DP family with sequence similarity 86, member D, pseudogene -2.84592
KDM6A lysine (K)-specific demethylase 6A -2.84592
OR52N5 olfactory receptor, family 52, subfamily N, member 5 -2.84224
MLLT3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 -2.81841
MIR4474 microRNA 4474 -2.81559
MIR491 microRNA 491 -2.80395
SNORA30 small nucleolar RNA, H/ACA box 30 -2.79995
FOCAD focadhesin -2.7828
HACD4 3-hydroxyacyl-CoA dehydratase 4 -2.78237
IFNB1 interferon, beta 1, fibroblast -2.77588
IFNW1 interferon, omega 1 -2.77446
IFNA21 interferon, alpha 21 -2.77074
IFNA4 interferon, alpha 4 -2.7694
IFNA17 interferon, alpha 17 -2.76453
IFNA16 interferon, alpha 16 -2.76453
IFNA7 interferon, alpha 7 -2.75972
IFNA10 interferon, alpha 10 -2.75972
IFNA14 interferon, alpha 14 -2.75972
IFNA22P interferon, alpha 22, pseudogene -2.75555
HCG4B HLA complex group 4B (non-protein coding) -2.75184
IFNA5 interferon, alpha 5 -2.74973
KLHL9 kelch-like family member 9 -2.74526
IFNA6 interferon, alpha 6 -2.74032
IFNA13 interferon, alpha 13 -2.73798
IFNA2 interferon, alpha 2 -2.73608
OR52N1 olfactory receptor, family 52, subfamily N, member 1 -2.73524
IFNA8 interferon, alpha 8 -2.73024
IFNA1 interferon, alpha 1 -2.72828
IFNE interferon, epsilon -2.72466