MJ Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

163 genes with high or low copy number in MJ relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
LAP3 leucine aminopeptidase 3 2.74466
LINC00298 long intergenic non-protein coding RNA 298 2.54098
PIGN phosphatidylinositol glycan anchor biosynthesis, class N 2.04254
LEF1 lymphoid enhancer-binding factor 1 1.90139
ERBB3 erb-b2 receptor tyrosine kinase 3 1.81823
TIAM2 T-cell lymphoma invasion and metastasis 2 1.78717
MCEE methylmalonyl CoA epimerase 1.58905
NRG1 neuregulin 1 1.55297
ULK4 unc-51 like kinase 4 1.55115
C2ORF78 chromosome 2 open reading frame 78 1.52674
ACTG2 actin, gamma 2, smooth muscle, enteric 1.52674
DUSP11 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) 1.52674
STAMBP STAM binding protein 1.52674
TPRKB TP53RK binding protein 1.52674
DGUOK deoxyguanosine kinase 1.52618
TET3 tet methylcytosine dioxygenase 3 1.52488
MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 1.52488
MOB1A MOB kinase activator 1A 1.52478
BOLA3 bolA family member 3 1.52478
BOLA3-AS1 BOLA3 antisense RNA 1 (head to head) 1.52478
WDR92 WD repeat domain 92 1.51913
PNO1 partner of NOB1 homolog (S. cerevisiae) 1.51885
TACR1 tachykinin receptor 1 1.51849
HK2 hexokinase 2 1.51803
SEMA4F sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F 1.51795
EGR4 early growth response 4 1.51594
RAB11FIP5 RAB11 family interacting protein 5 (class I) 1.51542
POLE4 polymerase (DNA-directed), epsilon 4, accessory subunit 1.51378
LBX2-AS1 LBX2 antisense RNA 1 1.51252
TLX2 T-cell leukemia homeobox 2 1.51252
PCGF1 polycomb group ring finger 1 1.51252
LBX2 ladybird homeobox 2 1.51252
TTC31 tetratricopeptide repeat domain 31 1.51242
MOGS mannosyl-oligosaccharide glucosidase 1.51242
CCDC142 coiled-coil domain containing 142 1.51242
WBP1 WW domain binding protein 1 1.51242
MRPL53 mitochondrial ribosomal protein L53 1.51242
DQX1 DEAQ box RNA-dependent ATPase 1 1.51242
RTKN rhotekin 1.51226
INO80B INO80 complex subunit B 1.51226
WDR54 WD repeat domain 54 1.51226
INO80B-WBP1 INO80B-WBP1 readthrough (NMD candidate) 1.51226
C2ORF81 chromosome 2 open reading frame 81 1.51226
DOK1 docking protein 1, 62kDa (downstream of tyrosine kinase 1) 1.50577
M1AP meiosis 1 associated protein 1.5057
AUP1 ancient ubiquitous protein 1 1.49567
HTRA2 HtrA serine peptidase 2 1.49567
LOXL3 lysyl oxidase-like 3 1.49567
C1D C1D nuclear receptor corepressor 1.49398
BMP10 bone morphogenetic protein 10 1.49398
ARHGAP25 Rho GTPase activating protein 25 1.49394
CNRIP1 cannabinoid receptor interacting protein 1 1.49359
PLEK pleckstrin 1.49359
PROKR1 prokineticin receptor 1 1.49355
PPP3R1 protein phosphatase 3, regulatory subunit B, alpha 1.49342
MIR5000 microRNA 5000 1.4929
EMX1 empty spiracles homeobox 1 1.49275
CCT7 chaperonin containing TCP1, subunit 7 (eta) 1.49084
FBXO41 F-box protein 41 1.49079
SPR sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) 1.48957
DYSF dysferlin 1.48919
ZNF638 zinc finger protein 638 1.48916
SMYD5 SMYD family member 5 1.48891
NOTO notochord homeobox 1.48891
PRADC1 protease-associated domain containing 1 1.48891
DCTN1 dynactin 1 1.48762
DCTN1-AS1 DCTN1 antisense RNA 1 1.48762
SLC4A5 solute carrier family 4 (sodium bicarbonate cotransporter), member 5 1.48762
FBXO48 F-box protein 48 1.4847
LRRC42 leucine rich repeat containing 42 1.47994
SNORA36C small nucleolar RNA, H/ACA box 36C 1.4755
NFU1 NFU1 iron-sulfur cluster scaffold 1.47546
LOC100133920 uncharacterized LOC100133920 1.47542
GFPT1 glutamine--fructose-6-phosphate transaminase 1 1.4752
HIP1 huntingtin interacting protein 1 1.47374
GKN2 gastrokine 2 1.47246
MIR3126 microRNA 3126 1.47204
EVA1A eva-1 homolog A (C. elegans) 1.46882
SFXN5 sideroflexin 5 1.46724
KIAA1217 KIAA1217 1.46559
ALMS1 Alstrom syndrome protein 1 1.46517
CYP26B1 cytochrome P450, family 26, subfamily B, polypeptide 1 1.4651
NAT8 N-acetyltransferase 8 (GCN5-related, putative) 1.4587
ETAA1 Ewing tumor-associated antigen 1 1.45675
MEIS1-AS3 MEIS1 antisense RNA 3 1.45612
MIR4778 microRNA 4778 1.45609
ANTXR1 anthrax toxin receptor 1 1.45286
GKN1 gastrokine 1 1.45017
MPHOSPH10 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1.44449
PAIP2B poly(A) binding protein interacting protein 2B 1.44433
LOC644838 uncharacterized LOC644838 1.43508
SNRNP27 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) 1.43257
AAK1 AP2 associated kinase 1 1.43158
TGFA transforming growth factor, alpha 1.43102
ANKRD53 ankyrin repeat domain 53 1.43022
CD207 CD207 molecule, langerin 1.43022
OR7E91P olfactory receptor, family 7, subfamily E, member 91 pseudogene 1.43022
TEX261 testis expressed 261 1.43022
CLEC4F C-type lectin domain family 4, member F 1.43019
FIGLA folliculogenesis specific basic helix-loop-helix 1.43019
ATP6V1B1 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B1 1.43013
GSTTP1 glutathione S-transferase theta pseudogene 1 1.42365
GCFC2 GC-rich sequence DNA-binding factor 2 1.42268
MXD1 MAX dimerization protein 1 1.41156
ASPRV1 aspartic peptidase, retroviral-like 1 1.41156
VAX2 ventral anterior homeobox 2 1.41033
ADD2 adducin 2 (beta) 1.40802
ATP11A ATPase, class VI, type 11A 1.39911
SNAR-H small ILF3/NF90-associated RNA H 1.3931
SNRPG small nuclear ribonucleoprotein polypeptide G 1.38993
PCYOX1 prenylcysteine oxidase 1 1.38993
FAM136A family with sequence similarity 136, member A 1.38982
TIA1 TIA1 cytotoxic granule-associated RNA binding protein 1.38964
GMCL1 germ cell-less, spermatogenesis associated 1 1.37974
GALNT15 polypeptide N-acetylgalactosaminyltransferase 15 1.37199
PCBP1 poly(rC) binding protein 1 1.36989
APLF aprataxin and PNKP like factor 1.35777
PCBP1-AS1 PCBP1 antisense RNA 1 1.35388
SDHAP1 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1 1.35325
NAALADL2 N-acetylated alpha-linked acidic dipeptidase-like 2 1.35157
C2ORF42 chromosome 2 open reading frame 42 1.35148
BCYRN1 brain cytoplasmic RNA 1 1.34649
EXOC6B exocyst complex component 6B 1.34597
MRPL19 mitochondrial ribosomal protein L19 1.34454
MEIS1 Meis homeobox 1 1.33754
LOC100133985 uncharacterized LOC100133985 1.334
NAT8B N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene) 1.32748

low copy number

Symbol Name Standardized Value
MADD MAP-kinase activating death domain -2.7023
MYBPC3 myosin binding protein C, cardiac -2.70222
ARHGEF35 Rho guanine nucleotide exchange factor (GEF) 35 -2.60587
TARP TCR gamma alternate reading frame protein -2.59148
SEC22A SEC22 vesicle trafficking protein homolog A (S. cerevisiae) -2.38731
FAM153A family with sequence similarity 153, member A -2.30812
LINC01281 long intergenic non-protein coding RNA 1281 -2.20312
LDHAL6B lactate dehydrogenase A-like 6B -2.11597
ALDH9A1 aldehyde dehydrogenase 9 family, member A1 -2.10955
CNTNAP3 contactin associated protein-like 3 -2.0128
IFT57 intraflagellar transport 57 -1.98524
STMND1 stathmin domain containing 1 -1.92736
SPI1 Spi-1 proto-oncogene -1.86684
NBEA neurobeachin -1.8124
C4ORF45 chromosome 4 open reading frame 45 -1.80511
TTLL5 tubulin tyrosine ligase-like family member 5 -1.71214
GLB1 galactosidase, beta 1 -1.68321
GLDN gliomedin -1.68202
SRPX sushi-repeat containing protein, X-linked -1.67735
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 -1.67008
OR52N1 olfactory receptor, family 52, subfamily N, member 1 -1.66175
OR52N5 olfactory receptor, family 52, subfamily N, member 5 -1.65962
MYO1E myosin IE -1.64999
MIR4451 microRNA 4451 -1.62603
RHD Rh blood group, D antigen -1.62408
BCAT1 branched chain amino-acid transaminase 1, cytosolic -1.61434
FARS2 phenylalanyl-tRNA synthetase 2, mitochondrial -1.49006
TRAPPC9 trafficking protein particle complex 9 -1.4818
MSI2 musashi RNA-binding protein 2 -1.4809
DLGAP1 discs, large (Drosophila) homolog-associated protein 1 -1.47111
TMEM178B transmembrane protein 178B -1.46881
CHST6 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 -1.46024
MRGPRX1 MAS-related GPR, member X1 -1.43503
GOLGA6L4 golgin A6 family-like 4 -1.42531
C10ORF11 chromosome 10 open reading frame 11 -1.38138
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 -1.34585