MMAC-SF Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

167 genes with high or low copy number in MMAC-SF relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
RDH16 retinol dehydrogenase 16 (all-trans) 3.12177
EIF1B eukaryotic translation initiation factor 1B 3.12177
TRANK1 tetratricopeptide repeat and ankyrin repeat containing 1 3.12177
SLC22A14 solute carrier family 22, member 14 3.12177
MYD88 myeloid differentiation primary response 88 3.12177
SDR9C7 short chain dehydrogenase/reductase family 9C, member 7 3.12177
HSD17B6 hydroxysteroid (17-beta) dehydrogenase 6 3.12177
DCLK3 doublecortin-like kinase 3 3.12177
VILL villin-like 3.12177
SLC22A13 solute carrier family 22 (organic anion/urate transporter), member 13 3.12177
ACAA1 acetyl-CoA acyltransferase 1 3.12177
MIR26A1 microRNA 26a-1 3.12177
STAC SH3 and cysteine rich domain 3.12177
DLEC1 deleted in lung and esophageal cancer 1 3.12177
OXSR1 oxidative stress responsive 1 3.12177
C3ORF35 chromosome 3 open reading frame 35 3.12177
PLCD1 phospholipase C, delta 1 3.12177
EPM2AIP1 EPM2A (laforin) interacting protein 1 3.12177
XYLB xylulokinase homolog (H. influenzae) 3.12177
EXOG endo/exonuclease (5'-3'), endonuclease G-like 2.93899
KHDRBS2 KH domain containing, RNA binding, signal transduction associated 2 2.93899
SCN5A sodium channel, voltage gated, type V alpha subunit 2.93899
SCN11A sodium channel, voltage gated, type XI alpha subunit 2.93899
TAC3 tachykinin 3 2.93899
WDR48 WD repeat domain 48 2.93899
MYO1A myosin IA 2.93899
GPR182 G protein-coupled receptor 182 2.93899
ZBTB39 zinc finger and BTB domain containing 39 2.93899
GORASP1 golgi reassembly stacking protein 1, 65kDa 2.93899
TTC21A tetratricopeptide repeat domain 21A 2.93899
ITGA9 integrin, alpha 9 2.93899
EIF1B-AS1 EIF1B antisense RNA 1 2.93899
SCN10A sodium channel, voltage gated, type X alpha subunit 2.93899
CTDSPL CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like 2.93899
TMEM194A transmembrane protein 194A 2.93899
ACVR2B-AS1 ACVR2B antisense RNA 1 2.93899
MYRIP myosin VIIA and Rab interacting protein 2.93899
XIRP1 xin actin binding repeat containing 1 2.93899
ACVR2B activin A receptor, type IIB 2.93899
CSRNP1 cysteine-serine-rich nuclear protein 1 2.93899
SNORA64 small nucleolar RNA, H/ACA box 64 2.93899
LALBA lactalbumin, alpha- 2.76305
ZNF641 zinc finger protein 641 2.76305
H1FNT H1 histone family, member N, testis-specific 2.76305
RYBP RING1 and YY1 binding protein 2.76305
LINC00870 long intergenic non-protein coding RNA 870 2.76305
LGSN lengsin, lens protein with glutamine synthetase domain 2.76305
PTPRB protein tyrosine phosphatase, receptor type, B 2.76305
KCNMB4 potassium channel subfamily M regulatory beta subunit 4 2.76305
PTPRR protein tyrosine phosphatase, receptor type, R 2.76305
FLJ41278 uncharacterized LOC400046 2.76305
SNORA2A small nucleolar RNA, H/ACA box 2A 2.64759
IRAK3 interleukin-1 receptor-associated kinase 3 2.64759
OR10AD1 olfactory receptor, family 10, subfamily AD, member 1 2.64759
MSRB3 methionine sulfoxide reductase B3 2.64759
C12ORF54 chromosome 12 open reading frame 54 2.64759
CNOT2 CCR4-NOT transcription complex, subunit 2 2.64759
KANSL2 KAT8 regulatory NSL complex subunit 2 2.64759
CCNT1 cyclin T1 2.64759
MDM1 Mdm1 nuclear protein homolog (mouse) 2.64759
OR8S1 olfactory receptor, family 8, subfamily S, member 1 2.64759
HELB helicase (DNA) B 2.64759
RPSAP52 ribosomal protein SA pseudogene 52 2.64759
SNORA34 small nucleolar RNA, H/ACA box 34 2.64759
LLPH LLP homolog, long-term synaptic facilitation (Aplysia) 2.64759
TMBIM4 transmembrane BAX inhibitor motif containing 4 2.64759
ANP32D acidic (leucine-rich) nuclear phosphoprotein 32 family, member D 2.64759
PFKM phosphofructokinase, muscle 2.59653
TMF1 TATA element modulatory factor 1 2.59653
ARL6IP5 ADP-ribosylation factor-like 6 interacting protein 5 2.59653
SNORA2B small nucleolar RNA, H/ACA box 2B 2.59653
MIR3136 microRNA 3136 2.59653
LMOD3 leiomodin 3 (fetal) 2.59653
ASB8 ankyrin repeat and SOCS box containing 8 2.59653
HMGA2 high mobility group AT-hook 2 2.59653
EOGT EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase 2.59653
FAM19A4 family with sequence similarity 19 (chemokine (C-C motif)-like), member A4 2.59653
GRIP1 glutamate receptor interacting protein 1 2.59653
UBA3 ubiquitin-like modifier activating enzyme 3 2.59653
SENP1 SUMO1/sentrin specific peptidase 1 2.49065
TMEM106C transmembrane protein 106C 2.49065
PTP4A1 protein tyrosine phosphatase type IVA, member 1 2.49065
FRMD4B FERM domain containing 4B 2.49065
SNORA70G small nucleolar RNA, H/ACA box 70G 2.49065
LOC100507250 uncharacterized LOC100507250 2.49065
LOC441155 zinc finger CCCH-type domain-containing-like 2.49065
COL2A1 collagen, type II, alpha 1 2.49065
RAB3IP RAB3A interacting protein 2.49065
BEST3 bestrophin 3 2.49065
RAP1B RAP1B, member of RAS oncogene family 2.49065
LRRC10 leucine rich repeat containing 10 2.44392
CPSF6 cleavage and polyadenylation specific factor 6, 68kDa 2.44392
NUP107 nucleoporin 107kDa 2.44392
MIR3913-2 microRNA 3913-2 2.44392
CCT2 chaperonin containing TCP1, subunit 2 (beta) 2.44392
MIR1279 microRNA 1279 2.44392
MIR3913-1 microRNA 3913-1 2.44392
YEATS4 YEATS domain containing 4 2.41451
LYZ lysozyme 2.41451
FRS2 fibroblast growth factor receptor substrate 2 2.39327
XRCC6BP1 XRCC6 binding protein 1 2.39327
SLC35E3 solute carrier family 35, member E3 2.39327
LOC100506844 uncharacterized LOC100506844 2.36889
LOC100130075 SUZ RNA binding domain containing 1 pseudogene 2.35236
CPM carboxypeptidase M 2.35236
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 2.35236
METTL21B methyltransferase like 21B 2.3178
CTDSP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 2.3178
MIR26A2 microRNA 26a-2 2.3178
DTX3 deltex 3, E3 ubiquitin ligase 2.30944
METTL1 methyltransferase like 1 2.30944
PIP4K2C phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 2.30944
AVIL advillin 2.30944
CYP27B1 cytochrome P450, family 27, subfamily B, polypeptide 1 2.30944
TSFM Ts translation elongation factor, mitochondrial 2.30944
MARCH9 membrane-associated ring finger (C3HC4) 9 2.30944
CDK4 cyclin-dependent kinase 4 2.283
TSPAN31 tetraspanin 31 2.283
SLC26A10 solute carrier family 26, member 10 2.283
ARHGEF25 Rho guanine nucleotide exchange factor (GEF) 25 2.283
AGAP2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 2.283
AGAP2-AS1 AGAP2 antisense RNA 1 2.283
B4GALNT1 beta-1,4-N-acetyl-galactosaminyl transferase 1 2.283
FAM86DP family with sequence similarity 86, member D, pseudogene 2.15832
CNTN3 contactin 3 (plasmacytoma associated) 2.14311
MIR4273 microRNA 4273 2.14311
FLJ20518 2.14311
MIR1324 microRNA 1324 2.14311
ZNF717 zinc finger protein 717 2.14311
LRRFIP2 leucine rich repeat (in FLII) interacting protein 2 2.14116
MIR128-2 microRNA 128-2 2.14116
ADGRB3 adhesion G protein-coupled receptor B3 2.14116
PDZRN3 PDZ domain containing ring finger 3 2.14116
ARPP21 cAMP-regulated phosphoprotein, 21kDa 2.14116
GOLGA4 golgin A4 2.14116
MLH1 mutL homolog 1 2.14116
PPP4R2 protein phosphatase 4, regulatory subunit 2 2.1316
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) 2.1316
EBLN2 endogenous Bornavirus-like nucleoprotein 2 2.12931
GBE1 glucan (1,4-alpha-), branching enzyme 1 2.12931
NXPH4 neurexophilin 4 2.12703
MIR1228 microRNA 1228 2.12703
STAT6 signal transducer and activator of transcription 6, interleukin-4 induced 2.12703
NAB2 NGFI-A binding protein 2 (EGR1 binding protein 2) 2.12703
LRP1 low density lipoprotein receptor-related protein 1 2.12703
EPHA3 EPH receptor A3 2.12527
FAM19A1 family with sequence similarity 19 (chemokine (C-C motif)-like), member A1 2.12439
MIR4444-1 microRNA 4444-1 2.12439
ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 2.12225
GXYLT2 glucoside xylosyltransferase 2 2.12225
GPR27 G protein-coupled receptor 27 2.12225
MIR1284 microRNA 1284 2.12225
SHQ1 SHQ1, H/ACA ribonucleoprotein assembly factor 2.12225
EIF4E3 eukaryotic translation initiation factor 4E family member 3 2.12225
PROK2 prokineticin 2 2.12225
CADM2 cell adhesion molecule 2 2.11435
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) 2.11344
FOXP1 forkhead box P1 2.11344
SLC25A51P1 solute carrier family 25, member 51 pseudogene 1 2.10038
MITF microphthalmia-associated transcription factor 2.09431
PHF3 PHD finger protein 3 2.09431
TMEM117 transmembrane protein 117 2.08806
NELL2 NEL-like 2 (chicken) 2.08423
EYS eyes shut homolog (Drosophila) 2.08391
OS9 osteosarcoma amplified 9, endoplasmic reticulum lectin 2.0731

low copy number

Symbol Name Standardized Value
CES1P1 carboxylesterase 1 pseudogene 1 -2.74485
BTNL3 butyrophilin-like 3 -2.72661