Mebendazole_NCI-H661 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Mebendazole perturbation in NCI-H661 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Mebendazole_NCI-H661 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
TMSB4X thymosin beta 4, X-linked 0.124506
CALR calreticulin 0.0702167
EEF2 eukaryotic translation elongation factor 2 0.0681502
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae) 0.0634673
MYH9 myosin, heavy chain 9, non-muscle 0.0632568
MKI67 marker of proliferation Ki-67 0.0530285
ACTG1 actin gamma 1 0.048609
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0447126
PTMA prothymosin, alpha 0.0437599
EEF1G eukaryotic translation elongation factor 1 gamma 0.0435262
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0429452
RPL3 ribosomal protein L3 0.0421361
FTH1 ferritin, heavy polypeptide 1 0.0401122
THBS1 thrombospondin 1 0.0348178
MYO10 myosin X 0.034432
APP amyloid beta (A4) precursor protein 0.0333131
HSPA8 heat shock 70kDa protein 8 0.0332094
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.032184
PSMA7 proteasome (prosome, macropain) subunit, alpha type, 7 0.0319512
YBX1 Y box binding protein 1 0.0318729
NCAPD2 non-SMC condensin I complex, subunit D2 0.0315173
SF3A1 splicing factor 3a, subunit 1, 120kDa 0.0312149
HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 0.0304563
NFE2L1 nuclear factor, erythroid 2-like 1 0.0302534
TMED9 transmembrane emp24 protein transport domain containing 9 0.0302378
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0301822
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0301098
DCTN1 dynactin 1 0.0297754
RPL7A ribosomal protein L7a 0.0295545
WDR43 WD repeat domain 43 0.0280209
PNN pinin, desmosome associated protein 0.0277256
MB21D2 Mab-21 domain containing 2 0.0274348
NCOR2 nuclear receptor corepressor 2 0.0274253
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.027205
AGPAT1 1-acylglycerol-3-phosphate O-acyltransferase 1 0.0271172
SPAG9 sperm associated antigen 9 0.0270754
BHLHE40 basic helix-loop-helix family, member e40 0.0270664
H1-4 H1.4 linker histone, cluster member 0.0263866
STMN1 stathmin 1 0.0260451
SPAG5 sperm associated antigen 5 0.0259085
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0258938
RPL23 ribosomal protein L23 0.0252744
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0252591
THRAP3 thyroid hormone receptor associated protein 3 0.024851
CNN3 calponin 3, acidic 0.0244652
TRIO trio Rho guanine nucleotide exchange factor 0.0240487
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.024022
ANXA5 annexin A5 0.0239907
MAPRE1 microtubule-associated protein, RP/EB family, member 1 0.0238336
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.023523
EIF4H eukaryotic translation initiation factor 4H 0.0234161
NUDC nudC nuclear distribution protein 0.0232617
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 0.022778
C1QBP complement component 1, q subcomponent binding protein 0.0226027
CNBP CCHC-type zinc finger, nucleic acid binding protein 0.0220293
COPG1 coatomer protein complex, subunit gamma 1 0.0218891
UPP1 uridine phosphorylase 1 0.0218653
ADM adrenomedullin 0.0216564
VEGFA vascular endothelial growth factor A 0.0213328
HNRNPM heterogeneous nuclear ribonucleoprotein M 0.0212633
EGFR epidermal growth factor receptor 0.0211585
RPS4Y1 ribosomal protein S4, Y-linked 1 0.0211509
FUS FUS RNA binding protein 0.0210833
FLNA filamin A, alpha 0.0209872
SEMA3E sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E 0.0209844
CENPF centromere protein F, 350/400kDa 0.0208711
RPL26 ribosomal protein L26 0.020818
WDR62 WD repeat domain 62 0.0208068
PABPN1 poly(A) binding protein, nuclear 1 0.0207029
MACF1 microtubule-actin crosslinking factor 1 0.0206559
RPL13A ribosomal protein L13a 0.0205169
PCDH18 protocadherin 18 0.0203354
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0202137
AURKA aurora kinase A 0.0200144
AHNAK AHNAK nucleoprotein 0.0200128
INCENP inner centromere protein antigens 135/155kDa 0.0197555
PLEKHB2 pleckstrin homology domain containing, family B (evectins) member 2 0.0197301
GPX4 glutathione peroxidase 4 0.0196588
TMSB10 thymosin beta 10 0.0195989
SRRM2 serine/arginine repetitive matrix 2 0.019425
HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 (2H9) 0.0194198
HNRNPUL1 heterogeneous nuclear ribonucleoprotein U-like 1 0.0192659
VPS72 vacuolar protein sorting 72 homolog (S. cerevisiae) 0.0192057
SIN3A SIN3 transcription regulator family member A 0.0191616
ANP32A acidic (leucine-rich) nuclear phosphoprotein 32 family, member A 0.0190996
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) 0.0190735
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0190694
RPL4 ribosomal protein L4 0.0189545
NONO non-POU domain containing, octamer-binding 0.0187145
PDCD5 programmed cell death 5 0.0186865
CASC3 cancer susceptibility candidate 3 0.0180139
ZC3H13 zinc finger CCCH-type containing 13 0.017892
ANXA2 annexin A2 0.0178433
NBAS neuroblastoma amplified sequence 0.017821
SSRP1 structure specific recognition protein 1 0.0177135
RPN1 ribophorin I 0.0176967
PER1 period circadian clock 1 0.0175847
THOC1 THO complex 1 0.0175359
PDIA4 protein disulfide isomerase family A, member 4 0.0174055
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0173429

decreased expression

Symbol Name Standardized Value
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.176265
COL11A1 collagen, type XI, alpha 1 -0.135858
ERBB4 erb-b2 receptor tyrosine kinase 4 -0.121356
VIM vimentin -0.120736
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.116952
CDH10 cadherin 10, type 2 (T2-cadherin) -0.116896
CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) -0.116863
CADM2 cell adhesion molecule 2 -0.104034
PEG10 paternally expressed 10 -0.098429
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0922663
PCLO piccolo presynaptic cytomatrix protein -0.0773935
PCDH9 protocadherin 9 -0.0766916
ADGRL2 adhesion G protein-coupled receptor L2 -0.0731269
ITGAV integrin, alpha V -0.0721299
PFN1 profilin 1 -0.0692104
BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2 -0.0669334
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0668416
GPC3 glypican 3 -0.0666612
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0654064
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 -0.0650067
HS3ST5 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 -0.0645464
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) -0.0623905
GNAS GNAS complex locus -0.0607624
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0600016
RPS16 ribosomal protein S16 -0.0598302
TRPS1 trichorhinophalangeal syndrome I -0.058916
FNDC3B fibronectin type III domain containing 3B -0.0581527
STRN3 striatin, calmodulin binding protein 3 -0.0566093
PHIP pleckstrin homology domain interacting protein -0.0544302
PLPP1 phospholipid phosphatase 1 -0.053316
TSC22D2 TSC22 domain family, member 2 -0.0531125
MAP4 microtubule-associated protein 4 -0.0517443
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) -0.0513868
SNX6 sorting nexin 6 -0.0505839
PDIA3 protein disulfide isomerase family A, member 3 -0.0500725
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0485289
GULP1 GULP, engulfment adaptor PTB domain containing 1 -0.0482773
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.047209
MRPS30 mitochondrial ribosomal protein S30 -0.046295
FAM171B family with sequence similarity 171, member B -0.0461074
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0455007
MEIS2 Meis homeobox 2 -0.0444695
CDH19 cadherin 19, type 2 -0.0442597
NAP1L1 nucleosome assembly protein 1-like 1 -0.0442386
COL1A2 collagen, type I, alpha 2 -0.0439064
NRG1 neuregulin 1 -0.0436571
PRKD1 protein kinase D1 -0.0431844
RBM39 RNA binding motif protein 39 -0.0421663
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0418531
GOLGA4 golgin A4 -0.0416113
NIPBL Nipped-B homolog (Drosophila) -0.0412795
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats -0.0409204
DPYD dihydropyrimidine dehydrogenase -0.0408456
SRP72 signal recognition particle 72kDa -0.0404627
ZFAND3 zinc finger, AN1-type domain 3 -0.0401785
RLF rearranged L-myc fusion -0.0399643
TUBA1B tubulin, alpha 1b -0.0395199
PRTG protogenin -0.0391058
YES1 YES proto-oncogene 1, Src family tyrosine kinase -0.0390428
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0389372
RPS8 ribosomal protein S8 -0.0389296
LDHA lactate dehydrogenase A -0.038209
RAD51B RAD51 paralog B -0.0379943
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0379223
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0377212
MARCHF6 membrane associated ring-CH-type finger 6 -0.0373043
NPAS3 neuronal PAS domain protein 3 -0.0370941
PTGES3 prostaglandin E synthase 3 (cytosolic) -0.0370808
PGAP1 post-GPI attachment to proteins 1 -0.0367105
TENM3 teneurin transmembrane protein 3 -0.0361506
RTN3 reticulon 3 -0.0361146
SMYD3 SET and MYND domain containing 3 -0.0356592
RALGAPA1 Ral GTPase activating protein, alpha subunit 1 (catalytic) -0.0355963
CBFA2T2 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 -0.035277
PUM1 pumilio RNA-binding family member 1 -0.0352395
STAG2 stromal antigen 2 -0.0351756
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.0348804
TNRC6B trinucleotide repeat containing 6B -0.034765
IRF2BP2 interferon regulatory factor 2 binding protein 2 -0.0346602
RSL1D1 ribosomal L1 domain containing 1 -0.0345827
WSB1 WD repeat and SOCS box containing 1 -0.0340874
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 -0.0340738
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0340213
CDK6 cyclin-dependent kinase 6 -0.0336812
SRP54 signal recognition particle 54kDa -0.0334713
CXADR coxsackie virus and adenovirus receptor -0.0334399
TJP1 tight junction protein 1 -0.0326733
PPDPF pancreatic progenitor cell differentiation and proliferation factor -0.0326106
PBX3 pre-B-cell leukemia homeobox 3 -0.0325347
TFRC transferrin receptor -0.032263
RPLP0 ribosomal protein, large, P0 -0.0318998
RAB3GAP1 RAB3 GTPase activating protein subunit 1 (catalytic) -0.0317599
NCAM2 neural cell adhesion molecule 2 -0.0316694
WASF2 WAS protein family, member 2 -0.0313369
ADGRL3 adhesion G protein-coupled receptor L3 -0.0313159
METAP2 methionyl aminopeptidase 2 -0.0312461
ZFPM2 zinc finger protein, FOG family member 2 -0.030999
RDX radixin -0.0309245
SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 -0.0308369
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.030497