Medroxyprogesterone acetate_SK-MEL-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Medroxyprogesterone acetate perturbation in SK-MEL-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Medroxyprogesterone acetate_SK-MEL-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 0.227211
PKM pyruvate kinase, muscle 0.143865
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.126493
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 0.116155
NLGN1 neuroligin 1 0.100488
LDHA lactate dehydrogenase A 0.0929197
PGK1 phosphoglycerate kinase 1 0.0842775
CTSB cathepsin B 0.0715339
ANGPTL4 angiopoietin-like 4 0.0595099
ENO1 enolase 1, (alpha) 0.0541278
IGFBP3 insulin-like growth factor binding protein 3 0.0538861
NRG3 neuregulin 3 0.0531576
FLNA filamin A, alpha 0.0528818
SFTPA2 surfactant protein A2 0.0511446
TM4SF1 transmembrane 4 L six family member 1 0.049187
OSBPL10 oxysterol binding protein-like 10 0.0489072
IFI6 interferon, alpha-inducible protein 6 0.0486527
APOD apolipoprotein D 0.0472853
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.042593
TNNC1 troponin C type 1 (slow) 0.0422944
DST dystonin 0.0414451
EGLN1 egl-9 family hypoxia-inducible factor 1 0.0412646
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.0408212
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0403136
ANXA5 annexin A5 0.0358216
EEF2 eukaryotic translation elongation factor 2 0.0355114
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 0.0352254
SOX10 SRY (sex determining region Y)-box 10 0.0346814
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0325326
USP22 ubiquitin specific peptidase 22 0.0311633
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0308692
SLC26A2 solute carrier family 26 (anion exchanger), member 2 0.0307366
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0297456
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.0293474
PDIA3 protein disulfide isomerase family A, member 3 0.0292172
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.0287847
EEF1G eukaryotic translation elongation factor 1 gamma 0.0283375
NAV2 neuron navigator 2 0.0280877
NDRG1 N-myc downstream regulated 1 0.0279204
SVIL supervillin 0.0278512
IFI44L interferon-induced protein 44-like 0.027706
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0276406
ATP1A4 ATPase, Na+/K+ transporting, alpha 4 polypeptide 0.0275477
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0273855
CCND1 cyclin D1 0.0260039
IGF1R insulin-like growth factor 1 receptor 0.0258213
LOC112694756 uncharaterized LOC112694756 0.0255058
MCL1 myeloid cell leukemia 1 0.0254209
LINGO2 leucine rich repeat and Ig domain containing 2 0.0249759
RANGAP1 Ran GTPase activating protein 1 0.0246475
MKI67 marker of proliferation Ki-67 0.0245624
H2AC6 H2A clustered histone 6 0.02426
PLAT plasminogen activator, tissue 0.02399
KLF9 Kruppel-like factor 9 0.0236583
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 0.022747
GLUL glutamate-ammonia ligase 0.0226973
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 0.0226115
CCND3 cyclin D3 0.0225164
CD59 CD59 molecule, complement regulatory protein 0.0218462
ZC3H7B zinc finger CCCH-type containing 7B 0.0216288
GNAI2 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 0.0216102
WNK1 WNK lysine deficient protein kinase 1 0.0214281
BRD2 bromodomain containing 2 0.021087
B2M beta-2-microglobulin 0.0209574
SFT2D2 SFT2 domain containing 2 0.0209369
ERC2 ELKS/RAB6-interacting/CAST family member 2 0.0208009
DIAPH1 diaphanous-related formin 1 0.0207155
FTH1 ferritin, heavy polypeptide 1 0.0206864
ARFGEF3 ARFGEF family member 3 0.0206035
BACE2 beta-site APP-cleaving enzyme 2 0.0205948
APOLD1 apolipoprotein L domain containing 1 0.0198459
CD109 CD109 molecule 0.0196519
FAM78B family with sequence similarity 78, member B 0.0195147
VDAC1 voltage-dependent anion channel 1 0.01928
USP53 ubiquitin specific peptidase 53 0.0191937
MEF2A myocyte enhancer factor 2A 0.019112
CD63 CD63 molecule 0.0190717
RIGI RNA sensor RIG-I 0.0189985
NFE2L1 nuclear factor, erythroid 2-like 1 0.018936
ZKSCAN1 zinc finger with KRAB and SCAN domains 1 0.0187734
FAM13A family with sequence similarity 13, member A 0.0184932
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 0.01846
YBX3 Y box binding protein 3 0.0184125
MKRN1 makorin ring finger protein 1 0.0183806
RPL39 ribosomal protein L39 0.018049
PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha 0.0179896
CORO1C coronin, actin binding protein, 1C 0.0179398
MYO9B myosin IXB 0.0178794
SLC25A17 solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17 0.0176879
KANK1 KN motif and ankyrin repeat domains 1 0.0176025
RUNX1 runt-related transcription factor 1 0.0173514
MMP12 matrix metallopeptidase 12 0.0168998
DTX3L deltex 3 like, E3 ubiquitin ligase 0.0167751
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0166668
VAPB VAMP (vesicle-associated membrane protein)-associated protein B and C 0.0165102
ZNF114 zinc finger protein 114 0.0164905
RPL36 ribosomal protein L36 0.0163867
WAC WW domain containing adaptor with coiled-coil 0.0163381
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0162679
ACTN1 actinin, alpha 1 0.0162105

decreased expression

Symbol Name Standardized Value
FMN1 formin 1 -0.16262
VIM vimentin -0.133682
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.131392
LSAMP limbic system-associated membrane protein -0.123138
FN1 fibronectin 1 -0.0813009
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0792225
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0659617
FRMD4A FERM domain containing 4A -0.0566661
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0560947
CANX calnexin -0.055256
GLS2 glutaminase 2 (liver, mitochondrial) -0.0540461
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase -0.0535404
FRMD5 FERM domain containing 5 -0.0521067
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0509502
NAP1L1 nucleosome assembly protein 1-like 1 -0.0454433
GOLGA4 golgin A4 -0.045374
EXT1 exostosin glycosyltransferase 1 -0.0453029
FHIT fragile histidine triad -0.0431528
EIF1 eukaryotic translation initiation factor 1 -0.0422485
SREBF2 sterol regulatory element binding transcription factor 2 -0.0418537
PTMA prothymosin, alpha -0.0399852
SLC39A11 solute carrier family 39, member 11 -0.0393165
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0392321
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0392281
PRELID2 PRELI domain containing 2 -0.0389309
MORF4L2 mortality factor 4 like 2 -0.0380512
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0376693
IL1RAP interleukin 1 receptor accessory protein -0.0374024
IL1RAPL1 interleukin 1 receptor accessory protein-like 1 -0.0372063
RPL23 ribosomal protein L23 -0.0364814
TMSB10 thymosin beta 10 -0.0357166
MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 -0.0350458
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa -0.0342848
CHD1 chromodomain helicase DNA binding protein 1 -0.0332244
CDH13 cadherin 13 -0.0325828
GNAI3 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 -0.0322369
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 -0.0314879
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0310841
SBF2 SET binding factor 2 -0.0297768
TSC22D2 TSC22 domain family, member 2 -0.0297648
EXOC4 exocyst complex component 4 -0.0295035
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0290657
TFRC transferrin receptor -0.0286813
TPTEP2-CSNK1E TPTEP2-CSNK1E readthrough -0.028675
PRRC2C proline-rich coiled-coil 2C -0.0282187
KAZN kazrin, periplakin interacting protein -0.0277254
ZCCHC7 zinc finger, CCHC domain containing 7 -0.02749
THOC2 THO complex 2 -0.0272062
OGA O-GlcNAcase -0.0270572
FTL ferritin, light polypeptide -0.0269674
BRWD3 bromodomain and WD repeat domain containing 3 -0.0269053
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 -0.0266393
TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) -0.0264851
ERBIN erbb2 interacting protein -0.026178
JMJD1C jumonji domain containing 1C -0.0258695
GARS1 glycyl-tRNA synthetase 1 -0.0253859
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0251759
ARB2A ARB2 cotranscriptional regulator A -0.0248909
HDAC4 histone deacetylase 4 -0.0245748
TBC1D22A TBC1 domain family, member 22A -0.0245048
EYA1 EYA transcriptional coactivator and phosphatase 1 -0.0244714
RYBP RING1 and YY1 binding protein -0.024261
NAMPT nicotinamide phosphoribosyltransferase -0.0242505
TMEM131 transmembrane protein 131 -0.024246
CLIP4 CAP-GLY domain containing linker protein family, member 4 -0.0240985
CUL3 cullin 3 -0.0240916
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0240773
ATM ATM serine/threonine kinase -0.0239443
RPS3 ribosomal protein S3 -0.0234952
MEMO1 mediator of cell motility 1 -0.0234781
ANLN anillin, actin binding protein -0.0234528
TRA2A transformer 2 alpha homolog (Drosophila) -0.0233451
SKP1 S-phase kinase-associated protein 1 -0.023341
NPR2 natriuretic peptide receptor 2 -0.0232629
ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) -0.0230349
RASA2 RAS p21 protein activator 2 -0.0229032
AFF4 AF4/FMR2 family, member 4 -0.0227085
UBE2E2 ubiquitin-conjugating enzyme E2E 2 -0.0226508
FNDC3B fibronectin type III domain containing 3B -0.0226428
CLIC4 chloride intracellular channel 4 -0.0226166
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0226155
CLEC2D C-type lectin domain family 2, member D -0.022601
OXSR1 oxidative stress responsive 1 -0.0224577
KDM5B lysine (K)-specific demethylase 5B -0.0223758
SMYD3 SET and MYND domain containing 3 -0.0222841
COX7B2 cytochrome c oxidase subunit VIIb2 -0.0221239
TRIM33 tripartite motif containing 33 -0.0221165
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.021985
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.0219589
ASXL1 additional sex combs like transcriptional regulator 1 -0.0217266
PPP2R3A protein phosphatase 2, regulatory subunit B'', alpha -0.021667
RPS21 ribosomal protein S21 -0.0216525
ZFAND3 zinc finger, AN1-type domain 3 -0.0215805
FNIP1 folliculin interacting protein 1 -0.0214976
VPS13A vacuolar protein sorting 13 homolog A (S. cerevisiae) -0.0212941
RPL5 ribosomal protein L5 -0.0212262
ADAM17 ADAM metallopeptidase domain 17 -0.0211209
FBXW7 F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase -0.0210973
MARCHF1 membrane associated ring-CH-type finger 1 -0.0210843
IFRD1 interferon-related developmental regulator 1 -0.0208567