Melanoma Gene Set

Dataset dbGAP Gene-Trait Associations
Category disease or phenotype associations
Type trait
Description A malignant neoplasm derived from cells that are capable of forming melanin, which may occur in the skin of any part of the body, in the eye, or, rarely, in the mucous membranes of the genitalia, anus, oral cavity, or other sites. It occurs mostly in adults and may originate de novo or from a pigmented nevus or malignant lentigo. Melanomas frequently metastasize widely, and the regional lymph nodes, liver, lungs, and brain are likely to be involved. The incidence of malignant skin melanomas is rising rapidly in all parts of the world. (Stedman, 25th ed; from Rook et al., Textbook of Dermatology, 4th ed, p2445)|A malignant, usually aggressive tumor composed of atypical, neoplastic melanocytes. Most often, melanomas arise in the skin (cutaneous melanomas) and include the following histologic subtypes: superficial spreading melanoma, nodular melanoma, acral lentiginous melanoma, and lentigo maligna melanoma. Cutaneous melanomas may arise from acquired or congenital melanocytic or dysplastic nevi. Melanomas may also arise in other anatomic sites including the gastrointestinal system, eye, urinary tract, and reproductive system. Melanomas frequently metastasize to lymph nodes, liver, lungs, and brain. (Experimental Factor Ontology, EFO_0000756)
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Genes

13 genes associated with the trait Melanoma in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset.

Symbol Name Standardized Value
CDK10 cyclin-dependent kinase 10 1.61174
AFG3L1P AFG3-like AAA ATPase 1, pseudogene 1.45996
PIGU phosphatidylinositol glycan anchor biosynthesis, class U 1.23281
TYR tyrosinase 1.16559
ALS2CR12 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 0.866561
PLA2G6 phospholipase A2, group VI (cytosolic, calcium-independent) 0.836775
MX2 MX dynamin-like GTPase 2 0.820059
ATM ATM serine/threonine kinase 0.820059
MTAP methylthioadenosine phosphorylase 0.781064
CLPTM1L CLPTM1-like 0.711358
PARP1 poly (ADP-ribose) polymerase 1 0.654022
SLC45A2 solute carrier family 45, member 2 0.609816
ANXA9 annexin A9 0.443956