Methylprednisolone succinate_BT-474 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Methylprednisolone succinate perturbation in BT-474 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Methylprednisolone succinate_BT-474 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
CEP250 centrosomal protein 250kDa 0.10778
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) 0.0790268
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0712112
NCOA3 nuclear receptor coactivator 3 0.0580905
CATSPERB catsper channel auxiliary subunit beta 0.0563184
CLTC clathrin, heavy chain (Hc) 0.0552669
PTK2 protein tyrosine kinase 2 0.0537733
THSD4 thrombospondin, type I, domain containing 4 0.0459112
JMJD1C jumonji domain containing 1C 0.0441487
ANKRD36C ankyrin repeat domain 36C 0.0433805
ITCH itchy E3 ubiquitin protein ligase 0.0429701
GRB10 growth factor receptor-bound protein 10 0.042151
TRPS1 trichorhinophalangeal syndrome I 0.0385059
LPP LIM domain containing preferred translocation partner in lipoma 0.0384169
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.038126
ESYT2 extended synaptotagmin-like protein 2 0.0355262
LIMCH1 LIM and calponin homology domains 1 0.0345482
PTPRK protein tyrosine phosphatase, receptor type, K 0.0334037
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0327998
ZMYND8 zinc finger, MYND-type containing 8 0.0319397
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 0.0312811
ANXA2 annexin A2 0.0311829
FBXL20 F-box and leucine-rich repeat protein 20 0.0311155
EFNA5 ephrin-A5 0.0302799
ACSS2 acyl-CoA synthetase short-chain family member 2 0.0301821
GMDS GDP-mannose 4,6-dehydratase 0.029877
TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein 0.0296033
LASP1 LIM and SH3 protein 1 0.0294656
PPP2R5E protein phosphatase 2, regulatory subunit B', epsilon isoform 0.0293526
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0286183
SRCIN1 SRC kinase signaling inhibitor 1 0.0285912
MSI2 musashi RNA-binding protein 2 0.0281677
PRRC2B proline-rich coiled-coil 2B 0.0273093
ZBTB20 zinc finger and BTB domain containing 20 0.0270173
GATAD2B GATA zinc finger domain containing 2B 0.0265941
SBF2 SET binding factor 2 0.0259932
TMCC1 transmembrane and coiled-coil domain family 1 0.025875
TC2N tandem C2 domains, nuclear 0.0257777
RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase 0.025482
VAV3 vav 3 guanine nucleotide exchange factor 0.0252659
KIAA1217 KIAA1217 0.024718
DHX15 DEAH (Asp-Glu-Ala-His) box helicase 15 0.024349
SETD5 SET domain containing 5 0.0239113
SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase 0.023824
TTC6 tetratricopeptide repeat domain 6 0.023515
ADAR adenosine deaminase, RNA-specific 0.0235094
BZW1 basic leucine zipper and W2 domains 1 0.0234698
DSCAM Down syndrome cell adhesion molecule 0.0233741
KDM7A lysine (K)-specific demethylase 7A 0.0232979
PPP6R3 protein phosphatase 6, regulatory subunit 3 0.0230446
DNAH14 dynein, axonemal, heavy chain 14 0.0225993
RBM47 RNA binding motif protein 47 0.0221186
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0221075
USP34 ubiquitin specific peptidase 34 0.0217994
WAC WW domain containing adaptor with coiled-coil 0.0217417
WDFY3 WD repeat and FYVE domain containing 3 0.0216365
AFF1 AF4/FMR2 family, member 1 0.0214414
HSPA8 heat shock 70kDa protein 8 0.0203927
DENND1B DENN/MADD domain containing 1B 0.0203402
KIF16B kinesin family member 16B 0.020245
PRELID2 PRELI domain containing 2 0.0201505
CCSER1 coiled-coil serine-rich protein 1 0.0200806
AP2B1 adaptor-related protein complex 2, beta 1 subunit 0.0198153
HIPK2 homeodomain interacting protein kinase 2 0.0196772
CTBP2 C-terminal binding protein 2 0.0195186
PTEN phosphatase and tensin homolog 0.0195005
SMC4 structural maintenance of chromosomes 4 0.0194601
PARD3 par-3 family cell polarity regulator 0.0193976
GNPDA1 glucosamine-6-phosphate deaminase 1 0.0190416
AKAP9 A kinase (PRKA) anchor protein 9 0.0187433
RBPMS RNA binding protein with multiple splicing 0.0187003
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0186012
TMTC2 transmembrane and tetratricopeptide repeat containing 2 0.0185897
ARHGEF38 Rho guanine nucleotide exchange factor (GEF) 38 0.0184733
RAD51B RAD51 paralog B 0.0184192
INTS6 integrator complex subunit 6 0.0184157
SEPTIN11 septin 11 0.0183273
CDK13 cyclin-dependent kinase 13 0.0182443
TAS2R14 taste receptor, type 2, member 14 0.0181642
BAZ2A bromodomain adjacent to zinc finger domain, 2A 0.0181601
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0181174
LARP4B La ribonucleoprotein domain family, member 4B 0.0180875
TRIO trio Rho guanine nucleotide exchange factor 0.0179932
FAM168A family with sequence similarity 168, member A 0.0176248
ANKRD17 ankyrin repeat domain 17 0.0174636
UBA6 ubiquitin-like modifier activating enzyme 6 0.017408
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 0.0173337
KMT2E lysine (K)-specific methyltransferase 2E 0.0172605
IL1RAPL2 interleukin 1 receptor accessory protein-like 2 0.0171921
BBX bobby sox homolog (Drosophila) 0.0171788
SOS1 son of sevenless homolog 1 (Drosophila) 0.0171563
RPRD2 regulation of nuclear pre-mRNA domain containing 2 0.0170646
ENAH enabled homolog (Drosophila) 0.0170367
CSNK1A1 casein kinase 1, alpha 1 0.0170156
PLEC plectin 0.0169942
KMT5B lysine methyltransferase 5B 0.0169542
BIRC6 baculoviral IAP repeat containing 6 0.0167236
AHCTF1 AT hook containing transcription factor 1 0.0166659
MACF1 microtubule-actin crosslinking factor 1 0.0166056
TFRC transferrin receptor 0.0165668

decreased expression

Symbol Name Standardized Value
RPL23 ribosomal protein L23 -0.260898
RPL19 ribosomal protein L19 -0.119571
UBC ubiquitin C -0.0958716
TMSB10 thymosin beta 10 -0.0854328
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0825204
MT2A metallothionein 2A -0.0814525
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0775246
SLC38A1 solute carrier family 38, member 1 -0.0706162
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0629381
S100A9 S100 calcium binding protein A9 -0.055793
ACTG1 actin gamma 1 -0.0531448
AHNAK AHNAK nucleoprotein -0.0482794
PSMD3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 -0.0474425
CCNI cyclin I -0.0454519
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0452203
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0449437
S100A8 S100 calcium binding protein A8 -0.0444118
EEF2 eukaryotic translation elongation factor 2 -0.0439763
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 -0.0426938
PTMA prothymosin, alpha -0.0415429
SDC4 syndecan 4 -0.0407469
ABCC3 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 -0.0384415
SERPINB4 serpin peptidase inhibitor, clade B (ovalbumin), member 4 -0.0383008
SERPINB3 serpin peptidase inhibitor, clade B (ovalbumin), member 3 -0.0361317
CDK12 cyclin-dependent kinase 12 -0.0361167
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0360796
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0353952
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0353504
LOC112694756 uncharaterized LOC112694756 -0.0327581
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0323696
MYL12B myosin, light chain 12B, regulatory -0.0323491
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 -0.0322252
TMSB4X thymosin beta 4, X-linked -0.032146
RPS19 ribosomal protein S19 -0.0320692
RPL32 ribosomal protein L32 -0.0314826
S100A6 S100 calcium binding protein A6 -0.0302052
IER3 immediate early response 3 -0.0295874
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.0294449
JUN jun proto-oncogene -0.0288522
S100A7 S100 calcium binding protein A7 -0.0287638
TPT1 tumor protein, translationally-controlled 1 -0.0282585
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0281251
RPL8 ribosomal protein L8 -0.0272893
GRHL1 grainyhead-like 1 (Drosophila) -0.0265091
IGFBP5 insulin-like growth factor binding protein 5 -0.0255106
SPTSSA serine palmitoyltransferase, small subunit A -0.0254137
RPS3 ribosomal protein S3 -0.0250517
KRT8 keratin 8, type II -0.0249232
RPL34 ribosomal protein L34 -0.0244542
PFDN4 prefoldin subunit 4 -0.0243223
CBX3 chromobox homolog 3 -0.0239776
UBE2V1 ubiquitin-conjugating enzyme E2 variant 1 -0.0236833
MT1X metallothionein 1X -0.0236206
PDIA3 protein disulfide isomerase family A, member 3 -0.0235729
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric -0.0230536
EIF4A1 eukaryotic translation initiation factor 4A1 -0.022861
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0224444
NIPSNAP2 nipsnap homolog 2 -0.0224135
S100A10 S100 calcium binding protein A10 -0.0223536
GOLGA4 golgin A4 -0.0220372
PRRC2C proline-rich coiled-coil 2C -0.0218619
CCND1 cyclin D1 -0.0216543
KRT7 keratin 7, type II -0.0215582
CD63 CD63 molecule -0.021302
LMNA lamin A/C -0.0211489
MIEN1 migration and invasion enhancer 1 -0.0207156
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.020624
PSMB3 proteasome (prosome, macropain) subunit, beta type, 3 -0.0204778
TENM2 teneurin transmembrane protein 2 -0.0203695
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0202913
DUSP6 dual specificity phosphatase 6 -0.0201548
EXT1 exostosin glycosyltransferase 1 -0.0200602
ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) -0.0198548
UBE2Z ubiquitin-conjugating enzyme E2Z -0.019768
RPL35A ribosomal protein L35a -0.0196058
IPO7 importin 7 -0.0196018
LY6E lymphocyte antigen 6 complex, locus E -0.0195976
CD164 CD164 molecule, sialomucin -0.0192637
YBX3 Y box binding protein 3 -0.0192433
EIF1 eukaryotic translation initiation factor 1 -0.0191907
PDIA4 protein disulfide isomerase family A, member 4 -0.0190575
RPS13 ribosomal protein S13 -0.018975
SPDYA speedy/RINGO cell cycle regulator family member A -0.0187767
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa -0.0185069
RRBP1 ribosome binding protein 1 -0.0184579
VMP1 vacuole membrane protein 1 -0.0184007
FTH1 ferritin, heavy polypeptide 1 -0.0175351
PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) -0.0171704
HRNR hornerin -0.0169356
DOCK5 dedicator of cytokinesis 5 -0.0166315
ELL2 elongation factor, RNA polymerase II, 2 -0.0165425
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 -0.0165143
CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 -0.0163079
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0161237
TXNRD1 thioredoxin reductase 1 -0.0159703
FTL ferritin, light polypeptide -0.0159039
DSG2 desmoglein 2 -0.0158488
STK4 serine/threonine kinase 4 -0.0158159
AREG amphiregulin -0.0157542
ZFP36L1 ZFP36 ring finger protein-like 1 -0.0156633