Methylprednisolone succinate_MIA PaCa-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Methylprednisolone succinate perturbation in MIA PaCa-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Methylprednisolone succinate_MIA PaCa-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.130406
DST dystonin 0.129595
PSD3 pleckstrin and Sec7 domain containing 3 0.0953634
DLG1 discs, large homolog 1 (Drosophila) 0.0881407
CANX calnexin 0.0729025
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 0.0719414
CD44 CD44 molecule (Indian blood group) 0.0709406
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0709378
EHBP1 EH domain binding protein 1 0.0667374
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0660836
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.0654754
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0654646
TSC22D1 TSC22 domain family, member 1 0.0649409
RAI1 retinoic acid induced 1 0.064673
ERRFI1 ERBB receptor feedback inhibitor 1 0.064072
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 0.0635453
HLA-B major histocompatibility complex, class I, B 0.0597189
YEATS2 YEATS domain containing 2 0.0596839
MACF1 microtubule-actin crosslinking factor 1 0.0586294
EFNA5 ephrin-A5 0.0572895
LOXL2 lysyl oxidase-like 2 0.0563066
DPYD dihydropyrimidine dehydrogenase 0.0558769
SLC38A2 solute carrier family 38, member 2 0.0542004
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0524126
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 0.0498693
PGK1 phosphoglycerate kinase 1 0.0491351
RERE arginine-glutamic acid dipeptide (RE) repeats 0.046445
RAD51B RAD51 paralog B 0.0462718
SLK STE20-like kinase 0.0455747
EPHA4 EPH receptor A4 0.0446622
DOCK11 dedicator of cytokinesis 11 0.0443141
WARS1 tryptophanyl-tRNA synthetase 1 0.0442965
GNPDA1 glucosamine-6-phosphate deaminase 1 0.0440249
TMEM123 transmembrane protein 123 0.0438634
ADAM10 ADAM metallopeptidase domain 10 0.0429159
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 0.0428056
IFI6 interferon, alpha-inducible protein 6 0.0424464
ESYT2 extended synaptotagmin-like protein 2 0.0420966
FMNL2 formin-like 2 0.0408751
TPM4 tropomyosin 4 0.040635
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0404552
KPNB1 karyopherin (importin) beta 1 0.0398046
UBE2E3 ubiquitin-conjugating enzyme E2E 3 0.0396172
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0393047
LPP LIM domain containing preferred translocation partner in lipoma 0.038795
ZDHHC14 zinc finger, DHHC-type containing 14 0.0382251
RUNX1 runt-related transcription factor 1 0.0377583
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0377542
BCAR3 breast cancer anti-estrogen resistance 3 0.037547
NR2F1 nuclear receptor subfamily 2, group F, member 1 0.0372517
ARHGAP5 Rho GTPase activating protein 5 0.036592
AFF4 AF4/FMR2 family, member 4 0.0353396
MINDY2 MINDY lysine 48 deubiquitinase 2 0.0351796
ANXA2 annexin A2 0.0351408
CENPF centromere protein F, 350/400kDa 0.0351181
IL1RAPL1 interleukin 1 receptor accessory protein-like 1 0.035067
SQSTM1 sequestosome 1 0.0348981
BZW1 basic leucine zipper and W2 domains 1 0.0346965
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.0346302
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0341781
GCLM glutamate-cysteine ligase, modifier subunit 0.0337419
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0333358
RPL37A ribosomal protein L37a 0.0332527
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 0.0321762
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0321671
WWTR1 WW domain containing transcription regulator 1 0.0317704
EZR ezrin 0.0313416
ADGRG6 adhesion G protein-coupled receptor G6 0.0311076
PARP14 poly (ADP-ribose) polymerase family, member 14 0.0310845
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0310136
ERC1 ELKS/RAB6-interacting/CAST family member 1 0.0310049
TNS3 tensin 3 0.0306011
RPL12 ribosomal protein L12 0.0303604
RPS27 ribosomal protein S27 0.0301894
TTC3 tetratricopeptide repeat domain 3 0.0301312
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0297171
STXBP5 syntaxin binding protein 5 (tomosyn) 0.0291368
SFTPA2 surfactant protein A2 0.0289632
PYGL phosphorylase, glycogen, liver 0.0288305
RPS2 ribosomal protein S2 0.0287513
ANKRD17 ankyrin repeat domain 17 0.0285839
RAD50 RAD50 homolog (S. cerevisiae) 0.0285024
BPTF bromodomain PHD finger transcription factor 0.0284821
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0279477
RPLP0 ribosomal protein, large, P0 0.0277203
TP63 tumor protein p63 0.0276121
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.0275481
NAMPT nicotinamide phosphoribosyltransferase 0.0275248
GOLGB1 golgin B1 0.0268011
ADAR adenosine deaminase, RNA-specific 0.0267567
MBNL2 muscleblind-like splicing regulator 2 0.0266886
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 0.0265359
RPL11 ribosomal protein L11 0.0264938
BIRC2 baculoviral IAP repeat containing 2 0.0264479
SPATS2L spermatogenesis associated, serine-rich 2-like 0.025923
APP amyloid beta (A4) precursor protein 0.025867
KTN1 kinectin 1 (kinesin receptor) 0.025794
LRRC49 leucine rich repeat containing 49 0.0257442
DENND1A DENN/MADD domain containing 1A 0.0256087
ZNF217 zinc finger protein 217 0.0255785

decreased expression

Symbol Name Standardized Value
TMSB10 thymosin beta 10 -0.219827
UBC ubiquitin C -0.173762
MT2A metallothionein 2A -0.140431
VIM vimentin -0.121281
MT1X metallothionein 1X -0.116209
EEF2 eukaryotic translation elongation factor 2 -0.113606
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0957562
JUN jun proto-oncogene -0.0954027
TM4SF1 transmembrane 4 L six family member 1 -0.0909711
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.087078
RPS27A ribosomal protein S27a -0.0761322
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0724967
POTEF POTE ankyrin domain family, member F -0.062698
EIF4A1 eukaryotic translation initiation factor 4A1 -0.0597921
LOC112694756 uncharaterized LOC112694756 -0.0557759
S100A6 S100 calcium binding protein A6 -0.0446365
EMP1 epithelial membrane protein 1 -0.0393827
GARS1 glycyl-tRNA synthetase 1 -0.0348624
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0328701
PDIA4 protein disulfide isomerase family A, member 4 -0.0317543
HSPA9 heat shock 70kDa protein 9 (mortalin) -0.0317474
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0310781
TXNRD1 thioredoxin reductase 1 -0.0306821
SFPQ splicing factor proline/glutamine-rich -0.0285815
PCBP2 poly(rC) binding protein 2 -0.0283684
RPL23 ribosomal protein L23 -0.027983
EGR1 early growth response 1 -0.0277312
MCL1 myeloid cell leukemia 1 -0.0255139
S100A10 S100 calcium binding protein A10 -0.0248173
PDIA6 protein disulfide isomerase family A, member 6 -0.0247473
AHNAK AHNAK nucleoprotein -0.024421
ENO1 enolase 1, (alpha) -0.0238043
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0237956
RBM25 RNA binding motif protein 25 -0.0237047
DNTTIP1 deoxynucleotidyltransferase, terminal, interacting protein 1 -0.0236857
YBX3 Y box binding protein 3 -0.0236414
RHOA ras homolog family member A -0.0236264
PFN1 profilin 1 -0.0235332
SPDYA speedy/RINGO cell cycle regulator family member A -0.0232732
RPL18 ribosomal protein L18 -0.0228847
ACTG1 actin gamma 1 -0.022458
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0223909
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0223222
PRRC2C proline-rich coiled-coil 2C -0.0207621
RPLP2 ribosomal protein, large, P2 -0.0205762
RPS3 ribosomal protein S3 -0.0194175
RPS4X ribosomal protein S4, X-linked -0.0192618
CFLAR CASP8 and FADD-like apoptosis regulator -0.019081
SDC4 syndecan 4 -0.0189942
NAP1L1 nucleosome assembly protein 1-like 1 -0.0187805
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0185783
RPL5 ribosomal protein L5 -0.0185444
KPNA4 karyopherin alpha 4 (importin alpha 3) -0.0184751
VMP1 vacuole membrane protein 1 -0.0184652
FTL ferritin, light polypeptide -0.018244
CCT4 chaperonin containing TCP1, subunit 4 (delta) -0.0181612
RTN4 reticulon 4 -0.0177498
ZEB1 zinc finger E-box binding homeobox 1 -0.0177482
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) -0.0174319
HMGB2 high mobility group box 2 -0.0174093
MT1E metallothionein 1E -0.0172992
PABPN1 poly(A) binding protein, nuclear 1 -0.0172366
RPL32 ribosomal protein L32 -0.0172315
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) -0.0170835
MYL12B myosin, light chain 12B, regulatory -0.0170146
TIMP1 TIMP metallopeptidase inhibitor 1 -0.0169575
UBE2V2 ubiquitin-conjugating enzyme E2 variant 2 -0.0166693
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 -0.0163388
RPL15 ribosomal protein L15 -0.016118
HMGB1 high mobility group box 1 -0.0159701
RAB7A RAB7A, member RAS oncogene family -0.015907
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 -0.0158318
RPS15 ribosomal protein S15 -0.0158154
SF3B2 splicing factor 3b, subunit 2, 145kDa -0.0156513
UPP1 uridine phosphorylase 1 -0.0156308
RPL28 ribosomal protein L28 -0.0155563
GLS2 glutaminase 2 (liver, mitochondrial) -0.0155356
MCTP1 multiple C2 domains, transmembrane 1 -0.015218
SEC16A SEC16 homolog A (S. cerevisiae) -0.0151653
CERS2 ceramide synthase 2 -0.0151511
RPL8 ribosomal protein L8 -0.0150311
DDIT4 DNA-damage-inducible transcript 4 -0.0149
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa -0.0146998
NFE2L2 nuclear factor, erythroid 2-like 2 -0.0146786
RPS24 ribosomal protein S24 -0.0142483
KHSRP KH-type splicing regulatory protein -0.0142154
BAZ1A bromodomain adjacent to zinc finger domain, 1A -0.0140622
ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide -0.0139274
BRD2 bromodomain containing 2 -0.0137091
CALM3 calmodulin 3 (phosphorylase kinase, delta) -0.013615
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 -0.0133449
TOP2A topoisomerase (DNA) II alpha 170kDa -0.013265
PSMD14 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 -0.0132542
EIF1 eukaryotic translation initiation factor 1 -0.0132173
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.0131396
HNRNPUL2 heterogeneous nuclear ribonucleoprotein U-like 2 -0.0130816
SON SON DNA binding protein -0.0130255
ACSL3 acyl-CoA synthetase long-chain family member 3 -0.0126976
SET SET nuclear proto-oncogene -0.0125993
RECQL RecQ helicase-like -0.0125702