Minodronic acid_A-172 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Minodronic acid perturbation in A-172 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Minodronic acid_A-172 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.193085
MYH9 myosin, heavy chain 9, non-muscle 0.134543
CD44 CD44 molecule (Indian blood group) 0.100869
TRIO trio Rho guanine nucleotide exchange factor 0.0912746
PLAT plasminogen activator, tissue 0.0799719
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.076908
DST dystonin 0.0729013
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0675674
APP amyloid beta (A4) precursor protein 0.0626686
TNIP1 TNFAIP3 interacting protein 1 0.0621978
PODXL podocalyxin-like 0.0606865
NAV1 neuron navigator 1 0.0585974
AHNAK AHNAK nucleoprotein 0.0581214
PLEC plectin 0.0580247
RNF213 ring finger protein 213 0.0575831
FLNB filamin B, beta 0.0573631
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 0.0531439
FNDC3B fibronectin type III domain containing 3B 0.0526023
RSAD2 radical S-adenosyl methionine domain containing 2 0.0521745
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0520336
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0506054
MX2 MX dynamin-like GTPase 2 0.0485362
FSTL1 follistatin-like 1 0.0483031
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0476084
NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) 0.0459158
SEPTIN9 septin 9 0.0448369
FBN1 fibrillin 1 0.0433665
PARP14 poly (ADP-ribose) polymerase family, member 14 0.04224
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0393809
MSN moesin 0.0389322
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0383456
GLIS3 GLIS family zinc finger 3 0.0377608
ERRFI1 ERBB receptor feedback inhibitor 1 0.0375662
MPRIP myosin phosphatase Rho interacting protein 0.0375268
RIGI RNA sensor RIG-I 0.0373767
COL3A1 collagen, type III, alpha 1 0.0373032
SFTPA2 surfactant protein A2 0.0368818
PRELID2 PRELI domain containing 2 0.0368021
KLF7 Kruppel-like factor 7 (ubiquitous) 0.0355282
SMAD3 SMAD family member 3 0.0350284
TPM3 tropomyosin 3 0.0337361
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0332334
RHOBTB3 Rho-related BTB domain containing 3 0.0330117
ADAR adenosine deaminase, RNA-specific 0.0328166
IL6ST interleukin 6 signal transducer 0.0327784
PRSS23 protease, serine, 23 0.0323797
HDAC9 histone deacetylase 9 0.031976
IFIH1 interferon induced with helicase C domain 1 0.0319515
NUMA1 nuclear mitotic apparatus protein 1 0.0318374
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 0.0316578
ZBTB20 zinc finger and BTB domain containing 20 0.0316148
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.0312464
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 0.0312361
RUNX1 runt-related transcription factor 1 0.0310378
EXT1 exostosin glycosyltransferase 1 0.0306238
ITPRID2 ITPR interacting domain containing 2 0.0304118
WWTR1 WW domain containing transcription regulator 1 0.0296288
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0295507
ZNFX1 zinc finger, NFX1-type containing 1 0.0295397
PRRC2C proline-rich coiled-coil 2C 0.029417
FAM219A family with sequence similarity 219, member A 0.0293499
OGA O-GlcNAcase 0.0291429
ASPH aspartate beta-hydroxylase 0.0287579
MYOF myoferlin 0.028597
PSD3 pleckstrin and Sec7 domain containing 3 0.0277287
FLNA filamin A, alpha 0.0276694
LPP LIM domain containing preferred translocation partner in lipoma 0.0274175
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.0273179
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.0272879
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0271872
NCOR2 nuclear receptor corepressor 2 0.0270982
SVIL supervillin 0.0270669
DDX60L DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like 0.0269148
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0268315
SRRM2 serine/arginine repetitive matrix 2 0.0267733
OSMR oncostatin M receptor 0.0263876
SH3KBP1 SH3-domain kinase binding protein 1 0.0257256
MB21D2 Mab-21 domain containing 2 0.0256731
DOCK5 dedicator of cytokinesis 5 0.0256633
FRMD5 FERM domain containing 5 0.0254557
NONO non-POU domain containing, octamer-binding 0.0249775
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0248506
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0248171
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.0247992
SMYD3 SET and MYND domain containing 3 0.024565
SDC4 syndecan 4 0.0244984
GPC6 glypican 6 0.024374
ZNF217 zinc finger protein 217 0.024299
H1-4 H1.4 linker histone, cluster member 0.0240822
SBF2 SET binding factor 2 0.0238235
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0236897
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0236349
TDRD7 tudor domain containing 7 0.0235867
GIGYF2 GRB10 interacting GYF protein 2 0.0234606
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0233752
DPYSL2 dihydropyrimidinase-like 2 0.0233175
PDE4D phosphodiesterase 4D, cAMP-specific 0.0233109
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0231397
RAI14 retinoic acid induced 14 0.0231072
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0229532

decreased expression

Symbol Name Standardized Value
IGFBP3 insulin-like growth factor binding protein 3 -0.332461
VIM vimentin -0.20813
TMSB10 thymosin beta 10 -0.091049
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0834356
ZFP36L1 ZFP36 ring finger protein-like 1 -0.0830913
CSTB cystatin B (stefin B) -0.0825733
LOX lysyl oxidase -0.0769383
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.0761621
S100A6 S100 calcium binding protein A6 -0.0715862
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0713623
POTEF POTE ankyrin domain family, member F -0.0691213
ABI3BP ABI family, member 3 (NESH) binding protein -0.0636958
SUCNR1 succinate receptor 1 -0.0567152
MYADM myeloid-associated differentiation marker -0.0561451
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0516553
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.0500936
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0478488
TPM4 tropomyosin 4 -0.0463215
FTH1 ferritin, heavy polypeptide 1 -0.0458019
DLG1 discs, large homolog 1 (Drosophila) -0.0437473
B2M beta-2-microglobulin -0.0429946
CCND1 cyclin D1 -0.0420599
TAGLN2 transgelin 2 -0.0410703
UBC ubiquitin C -0.0405389
FTL ferritin, light polypeptide -0.0383135
PFN1 profilin 1 -0.0380621
TIMP2 TIMP metallopeptidase inhibitor 2 -0.035425
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0344013
FOSL1 FOS-like antigen 1 -0.0335438
RAB7A RAB7A, member RAS oncogene family -0.0326852
HSPB1 heat shock 27kDa protein 1 -0.0318764
INSIG1 insulin induced gene 1 -0.0312081
NDRG1 N-myc downstream regulated 1 -0.0300284
FBXO11 F-box protein 11 -0.0297624
S100A4 S100 calcium binding protein A4 -0.0292324
PPDPF pancreatic progenitor cell differentiation and proliferation factor -0.0287562
MRPS6 mitochondrial ribosomal protein S6 -0.0287279
IARS1 isoleucyl-tRNA synthetase 1 -0.0269326
CENPF centromere protein F, 350/400kDa -0.026766
GOLGA4 golgin A4 -0.0261289
RPL35A ribosomal protein L35a -0.0252722
C12ORF75 chromosome 12 open reading frame 75 -0.0250373
BHLHE40 basic helix-loop-helix family, member e40 -0.0247373
L1CAM L1 cell adhesion molecule -0.0246101
FLT1 fms-related tyrosine kinase 1 -0.0245971
RPL28 ribosomal protein L28 -0.0243912
SORBS2 sorbin and SH3 domain containing 2 -0.0241051
MSI2 musashi RNA-binding protein 2 -0.0239628
BSG basigin (Ok blood group) -0.023015
LIMS1 LIM and senescent cell antigen-like domains 1 -0.0228532
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) -0.0227363
VDAC1 voltage-dependent anion channel 1 -0.0226887
ZEB1 zinc finger E-box binding homeobox 1 -0.0226842
EGFR epidermal growth factor receptor -0.0224706
UBE2R2 ubiquitin-conjugating enzyme E2R 2 -0.0224104
CDC42EP3 CDC42 effector protein (Rho GTPase binding) 3 -0.0223877
SLC39A11 solute carrier family 39, member 11 -0.0218406
ZNF207 zinc finger protein 207 -0.0216791
SEC61G Sec61 gamma subunit -0.0214248
PDIA3 protein disulfide isomerase family A, member 3 -0.0212353
UBXN4 UBX domain protein 4 -0.0208151
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.0207066
AKAP12 A kinase (PRKA) anchor protein 12 -0.0206388
LGALS1 lectin, galactoside-binding, soluble, 1 -0.0205139
LMNA lamin A/C -0.0200972
TTC3 tetratricopeptide repeat domain 3 -0.01997
HLA-A major histocompatibility complex, class I, A -0.0197981
CYTH3 cytohesin 3 -0.0197043
KRT81 keratin 81, type II -0.0195857
KDM5B lysine (K)-specific demethylase 5B -0.0195751
VKORC1 vitamin K epoxide reductase complex, subunit 1 -0.0193568
MAP1B microtubule-associated protein 1B -0.0189355
GNB2 guanine nucleotide binding protein (G protein), beta polypeptide 2 -0.018869
RPS6KA2 ribosomal protein S6 kinase, 90kDa, polypeptide 2 -0.0188306
BTG1 B-cell translocation gene 1, anti-proliferative -0.0187247
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0182772
S100A9 S100 calcium binding protein A9 -0.0182748
GDF15 growth differentiation factor 15 -0.0181166
SEPTIN7 septin 7 -0.0176945
LRRC17 leucine rich repeat containing 17 -0.0175127
CYB5R3 cytochrome b5 reductase 3 -0.0175125
VAT1 vesicle amine transport 1 -0.0169026
GARS1 glycyl-tRNA synthetase 1 -0.0167287
PPIG peptidylprolyl isomerase G (cyclophilin G) -0.0167021
ENO2 enolase 2 (gamma, neuronal) -0.0166944
ACTG1 actin gamma 1 -0.0166416
HM13 histocompatibility (minor) 13 -0.0166134
RALA v-ral simian leukemia viral oncogene homolog A (ras related) -0.0164018
MTDH metadherin -0.0161601
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0160378
SRSF3 serine/arginine-rich splicing factor 3 -0.0160058
GADD45B growth arrest and DNA-damage-inducible, beta -0.0160043
CD151 CD151 molecule (Raph blood group) -0.0159617
MBOAT2 membrane bound O-acyltransferase domain containing 2 -0.0159085
ACBD3 acyl-CoA binding domain containing 3 -0.0158376
RPL34 ribosomal protein L34 -0.0155858
MNT MAX network transcriptional repressor -0.0155004
COL8A1 collagen, type VIII, alpha 1 -0.0152717
FAM114A1 family with sequence similarity 114, member A1 -0.0152523
IL32 interleukin 32 -0.0151007