Minodronic acid_HCT15 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Minodronic acid perturbation in HCT15 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Minodronic acid_HCT15 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
MYH9 myosin, heavy chain 9, non-muscle 0.241987
AHNAK AHNAK nucleoprotein 0.122242
PLEC plectin 0.10622
KRT18 keratin 18, type I 0.0837734
DSCAM Down syndrome cell adhesion molecule 0.0798478
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.071415
LOC112694756 uncharaterized LOC112694756 0.0706889
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0681444
EZR ezrin 0.067971
PRELID2 PRELI domain containing 2 0.0656135
KRT8 keratin 8, type II 0.065215
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0619337
NUMA1 nuclear mitotic apparatus protein 1 0.0618507
H1-4 H1.4 linker histone, cluster member 0.0603299
TPT1 tumor protein, translationally-controlled 1 0.0602333
SMYD3 SET and MYND domain containing 3 0.0602045
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0562744
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0554412
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0515503
RPL3 ribosomal protein L3 0.0491873
MACF1 microtubule-actin crosslinking factor 1 0.0486295
CTNND1 catenin (cadherin-associated protein), delta 1 0.0484295
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0480457
SDC4 syndecan 4 0.0471167
HSPA8 heat shock 70kDa protein 8 0.0452725
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0451208
SEPTIN9 septin 9 0.0450275
TENM3 teneurin transmembrane protein 3 0.0447232
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0446173
APP amyloid beta (A4) precursor protein 0.0444743
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0429789
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0429467
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0409975
EEF2 eukaryotic translation elongation factor 2 0.0402633
SFTPA2 surfactant protein A2 0.0394192
TMSB10 thymosin beta 10 0.0392493
MCL1 myeloid cell leukemia 1 0.0392008
FHIT fragile histidine triad 0.0391107
FLNA filamin A, alpha 0.0382798
EIF3A eukaryotic translation initiation factor 3, subunit A 0.038004
MPRIP myosin phosphatase Rho interacting protein 0.0376687
ASPH aspartate beta-hydroxylase 0.0376562
NONO non-POU domain containing, octamer-binding 0.0375367
RPS3 ribosomal protein S3 0.0361313
APLP2 amyloid beta (A4) precursor-like protein 2 0.0358061
SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 0.0357078
DOCK5 dedicator of cytokinesis 5 0.035523
TJP1 tight junction protein 1 0.0354103
UBR4 ubiquitin protein ligase E3 component n-recognin 4 0.0353303
JUN jun proto-oncogene 0.0351862
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.035151
VCL vinculin 0.0350377
WNK1 WNK lysine deficient protein kinase 1 0.0350136
RBBP6 retinoblastoma binding protein 6 0.0345986
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0344352
RPL35 ribosomal protein L35 0.0338483
RNF213 ring finger protein 213 0.0334605
HYOU1 hypoxia up-regulated 1 0.0320192
SUMF1 sulfatase modifying factor 1 0.0318673
AFDN afadin, adherens junction formation factor 0.0318049
RRM2 ribonucleotide reductase M2 0.031056
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0310358
OGA O-GlcNAcase 0.0308895
RPS12 ribosomal protein S12 0.0303938
PRRC2B proline-rich coiled-coil 2B 0.0295096
H1-2 H1.2 linker histone, cluster member 0.0290576
KLC1 kinesin light chain 1 0.0290227
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0289591
FLNB filamin B, beta 0.028689
GALNT2 polypeptide N-acetylgalactosaminyltransferase 2 0.028415
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0284149
ATF3 activating transcription factor 3 0.0284119
PLAUR plasminogen activator, urokinase receptor 0.0282073
UTRN utrophin 0.0281245
DOCK1 dedicator of cytokinesis 1 0.0278503
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0275282
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.027526
RPL13A ribosomal protein L13a 0.0271664
SSH2 slingshot protein phosphatase 2 0.0271299
ATXN1 ataxin 1 0.027111
WWC2 WW and C2 domain containing 2 0.027045
CTTN cortactin 0.0268477
CALR calreticulin 0.0267685
MACROD2 MACRO domain containing 2 0.0267119
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0265788
PATJ PATJ crumbs cell polarity complex component 0.0265033
DST dystonin 0.0263583
HLA-B major histocompatibility complex, class I, B 0.0263341
S100A10 S100 calcium binding protein A10 0.0261351
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.0260244
SHB Src homology 2 domain containing adaptor protein B 0.0259773
GOLGA3 golgin A3 0.0257253
HDLBP high density lipoprotein binding protein 0.025381
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.02517
TRAPPC9 trafficking protein particle complex 9 0.025118
ZFAND3 zinc finger, AN1-type domain 3 0.0251122
ZSWIM6 zinc finger, SWIM-type containing 6 0.0249545
EHMT1 euchromatic histone-lysine N-methyltransferase 1 0.0249
RPL6 ribosomal protein L6 0.0248819
PARD3B par-3 family cell polarity regulator beta 0.024814

decreased expression

Symbol Name Standardized Value
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.117281
P4HB prolyl 4-hydroxylase, beta polypeptide -0.116608
NDRG1 N-myc downstream regulated 1 -0.0928157
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0846119
GOLGA4 golgin A4 -0.077145
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0736338
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0715573
HMGA1 high mobility group AT-hook 1 -0.0650395
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0594141
PTMA prothymosin, alpha -0.0547837
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0522845
FTH1 ferritin, heavy polypeptide 1 -0.049675
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0470611
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0464138
TUBA1B tubulin, alpha 1b -0.0447933
SRP54 signal recognition particle 54kDa -0.0433874
PCBP2 poly(rC) binding protein 2 -0.0432859
RPL35A ribosomal protein L35a -0.04016
POTEF POTE ankyrin domain family, member F -0.0397782
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0388678
KPNB1 karyopherin (importin) beta 1 -0.0378472
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 -0.0374346
UBA6 ubiquitin-like modifier activating enzyme 6 -0.0347014
GARS1 glycyl-tRNA synthetase 1 -0.0344454
WDR45B WD repeat domain 45B -0.034434
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0329174
HSPA9 heat shock 70kDa protein 9 (mortalin) -0.0319711
NUP58 nucleoporin 58 -0.0317796
FHIP1A FHF complex subunit HOOK interacting protein 1A -0.0316006
RNMT RNA (guanine-7-) methyltransferase -0.0313513
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0310341
IARS1 isoleucyl-tRNA synthetase 1 -0.0307807
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0298219
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0295717
DIAPH3 diaphanous-related formin 3 -0.0284526
WASF2 WAS protein family, member 2 -0.0283976
KMT2E lysine (K)-specific methyltransferase 2E -0.0278432
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha -0.0267113
SEC24A SEC24 family member A -0.0265714
LDHB lactate dehydrogenase B -0.0264654
MYADM myeloid-associated differentiation marker -0.0261703
RPL5 ribosomal protein L5 -0.0261199
PFN1 profilin 1 -0.0260135
FTL ferritin, light polypeptide -0.0256622
HLA-A major histocompatibility complex, class I, A -0.0253832
ZNF292 zinc finger protein 292 -0.0253612
TMEM123 transmembrane protein 123 -0.0245395
LMAN1 lectin, mannose-binding, 1 -0.024276
CANX calnexin -0.0240424
PAICS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase -0.0236261
SPDYA speedy/RINGO cell cycle regulator family member A -0.0235186
CBX3 chromobox homolog 3 -0.0232703
CNOT2 CCR4-NOT transcription complex, subunit 2 -0.0231978
BAZ2A bromodomain adjacent to zinc finger domain, 2A -0.0231443
RPLP0 ribosomal protein, large, P0 -0.0231052
TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase -0.0231008
SUCO SUN domain containing ossification factor -0.0227956
PDIA3 protein disulfide isomerase family A, member 3 -0.0227382
SCARB1 scavenger receptor class B, member 1 -0.0226421
TAPBP TAP binding protein (tapasin) -0.0224941
YBX1 Y box binding protein 1 -0.0222794
RACK1 receptor for activated C kinase 1 -0.0220452
TTC3 tetratricopeptide repeat domain 3 -0.0216915
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) -0.0215335
CLDN7 claudin 7 -0.0214659
MXI1 MAX interactor 1, dimerization protein -0.0212037
GNAS GNAS complex locus -0.0211737
ACBD3 acyl-CoA binding domain containing 3 -0.0210028
ENO1 enolase 1, (alpha) -0.0208102
SEC31A SEC31 homolog A (S. cerevisiae) -0.0207695
S100A6 S100 calcium binding protein A6 -0.0206976
SMC4 structural maintenance of chromosomes 4 -0.020642
MKI67 marker of proliferation Ki-67 -0.0206305
RPS6 ribosomal protein S6 -0.0203258
HERPUD1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 -0.0201425
BIRC6 baculoviral IAP repeat containing 6 -0.0199196
PERP PERP, TP53 apoptosis effector -0.0196089
CACNB4 calcium channel, voltage-dependent, beta 4 subunit -0.0195953
U2SURP U2 snRNP-associated SURP domain containing -0.0194185
HOXB9 homeobox B9 -0.0193429
COG6 component of oligomeric golgi complex 6 -0.0192909
PLP2 proteolipid protein 2 (colonic epithelium-enriched) -0.018997
MTDH metadherin -0.0188916
COPB2 coatomer protein complex, subunit beta 2 (beta prime) -0.0188268
MBNL2 muscleblind-like splicing regulator 2 -0.0187342
SCFD1 sec1 family domain containing 1 -0.0186162
ZNF395 zinc finger protein 395 -0.018493
RCOR1 REST corepressor 1 -0.0182589
PTEN phosphatase and tensin homolog -0.0182402
RPS14 ribosomal protein S14 -0.0181952
RPL27A ribosomal protein L27a -0.018186
SETD5 SET domain containing 5 -0.0181305
ATF4 activating transcription factor 4 -0.0180215
CERT1 ceramide transporter 1 -0.0178726
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0176796
HILPDA hypoxia inducible lipid droplet-associated -0.0174291
ESYT2 extended synaptotagmin-like protein 2 -0.0173665
RPL21 ribosomal protein L21 -0.0173649
VEGFA vascular endothelial growth factor A -0.0173283
WDR43 WD repeat domain 43 -0.0172192