Minodronic acid_J82 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Minodronic acid perturbation in J82 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Minodronic acid_J82 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FN1 fibronectin 1 0.132318
EXT1 exostosin glycosyltransferase 1 0.12371
NALF1 NALCN channel auxiliary factor 1 0.118845
MYH9 myosin, heavy chain 9, non-muscle 0.111463
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0999106
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0817423
MT2A metallothionein 2A 0.0805176
AKAP12 A kinase (PRKA) anchor protein 12 0.0699273
ASPH aspartate beta-hydroxylase 0.0656911
CD44 CD44 molecule (Indian blood group) 0.0646083
ERBIN erbb2 interacting protein 0.0550286
PHACTR1 phosphatase and actin regulator 1 0.0526294
TRIO trio Rho guanine nucleotide exchange factor 0.0514935
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0474497
DST dystonin 0.0474291
FLNB filamin B, beta 0.0447094
AHNAK AHNAK nucleoprotein 0.0441458
IGFBP3 insulin-like growth factor binding protein 3 0.0441195
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.043907
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 0.0414841
ENO1 enolase 1, (alpha) 0.0414812
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.0405299
MSN moesin 0.0392574
ACTG1 actin gamma 1 0.0384975
LPP LIM domain containing preferred translocation partner in lipoma 0.0365396
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0360557
VIM vimentin 0.0345928
ACTN1 actinin, alpha 1 0.0342213
HLA-B major histocompatibility complex, class I, B 0.0337593
PODXL podocalyxin-like 0.0337534
TMSB10 thymosin beta 10 0.0331117
SIPA1L3 signal-induced proliferation-associated 1 like 3 0.0322936
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.032168
PTK2 protein tyrosine kinase 2 0.0320476
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta 0.0317228
ABI3BP ABI family, member 3 (NESH) binding protein 0.0312222
SMYD3 SET and MYND domain containing 3 0.0308485
NAV2 neuron navigator 2 0.0301969
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0297019
RPS6 ribosomal protein S6 0.0296288
SET SET nuclear proto-oncogene 0.0292401
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.0290616
WNT5B wingless-type MMTV integration site family, member 5B 0.0289787
VCL vinculin 0.0286992
RAI14 retinoic acid induced 14 0.0286447
INTS6 integrator complex subunit 6 0.0281184
ZSWIM6 zinc finger, SWIM-type containing 6 0.0273182
TPM1 tropomyosin 1 (alpha) 0.0269883
MACF1 microtubule-actin crosslinking factor 1 0.0264688
RBMS3 RNA binding motif, single stranded interacting protein 3 0.0263083
COL5A1 collagen, type V, alpha 1 0.0262243
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0256883
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0249623
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 0.0247291
RAD51B RAD51 paralog B 0.0245
PTPRG protein tyrosine phosphatase, receptor type, G 0.0244523
MICAL2 microtubule associated monooxygenase, calponin and LIM domain containing 2 0.0244221
NAV1 neuron navigator 1 0.0244083
CCND1 cyclin D1 0.0241124
PRELID2 PRELI domain containing 2 0.0240399
RNF213 ring finger protein 213 0.0240189
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 0.0240168
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0239376
CAVIN1 caveolae associated protein 1 0.0237596
ZNF432 zinc finger protein 432 0.0235104
SLIT2 slit homolog 2 (Drosophila) 0.0234629
PLEC plectin 0.0234504
ANXA2 annexin A2 0.0232957
FNDC3B fibronectin type III domain containing 3B 0.0232757
PKM pyruvate kinase, muscle 0.0231383
TMSB4X thymosin beta 4, X-linked 0.0231027
PDLIM5 PDZ and LIM domain 5 0.0229044
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0228375
THSD4 thrombospondin, type I, domain containing 4 0.0218026
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 0.0217851
KRT7 keratin 7, type II 0.0217196
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A 0.0216992
TPM3 tropomyosin 3 0.0214768
FLNA filamin A, alpha 0.0211126
TLE4 transducin-like enhancer of split 4 0.0208668
CD59 CD59 molecule, complement regulatory protein 0.0207346
TNIP1 TNFAIP3 interacting protein 1 0.020691
LIMCH1 LIM and calponin homology domains 1 0.0206908
PTPRF protein tyrosine phosphatase, receptor type, F 0.0206252
CALD1 caldesmon 1 0.0206072
TENM3 teneurin transmembrane protein 3 0.0205442
FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) 0.0202749
SDK1 sidekick cell adhesion molecule 1 0.0201918
DOCK5 dedicator of cytokinesis 5 0.0200782
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) 0.0200134
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0199008
RALY RALY heterogeneous nuclear ribonucleoprotein 0.0195854
NCOR2 nuclear receptor corepressor 2 0.0194232
CLIC4 chloride intracellular channel 4 0.0193207
FHIT fragile histidine triad 0.0192016
SEPTIN9 septin 9 0.0191346
TPT1 tumor protein, translationally-controlled 1 0.0188637
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.0187013
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0186179
FOXP1 forkhead box P1 0.0186141

decreased expression

Symbol Name Standardized Value
UGCG UDP-glucose ceramide glucosyltransferase -0.0647738
FTH1 ferritin, heavy polypeptide 1 -0.0547833
FTL ferritin, light polypeptide -0.0503647
ATP13A3 ATPase type 13A3 -0.0316198
NUP58 nucleoporin 58 -0.0294627
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0290187
GOLGA4 golgin A4 -0.0285733
UBA6 ubiquitin-like modifier activating enzyme 6 -0.0284685
NDRG1 N-myc downstream regulated 1 -0.023611
SOD2 superoxide dismutase 2, mitochondrial -0.0219195
CCNL1 cyclin L1 -0.0204965
ARF4 ADP-ribosylation factor 4 -0.0204377
PLIN2 perilipin 2 -0.0198896
NAMPT nicotinamide phosphoribosyltransferase -0.0194442
SRP54 signal recognition particle 54kDa -0.0188448
SUCO SUN domain containing ossification factor -0.0176636
TSC22D2 TSC22 domain family, member 2 -0.0176067
ADM adrenomedullin -0.0175869
TFG TRK-fused gene -0.0170063
SEC61A1 Sec61 alpha 1 subunit (S. cerevisiae) -0.0167684
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0166257
HILPDA hypoxia inducible lipid droplet-associated -0.0161361
SPAG9 sperm associated antigen 9 -0.0160868
USP3 ubiquitin specific peptidase 3 -0.0155017
DPM1 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit -0.0154586
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha -0.0152301
NOP58 NOP58 ribonucleoprotein -0.0149979
KMT2E lysine (K)-specific methyltransferase 2E -0.0147005
RLF rearranged L-myc fusion -0.0146658
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0143553
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.014157
ZNF292 zinc finger protein 292 -0.0137453
BHLHE40 basic helix-loop-helix family, member e40 -0.0136846
DENND4C DENN/MADD domain containing 4C -0.0134733
TPD52 tumor protein D52 -0.013394
PTBP3 polypyrimidine tract binding protein 3 -0.0124838
NPEPPS aminopeptidase puromycin sensitive -0.0122751
SEC24A SEC24 family member A -0.0122147
WDR45B WD repeat domain 45B -0.0122126
RYBP RING1 and YY1 binding protein -0.0118847
UFM1 ubiquitin-fold modifier 1 -0.0117702
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 -0.0115039
ARRDC3 arrestin domain containing 3 -0.0112497
COPB1 coatomer protein complex, subunit beta 1 -0.0111957
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0111614
MARCHF6 membrane associated ring-CH-type finger 6 -0.0110919
MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 -0.0109537
ZFP36L1 ZFP36 ring finger protein-like 1 -0.010947
LCORL ligand dependent nuclear receptor corepressor-like -0.010841
QKI QKI, KH domain containing, RNA binding -0.0106995
RAB18 RAB18, member RAS oncogene family -0.0106865
ANKRD10 ankyrin repeat domain 10 -0.010547
ZMYM2 zinc finger, MYM-type 2 -0.010397
RIOK3 RIO kinase 3 -0.0103279
MLF1 myeloid leukemia factor 1 -0.0101046
NUP153 nucleoporin 153kDa -0.0100296
BTG1 B-cell translocation gene 1, anti-proliferative -0.0100114
ADAM9 ADAM metallopeptidase domain 9 -0.00999303
LOX lysyl oxidase -0.00999111
WSB1 WD repeat and SOCS box containing 1 -0.00982216
KDM3A lysine (K)-specific demethylase 3A -0.00972444
RAB8B RAB8B, member RAS oncogene family -0.00962811
INSIG2 insulin induced gene 2 -0.00961992
ESYT2 extended synaptotagmin-like protein 2 -0.0095747
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.00939079
MINDY2 MINDY lysine 48 deubiquitinase 2 -0.00932426
DNAJC25 DnaJ (Hsp40) homolog, subfamily C , member 25 -0.00904117
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type -0.00903978
SEC31A SEC31 homolog A (S. cerevisiae) -0.00898288
TRAM1 translocation associated membrane protein 1 -0.00897421
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta -0.00892228
TBC1D23 TBC1 domain family, member 23 -0.00878011
CTSD cathepsin D -0.00876125
TMEM41B transmembrane protein 41B -0.00872978
RNMT RNA (guanine-7-) methyltransferase -0.00871979
ANXA1 annexin A1 -0.00871904
JUN jun proto-oncogene -0.00869883
HELZ helicase with zinc finger -0.00868647
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.00867369
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.00867178
IARS1 isoleucyl-tRNA synthetase 1 -0.0086572
EIF2A eukaryotic translation initiation factor 2A, 65kDa -0.00864902
DHX36 DEAH (Asp-Glu-Ala-His) box polypeptide 36 -0.00847634
WTAP Wilms tumor 1 associated protein -0.00839476
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.00838085
TGFB2 transforming growth factor, beta 2 -0.00832828
FOSL1 FOS-like antigen 1 -0.00830272
RICTOR RPTOR independent companion of MTOR, complex 2 -0.00829167
COG5 component of oligomeric golgi complex 5 -0.00827818
KDM5B lysine (K)-specific demethylase 5B -0.00825224
SPTY2D1 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae) -0.00821758
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.00815786
PJA2 praja ring finger 2, E3 ubiquitin protein ligase -0.00813777
ADAM17 ADAM metallopeptidase domain 17 -0.00812979
WAC WW domain containing adaptor with coiled-coil -0.00808461
PLK2 polo-like kinase 2 -0.00807039
RNF145 ring finger protein 145 -0.00796106
OLA1 Obg-like ATPase 1 -0.00794768
ECT2 epithelial cell transforming 2 -0.00786749
COG6 component of oligomeric golgi complex 6 -0.0078625