Minodronic acid_PANC-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Minodronic acid perturbation in PANC-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Minodronic acid_PANC-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
VCL vinculin 0.0918234
AKAP12 A kinase (PRKA) anchor protein 12 0.0859425
EGR1 early growth response 1 0.0358451
FBL fibrillarin 0.0346352
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0343866
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0334169
VIM vimentin 0.0283505
MACF1 microtubule-actin crosslinking factor 1 0.0243459
MCL1 myeloid cell leukemia 1 0.022548
THSD4 thrombospondin, type I, domain containing 4 0.0221812
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0205794
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.0187896
INTS6 integrator complex subunit 6 0.0172318
PLEKHG2 pleckstrin homology domain containing, family G (with RhoGef domain) member 2 0.0166427
SRRM2 serine/arginine repetitive matrix 2 0.0150866
SFTPA2 surfactant protein A2 0.0150411
AKT2 v-akt murine thymoma viral oncogene homolog 2 0.0147586
TPM1 tropomyosin 1 (alpha) 0.0146304
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0144882
SAMD4B sterile alpha motif domain containing 4B 0.0143809
ANKRD11 ankyrin repeat domain 11 0.013975
MYO1E myosin IE 0.0136628
MSN moesin 0.0134018
ZSWIM6 zinc finger, SWIM-type containing 6 0.0131224
PDLIM5 PDZ and LIM domain 5 0.0128881
MYH9 myosin, heavy chain 9, non-muscle 0.0121582
VEGFA vascular endothelial growth factor A 0.0121029
SEPTIN9 septin 9 0.0117965
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0117212
UBASH3B ubiquitin associated and SH3 domain containing B 0.0116293
HMGA2 high mobility group AT-hook 2 0.0115813
DST dystonin 0.0111476
PFN1 profilin 1 0.0107484
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 0.0106829
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 0.0105591
APLP2 amyloid beta (A4) precursor-like protein 2 0.0105446
ANGPTL4 angiopoietin-like 4 0.010485
NUP98 nucleoporin 98kDa 0.010466
SLC35F3 solute carrier family 35, member F3 0.0101923
MSRB3 methionine sulfoxide reductase B3 0.00988673
AKAP13 A kinase (PRKA) anchor protein 13 0.00950051
CAPZB capping protein (actin filament) muscle Z-line, beta 0.00949316
RSU1 Ras suppressor protein 1 0.00942554
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.00941231
POTEF POTE ankyrin domain family, member F 0.00916241
HDAC9 histone deacetylase 9 0.00911608
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme 0.00891322
TRIP12 thyroid hormone receptor interactor 12 0.00880221
PLEC plectin 0.008708
TNRC18 trinucleotide repeat containing 18 0.00868352
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 0.00847562
ACTG1 actin gamma 1 0.00820662
NHSL1 NHS-like 1 0.00817992
HMGA1 high mobility group AT-hook 1 0.00815907
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.00810371
LOC102724023 ES1 protein homolog, mitochondrial 0.00802045
MYO10 myosin X 0.0080079
ATG7 autophagy related 7 0.00799383
ACTN1 actinin, alpha 1 0.00798865
NCOR2 nuclear receptor corepressor 2 0.00797298
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.00789901
ZFP36 ZFP36 ring finger protein 0.00783599
FTL ferritin, light polypeptide 0.00767304
MAP1B microtubule-associated protein 1B 0.00762665
CTSD cathepsin D 0.00757657
JUN jun proto-oncogene 0.00749963
CENPF centromere protein F, 350/400kDa 0.00747836
LPP LIM domain containing preferred translocation partner in lipoma 0.00745854
RNF220 ring finger protein 220 0.00744083
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.00736181
MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 0.00733599
MYADM myeloid-associated differentiation marker 0.00728123
HSPG2 heparan sulfate proteoglycan 2 0.00712856
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 0.00709915
FERMT2 fermitin family member 2 0.00709682
FBXO17 F-box protein 17 0.00698423
EXT1 exostosin glycosyltransferase 1 0.00685278
ACTR3 ARP3 actin-related protein 3 homolog (yeast) 0.00684816
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 0.00669017
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.0066512
BRD2 bromodomain containing 2 0.00660252
EEF2 eukaryotic translation elongation factor 2 0.00658987
MAML3 mastermind-like 3 (Drosophila) 0.00648717
LMNA lamin A/C 0.00647135
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.00635483
CACNG8 calcium channel, voltage-dependent, gamma subunit 8 0.00634748
YARS1 tyrosyl-tRNA synthetase 1 0.00633658
PLAU plasminogen activator, urokinase 0.00619824
PTPN14 protein tyrosine phosphatase, non-receptor type 14 0.00618854
RAB7A RAB7A, member RAS oncogene family 0.00608143
FOSL1 FOS-like antigen 1 0.00606849
DOCK1 dedicator of cytokinesis 1 0.0060415
RBM3 RNA binding motif (RNP1, RRM) protein 3 0.00603439
UBAP2 ubiquitin associated protein 2 0.0059493
PKM pyruvate kinase, muscle 0.00593144
RASAL2 RAS protein activator like 2 0.00591783
MED29 mediator complex subunit 29 0.005831
BRD4 bromodomain containing 4 0.00580796
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.00580117
WNK1 WNK lysine deficient protein kinase 1 0.00576478

decreased expression

Symbol Name Standardized Value
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0326337
TXNRD1 thioredoxin reductase 1 -0.0240785
ANXA2 annexin A2 -0.0229089
SMAD3 SMAD family member 3 -0.0227512
NAP1L1 nucleosome assembly protein 1-like 1 -0.0206546
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0204883
ZNF292 zinc finger protein 292 -0.0197187
OGA O-GlcNAcase -0.016329
CD44 CD44 molecule (Indian blood group) -0.0157131
MYOF myoferlin -0.0153987
BIRC6 baculoviral IAP repeat containing 6 -0.015144
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0148862
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.014338
SPAG9 sperm associated antigen 9 -0.013007
TMEM123 transmembrane protein 123 -0.0129729
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B -0.0126378
RPS12 ribosomal protein S12 -0.011916
CANX calnexin -0.0119006
GCNT2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) -0.0118775
RPLP2 ribosomal protein, large, P2 -0.0116042
RPLP1 ribosomal protein, large, P1 -0.0109423
KDM3A lysine (K)-specific demethylase 3A -0.0106787
DHX32 DEAH (Asp-Glu-Ala-His) box polypeptide 32 -0.0105411
MARCHF6 membrane associated ring-CH-type finger 6 -0.0104325
SEC63 SEC63 homolog (S. cerevisiae) -0.0103593
SPATS2L spermatogenesis associated, serine-rich 2-like -0.010322
ARRDC3 arrestin domain containing 3 -0.0102354
NAMPT nicotinamide phosphoribosyltransferase -0.0102272
JMJD1C jumonji domain containing 1C -0.0102212
RPL38 ribosomal protein L38 -0.0101436
ARHGEF12 Rho guanine nucleotide exchange factor (GEF) 12 -0.00997307
PGK1 phosphoglycerate kinase 1 -0.00996476
RPL37A ribosomal protein L37a -0.00989776
TMEM41B transmembrane protein 41B -0.00987194
FOXO3 forkhead box O3 -0.00975888
RTN4 reticulon 4 -0.00971828
PSMC4 proteasome (prosome, macropain) 26S subunit, ATPase, 4 -0.00960744
PRELID2 PRELI domain containing 2 -0.00946737
RPS16 ribosomal protein S16 -0.00945849
SNX14 sorting nexin 14 -0.00938678
MORF4L2 mortality factor 4 like 2 -0.0093701
BRWD3 bromodomain and WD repeat domain containing 3 -0.0092266
FNDC3B fibronectin type III domain containing 3B -0.00920528
RLF rearranged L-myc fusion -0.00916741
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.00906275
NFE2L2 nuclear factor, erythroid 2-like 2 -0.00905361
GOLGA4 golgin A4 -0.00904826
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.00893321
TNPO1 transportin 1 -0.00886167
RUNX1 runt-related transcription factor 1 -0.00874555
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.00863369
CALU calumenin -0.00842903
S100A10 S100 calcium binding protein A10 -0.00840523
AP2B1 adaptor-related protein complex 2, beta 1 subunit -0.008361
RBM39 RNA binding motif protein 39 -0.0082807
RPL28 ribosomal protein L28 -0.00818946
SUCO SUN domain containing ossification factor -0.00809844
MAP3K2 mitogen-activated protein kinase kinase kinase 2 -0.00801724
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta -0.00795299
MBNL2 muscleblind-like splicing regulator 2 -0.00794744
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.00781813
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.00764985
AFDN afadin, adherens junction formation factor -0.00748795
ZCCHC7 zinc finger, CCHC domain containing 7 -0.00746071
WDR45B WD repeat domain 45B -0.0073129
SBF2 SET binding factor 2 -0.00728074
TSC22D2 TSC22 domain family, member 2 -0.00725768
BIRC2 baculoviral IAP repeat containing 2 -0.00717807
RB1CC1 RB1-inducible coiled-coil 1 -0.00705361
USP3 ubiquitin specific peptidase 3 -0.00696513
RPS27A ribosomal protein S27a -0.00693621
CD109 CD109 molecule -0.0069323
TPT1 tumor protein, translationally-controlled 1 -0.00690539
PJA2 praja ring finger 2, E3 ubiquitin protein ligase -0.00690535
YEATS2 YEATS domain containing 2 -0.00684007
PNISR PNN-interacting serine/arginine-rich protein -0.0068246
ANKIB1 ankyrin repeat and IBR domain containing 1 -0.00678851
MATR3 matrin 3 -0.00678194
HM13 histocompatibility (minor) 13 -0.00676467
KLF6 Kruppel-like factor 6 -0.00671279
KMT2C lysine (K)-specific methyltransferase 2C -0.00669694
RPS3 ribosomal protein S3 -0.00665177
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.00663435
ANKRD28 ankyrin repeat domain 28 -0.0066157
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha -0.00654994
CAVIN1 caveolae associated protein 1 -0.0065461
CMSS1 cms1 ribosomal small subunit homolog (yeast) -0.00647181
ANLN anillin, actin binding protein -0.00644478
MARCHF7 membrane associated ring-CH-type finger 7 -0.0063961
SHTN1 shootin 1 -0.00636567
ZFR zinc finger RNA binding protein -0.00629348
WSB1 WD repeat and SOCS box containing 1 -0.00623751
MARF1 meiosis regulator and mRNA stability factor 1 -0.0062355
COG5 component of oligomeric golgi complex 5 -0.00617366
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.00615138
SEC31A SEC31 homolog A (S. cerevisiae) -0.0061465
TAS2R14 taste receptor, type 2, member 14 -0.00614635
TRPM7 transient receptor potential cation channel, subfamily M, member 7 -0.00613265
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.00609639
ATP13A3 ATPase type 13A3 -0.00609583