Mitoxantrone (dihydrochloride)_RKO Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Mitoxantrone (dihydrochloride) perturbation in RKO cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Mitoxantrone (dihydrochloride)_RKO drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
NAV3 neuron navigator 3 0.209167
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.162533
DLC1 DLC1 Rho GTPase activating protein 0.161228
HDAC9 histone deacetylase 9 0.160599
FRMD6 FERM domain containing 6 0.157841
ZNF438 zinc finger protein 438 0.149138
PBX3 pre-B-cell leukemia homeobox 3 0.098904
FRMD4A FERM domain containing 4A 0.0969483
ARHGAP22 Rho GTPase activating protein 22 0.0813432
JMJD1C jumonji domain containing 1C 0.0746958
EXT1 exostosin glycosyltransferase 1 0.0673928
SAMD4A sterile alpha motif domain containing 4A 0.0672515
NABP1 nucleic acid binding protein 1 0.0669265
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0628584
INTS6 integrator complex subunit 6 0.0620882
MAPKAP1 mitogen-activated protein kinase associated protein 1 0.0568649
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.056592
ZEB1 zinc finger E-box binding homeobox 1 0.0551244
HMGA2 high mobility group AT-hook 2 0.0538962
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0525011
DGKI diacylglycerol kinase, iota 0.0501588
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.049535
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.0494982
EEF2 eukaryotic translation elongation factor 2 0.048998
RAD51B RAD51 paralog B 0.0472357
ELL2 elongation factor, RNA polymerase II, 2 0.0471265
NAV2 neuron navigator 2 0.0457598
BNC2 basonuclin 2 0.0456535
ZSWIM6 zinc finger, SWIM-type containing 6 0.0447556
LPP LIM domain containing preferred translocation partner in lipoma 0.0446148
PHC2 polyhomeotic homolog 2 (Drosophila) 0.0441247
ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 0.0416149
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0404876
ERC1 ELKS/RAB6-interacting/CAST family member 1 0.0391194
ARHGEF28 Rho guanine nucleotide exchange factor (GEF) 28 0.0387439
SGMS2 sphingomyelin synthase 2 0.0382068
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0382007
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.036722
MCTP1 multiple C2 domains, transmembrane 1 0.0363359
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.0353252
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.0345691
RCOR1 REST corepressor 1 0.0343244
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 0.0341556
IQCJ-SCHIP1 IQCJ-SCHIP1 readthrough 0.033403
SETX senataxin 0.0324153
FNIP1 folliculin interacting protein 1 0.0318107
RPL4 ribosomal protein L4 0.0313414
EXOC4 exocyst complex component 4 0.0310913
FNDC3B fibronectin type III domain containing 3B 0.0309941
SRRM2 serine/arginine repetitive matrix 2 0.0308731
PTPRG protein tyrosine phosphatase, receptor type, G 0.0308046
AGO2 argonaute RISC catalytic component 2 0.0301961
TAS2R14 taste receptor, type 2, member 14 0.0298847
RAB7A RAB7A, member RAS oncogene family 0.0297165
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0295357
GPATCH2L G patch domain containing 2-like 0.0292224
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 0.0288072
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0285084
TPM4 tropomyosin 4 0.0281506
PCNX4 pecanex 4 0.0279551
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 0.0270629
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.0268237
ZCCHC7 zinc finger, CCHC domain containing 7 0.0263781
AKAP13 A kinase (PRKA) anchor protein 13 0.0263731
CUX1 cut-like homeobox 1 0.0261072
TENM3 teneurin transmembrane protein 3 0.0253318
EFNB2 ephrin-B2 0.0250267
ALCAM activated leukocyte cell adhesion molecule 0.0248264
VEPH1 ventricular zone expressed PH domain-containing 1 0.0247972
VMP1 vacuole membrane protein 1 0.0240368
AK1 adenylate kinase 1 0.0236775
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.023591
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0233438
SQSTM1 sequestosome 1 0.0231404
RFX3 regulatory factor X, 3 (influences HLA class II expression) 0.0227313
STAU2 staufen double-stranded RNA binding protein 2 0.0224936
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) 0.0224866
IARS1 isoleucyl-tRNA synthetase 1 0.0224504
SND1 staphylococcal nuclease and tudor domain containing 1 0.0224465
SEC31A SEC31 homolog A (S. cerevisiae) 0.0222889
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0221385
CARD16 caspase recruitment domain family, member 16 0.0220347
FHIT fragile histidine triad 0.0220238
CTBP2 C-terminal binding protein 2 0.0217765
OSBPL8 oxysterol binding protein-like 8 0.0215614
CMSS1 cms1 ribosomal small subunit homolog (yeast) 0.0212866
CCDC91 coiled-coil domain containing 91 0.0212349
CUTC cutC copper transporter 0.0212132
CORO1C coronin, actin binding protein, 1C 0.0211851
EFL1 elongation factor like GTPase 1 0.0211847
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) 0.0211356
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 0.021004
ANTXR2 anthrax toxin receptor 2 0.0209748
ANKRD17 ankyrin repeat domain 17 0.0209298
ERBIN erbb2 interacting protein 0.0207097
ANO6 anoctamin 6 0.0206809
CFAP299 cilia and flagella associated protein 299 0.0206431
RPL13A ribosomal protein L13a 0.0205827
CSTF3 cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa 0.0204369
PHF3 PHD finger protein 3 0.0203335

decreased expression

Symbol Name Standardized Value
ACTG1 actin gamma 1 -0.0981774
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0957771
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0729169
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0651044
MT2A metallothionein 2A -0.0539761
TPT1 tumor protein, translationally-controlled 1 -0.0463855
RPS19 ribosomal protein S19 -0.044595
RPS21 ribosomal protein S21 -0.0441348
B2M beta-2-microglobulin -0.0440659
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0436646
RPS2 ribosomal protein S2 -0.0433676
POTEF POTE ankyrin domain family, member F -0.042859
STC1 stanniocalcin 1 -0.0426604
RPLP0 ribosomal protein, large, P0 -0.0398257
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0396219
RAD21 RAD21 homolog (S. pombe) -0.0392336
RBM39 RNA binding motif protein 39 -0.0387592
TNFRSF10D tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain -0.0381415
UBA6 ubiquitin-like modifier activating enzyme 6 -0.0370671
WSB1 WD repeat and SOCS box containing 1 -0.0370016
RPL7 ribosomal protein L7 -0.0368529
RPS6 ribosomal protein S6 -0.0362366
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0344404
RPL34 ribosomal protein L34 -0.0339651
S100A9 S100 calcium binding protein A9 -0.0327406
HLA-C major histocompatibility complex, class I, C -0.0315718
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0314068
TIMP1 TIMP metallopeptidase inhibitor 1 -0.030699
RPL26 ribosomal protein L26 -0.0299906
XPO1 exportin 1 -0.0296688
RPL12 ribosomal protein L12 -0.0294396
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0287812
RLF rearranged L-myc fusion -0.0284921
S100A6 S100 calcium binding protein A6 -0.0284685
RRM2B ribonucleotide reductase M2 B (TP53 inducible) -0.0283395
KDM3A lysine (K)-specific demethylase 3A -0.0279802
ARHGAP21 Rho GTPase activating protein 21 -0.0273342
LOC112694756 uncharaterized LOC112694756 -0.0264899
NDRG1 N-myc downstream regulated 1 -0.0262795
CDK17 cyclin-dependent kinase 17 -0.0260665
HLA-B major histocompatibility complex, class I, B -0.0259969
PTMA prothymosin, alpha -0.0256422
RPL30 ribosomal protein L30 -0.0254396
PRRC2C proline-rich coiled-coil 2C -0.0253829
PFN1 profilin 1 -0.0252668
S100A2 S100 calcium binding protein A2 -0.0251613
RPLP1 ribosomal protein, large, P1 -0.0251505
CD68 CD68 molecule -0.0250468
WDR43 WD repeat domain 43 -0.0249054
UBC ubiquitin C -0.0246649
XPC xeroderma pigmentosum, complementation group C -0.0245358
RPS24 ribosomal protein S24 -0.0244572
ACTR3 ARP3 actin-related protein 3 homolog (yeast) -0.0241347
MATR3 matrin 3 -0.0241024
OGA O-GlcNAcase -0.0240711
RPS4X ribosomal protein S4, X-linked -0.0240078
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0238126
CCND2 cyclin D2 -0.0237613
RPL17-C18ORF32 RPL17-C18orf32 readthrough -0.0233101
RPL18 ribosomal protein L18 -0.0233081
G0S2 G0/G1 switch 2 -0.023152
RAB6A RAB6A, member RAS oncogene family -0.022884
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta -0.0228184
FTL ferritin, light polypeptide -0.022694
RPL23 ribosomal protein L23 -0.0224325
ZFP36L1 ZFP36 ring finger protein-like 1 -0.0223782
PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) -0.0220732
NUP54 nucleoporin 54kDa -0.0219919
RPL9 ribosomal protein L9 -0.0219572
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 -0.0218463
RNF24 ring finger protein 24 -0.0217664
ZNF37A zinc finger protein 37A -0.021695
RPS5 ribosomal protein S5 -0.0215045
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0214671
PABPN1 poly(A) binding protein, nuclear 1 -0.0211942
RPL8 ribosomal protein L8 -0.0211738
CELF1 CUGBP, Elav-like family member 1 -0.0208467
ADAM17 ADAM metallopeptidase domain 17 -0.0205533
TRAM1 translocation associated membrane protein 1 -0.020486
CSNK1E casein kinase 1, epsilon -0.0203823
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0203227
BCL2L1 BCL2-like 1 -0.0201605
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric -0.0200745
DSG2 desmoglein 2 -0.0200592
S100A10 S100 calcium binding protein A10 -0.0198691
NAMPT nicotinamide phosphoribosyltransferase -0.0198107
KDSR 3-ketodihydrosphingosine reductase -0.0198083
NEMF nuclear export mediator factor -0.0197959
CAPN2 calpain 2, (m/II) large subunit -0.0197753
NUP58 nucleoporin 58 -0.0197549
KAT6A K(lysine) acetyltransferase 6A -0.0197544
MX1 MX dynamin-like GTPase 1 -0.0197185
UBE2D2 ubiquitin-conjugating enzyme E2D 2 -0.0196218
RPL36 ribosomal protein L36 -0.0196056
FOSL1 FOS-like antigen 1 -0.0195365
ADAR adenosine deaminase, RNA-specific -0.01935
HSPA4L heat shock 70kDa protein 4-like -0.0193253
BBX bobby sox homolog (Drosophila) -0.0191667
MIER1 mesoderm induction early response 1, transcriptional regulator -0.0188893
RPL32 ribosomal protein L32 -0.0185533