NB1 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description A immortal human adrenal gland-derived cell line cell that has the characteristics: Human cell line derived from neuroblastoma. Dibuty-cAMP (1 mM) induces differentiation. TKG0486(Deposited from Tohoku Univ.). (Cell Line Ontology, CLO_0051419)
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Genes

56 genes with high or low copy number in NB1 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
ALK anaplastic lymphoma receptor tyrosine kinase 2.93899
CLIP4 CAP-GLY domain containing linker protein family, member 4 2.93899
BRE-AS1 BRE antisense RNA 1 2.76305
LBH limb bud and heart development 2.76305
IFT172 intraflagellar transport 172 2.76305
GCKR glucokinase (hexokinase 4) regulator 2.76305
BRE brain and reproductive organ-expressed (TNFRSF1A modulator) 2.76305
LCLAT1 lysocardiolipin acyltransferase 1 2.76305
EIF2B4 eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa 2.76305
YPEL5 yippee-like 5 (Drosophila) 2.76305
GTF3C2 general transcription factor IIIC, polypeptide 2, beta 110kDa 2.76305
FTH1P3 ferritin, heavy polypeptide 1 pseudogene 3 2.76305
CCDC121 coiled-coil domain containing 121 2.76305
PPM1G protein phosphatase, Mg2+/Mn2+ dependent, 1G 2.76305
SNX17 sorting nexin 17 2.76305
ZNF512 zinc finger protein 512 2.76305
ZNF513 zinc finger protein 513 2.76305
GPN1 GPN-loop GTPase 1 2.76305
MRPL33 mitochondrial ribosomal protein L33 2.76305
KRTCAP3 keratinocyte associated protein 3 2.76305
FNDC4 fibronectin type III domain containing 4 2.76305
SLC4A1AP solute carrier family 4 (anion exchanger), member 1, adaptor protein 2.76305
C2ORF16 chromosome 2 open reading frame 16 2.76305
RBKS ribokinase 2.76305
NRBP1 nuclear receptor binding protein 1 2.76305
SUPT7L suppressor of Ty 7 (S. cerevisiae)-like 2.76305
GDF7 growth differentiation factor 7 2.64759
HS1BP3 HCLS1 binding protein 3 2.59653
MYCN v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog 2.18124
MYCNOS MYCN opposite strand 2.18124
DENND1B DENN/MADD domain containing 1B 2.12703
LOC440704 uncharacterized LOC440704 2.12703
CFHR1 complement factor H-related 1 2.12607
CFHR3 complement factor H-related 3 2.12607
ZBTB41 zinc finger and BTB domain containing 41 2.12225
CRB1 crumbs family member 1, photoreceptor morphogenesis associated 2.12225
CFHR4 complement factor H-related 4 2.11344
F13B coagulation factor XIII, B polypeptide 2.10992
CFHR2 complement factor H-related 2 2.10992
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 2.10992
MIR4735 microRNA 4735 2.10992
CFHR5 complement factor H-related 5 2.10992
CFH complement factor H 2.10038
KCNT2 potassium channel, sodium activated subfamily T, member 2 2.09529

low copy number

Symbol Name Standardized Value
UBE4B ubiquitination factor E4B -3.24687
PGD phosphogluconate dehydrogenase -3.24687
APITD1 apoptosis-inducing, TAF9-like domain 1 -3.24687
APITD1-CORT APITD1-CORT readthrough -3.24687
CORT cortistatin -3.24687
KIF1B kinesin family member 1B -3.24687
DFFA DNA fragmentation factor, 45kDa, alpha polypeptide -3.24687
PIEZO2 piezo-type mechanosensitive ion channel component 2 -3.15179
PEX14 peroxisomal biogenesis factor 14 -3.11641
ACOT1 acyl-CoA thioesterase 1 -2.89373
RBFOX1 RNA binding protein, fox-1 homolog (C. elegans) 1 -2.84635
DIAPH2 diaphanous-related formin 2 -2.82214