NCI-SNU-16 Gene Set
Genes
54 genes with high or low copy number in NCI-SNU-16 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
high copy number
| Symbol |
Name |
Standardized Value |
|
WDR11-AS1
|
WDR11 antisense RNA 1
|
4.51153
|
|
WDR11
|
WD repeat domain 11
|
4.51153
|
|
MIR5694
|
microRNA 5694
|
4.51153
|
|
ATE1
|
arginyltransferase 1
|
3.12177
|
|
PPAPDC1A
|
phosphatidic acid phosphatase type 2 domain containing 1A
|
3.12177
|
|
C11ORF74
|
chromosome 11 open reading frame 74
|
2.59653
|
|
RAG2
|
recombination activating gene 2
|
2.59653
|
|
FGFR2
|
fibroblast growth factor receptor 2
|
2.59653
|
|
TRAF6
|
TNF receptor-associated factor 6, E3 ubiquitin protein ligase
|
2.59653
|
|
RAG1
|
recombination activating gene 1
|
2.59653
|
|
PAMR1
|
peptidase domain containing associated with muscle regeneration 1
|
2.49065
|
|
FJX1
|
four jointed box 1 (Drosophila)
|
2.49065
|
|
TRIM44
|
tripartite motif containing 44
|
2.49065
|
|
MIR3973
|
microRNA 3973
|
2.49065
|
|
MIR1343
|
microRNA 1343
|
2.44392
|
|
APIP
|
APAF1 interacting protein
|
2.44392
|
|
SLC1A2
|
solute carrier family 1 (glial high affinity glutamate transporter), member 2
|
2.44392
|
|
PDHX
|
pyruvate dehydrogenase complex, component X
|
2.44392
|
|
CD44
|
CD44 molecule (Indian blood group)
|
2.39327
|
|
FAM84B
|
family with sequence similarity 84, member B
|
2.15847
|
|
LOC100507205
|
uncharacterized LOC100507205
|
2.12225
|
|
LRRC4C
|
leucine rich repeat containing 4C
|
2.09431
|
|
COMMD9
|
COMM domain containing 9
|
2.09431
|
|
PRR5L
|
proline rich 5 like
|
2.09431
|
|
LDLRAD3
|
low density lipoprotein receptor class A domain containing 3
|
2.09073
|
|
MIR1206
|
microRNA 1206
|
2.07612
|
|
MIR1207
|
microRNA 1207
|
2.07136
|
|
MIR1205
|
microRNA 1205
|
2.07136
|
|
MIR1208
|
microRNA 1208
|
2.07136
|
|
TMEM75
|
transmembrane protein 75
|
2.06401
|
|
POU5F1B
|
POU class 5 homeobox 1B
|
2.05836
|
|
MIR1204
|
microRNA 1204
|
2.04661
|
|
PVT1
|
Pvt1 oncogene (non-protein coding)
|
2.04585
|
low copy number
| Symbol |
Name |
Standardized Value |
|
FOCAD
|
focadhesin
|
-2.7828
|
|
HACD4
|
3-hydroxyacyl-CoA dehydratase 4
|
-2.78237
|
|
IFNB1
|
interferon, beta 1, fibroblast
|
-2.77588
|
|
IFNW1
|
interferon, omega 1
|
-2.77446
|
|
IFNA21
|
interferon, alpha 21
|
-2.77074
|
|
IFNA4
|
interferon, alpha 4
|
-2.7694
|
|
IFNA17
|
interferon, alpha 17
|
-2.76453
|
|
IFNA16
|
interferon, alpha 16
|
-2.76453
|
|
IFNA10
|
interferon, alpha 10
|
-2.75972
|
|
IFNA7
|
interferon, alpha 7
|
-2.75972
|
|
IFNA14
|
interferon, alpha 14
|
-2.75972
|
|
IFNA22P
|
interferon, alpha 22, pseudogene
|
-2.75555
|
|
IFNA5
|
interferon, alpha 5
|
-2.74973
|
|
KLHL9
|
kelch-like family member 9
|
-2.74526
|
|
ELAVL2
|
ELAV like neuron-specific RNA binding protein 2
|
-2.74526
|
|
IFNA6
|
interferon, alpha 6
|
-2.74032
|
|
IFNA13
|
interferon, alpha 13
|
-2.73798
|
|
IFNA2
|
interferon, alpha 2
|
-2.73608
|
|
IFNA8
|
interferon, alpha 8
|
-2.73024
|
|
IFNA1
|
interferon, alpha 1
|
-2.72828
|
|
IFNE
|
interferon, epsilon
|
-2.72466
|
