NG25_A-172 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description NG25 perturbation in A-172 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the NG25_A-172 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
MT2A metallothionein 2A 0.157017
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.11372
TPM3 tropomyosin 3 0.0937114
AKAP12 A kinase (PRKA) anchor protein 12 0.0804232
PCBP2 poly(rC) binding protein 2 0.071614
APP amyloid beta (A4) precursor protein 0.0626155
LDHA lactate dehydrogenase A 0.0622045
MCL1 myeloid cell leukemia 1 0.059308
MYH9 myosin, heavy chain 9, non-muscle 0.0592597
SEPTIN9 septin 9 0.057736
CD44 CD44 molecule (Indian blood group) 0.0575866
CALR calreticulin 0.0567877
NDRG1 N-myc downstream regulated 1 0.0546318
FNDC3B fibronectin type III domain containing 3B 0.0530751
SOX9 SRY (sex determining region Y)-box 9 0.0521961
NFE2L1 nuclear factor, erythroid 2-like 1 0.0515241
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0500286
LOXL2 lysyl oxidase-like 2 0.0489641
EEF2 eukaryotic translation elongation factor 2 0.0487563
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.048251
MSN moesin 0.0481709
COL3A1 collagen, type III, alpha 1 0.0475979
VIM vimentin 0.0468308
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0457399
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.045182
FLNB filamin B, beta 0.0441029
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0438011
EIF1 eukaryotic translation initiation factor 1 0.0436459
STC1 stanniocalcin 1 0.0435729
FLNA filamin A, alpha 0.0414952
B2M beta-2-microglobulin 0.0414522
POTEF POTE ankyrin domain family, member F 0.0413978
HDAC9 histone deacetylase 9 0.0408233
ADM adrenomedullin 0.0400505
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0400013
MYADM myeloid-associated differentiation marker 0.0375664
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0374988
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.0357871
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0355212
PKM pyruvate kinase, muscle 0.0353126
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0336086
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0320766
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0318544
ATP13A3 ATPase type 13A3 0.0318519
TNIP1 TNFAIP3 interacting protein 1 0.0308551
RPL23 ribosomal protein L23 0.0296461
PLEC plectin 0.0293512
ARRDC3 arrestin domain containing 3 0.0291117
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0281688
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0279483
TIMP2 TIMP metallopeptidase inhibitor 2 0.0274878
RPL3 ribosomal protein L3 0.0274596
DDIT4 DNA-damage-inducible transcript 4 0.0273909
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0271665
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.0270254
PTMA prothymosin, alpha 0.0270081
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0269892
SMAD3 SMAD family member 3 0.0267791
SON SON DNA binding protein 0.026731
EZR ezrin 0.0264741
ENO1 enolase 1, (alpha) 0.0262895
C1D C1D nuclear receptor corepressor 0.0259344
SQSTM1 sequestosome 1 0.0244033
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0238504
YBX1 Y box binding protein 1 0.023475
ZMIZ1 zinc finger, MIZ-type containing 1 0.0234147
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0232048
ADAR adenosine deaminase, RNA-specific 0.0231294
GPC6 glypican 6 0.0224025
TAC4 tachykinin 4 (hemokinin) 0.0223887
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0223846
APLP2 amyloid beta (A4) precursor-like protein 2 0.0222976
RPS18 ribosomal protein S18 0.0221494
DLGAP4 discs, large (Drosophila) homolog-associated protein 4 0.0219047
YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta 0.0217845
ANXA5 annexin A5 0.0216786
UBC ubiquitin C 0.0214872
GARS1 glycyl-tRNA synthetase 1 0.0212961
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 0.0212683
KLF7 Kruppel-like factor 7 (ubiquitous) 0.0211528
FTH1 ferritin, heavy polypeptide 1 0.0210371
HLA-A major histocompatibility complex, class I, A 0.0209176
PLAUR plasminogen activator, urokinase receptor 0.0207429
LOC102724023 ES1 protein homolog, mitochondrial 0.0205825
KLF6 Kruppel-like factor 6 0.0205196
PDIA6 protein disulfide isomerase family A, member 6 0.0197458
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0197413
PPP1R18 protein phosphatase 1, regulatory subunit 18 0.0196756
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0195496
NAP1L1 nucleosome assembly protein 1-like 1 0.019546
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0194784
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.0194377
EGR1 early growth response 1 0.0192052
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.0191792
RSRC2 arginine/serine-rich coiled-coil 2 0.0191567
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) 0.0190721
FOSL1 FOS-like antigen 1 0.0190573
MNT MAX network transcriptional repressor 0.0189481
SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase 0.0187848
SET SET nuclear proto-oncogene 0.0187366

decreased expression

Symbol Name Standardized Value
IGFBP3 insulin-like growth factor binding protein 3 -0.242416
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.20589
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.187331
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.144237
AHNAK AHNAK nucleoprotein -0.13311
FN1 fibronectin 1 -0.117052
ABI3BP ABI family, member 3 (NESH) binding protein -0.107451
LOX lysyl oxidase -0.0936624
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0907417
COL8A1 collagen, type VIII, alpha 1 -0.088579
CDH13 cadherin 13 -0.0722395
HSPB1 heat shock 27kDa protein 1 -0.0712151
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0640993
TMSB10 thymosin beta 10 -0.0631231
SUCNR1 succinate receptor 1 -0.0628429
CACNA2D3 calcium channel, voltage-dependent, alpha 2/delta subunit 3 -0.061632
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A -0.05534
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 -0.0532202
DLG1 discs, large homolog 1 (Drosophila) -0.0510356
SAMD9 sterile alpha motif domain containing 9 -0.05047
COL5A1 collagen, type V, alpha 1 -0.0504124
CENPF centromere protein F, 350/400kDa -0.0488838
TENM3 teneurin transmembrane protein 3 -0.0486757
SORBS2 sorbin and SH3 domain containing 2 -0.0482112
EGFR epidermal growth factor receptor -0.0477257
SLC39A11 solute carrier family 39, member 11 -0.0463828
CAVIN1 caveolae associated protein 1 -0.0442208
CANX calnexin -0.0406289
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0401187
DST dystonin -0.0379568
FSTL1 follistatin-like 1 -0.0378928
S100A10 S100 calcium binding protein A10 -0.0378595
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -0.0376499
RIGI RNA sensor RIG-I -0.0372583
ZMYND8 zinc finger, MYND-type containing 8 -0.0372393
P4HA2 prolyl 4-hydroxylase, alpha polypeptide II -0.0369629
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0367916
TRIO trio Rho guanine nucleotide exchange factor -0.0360841
LRRC17 leucine rich repeat containing 17 -0.0359903
HLA-B major histocompatibility complex, class I, B -0.0358534
LIMCH1 LIM and calponin homology domains 1 -0.035439
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0353061
CDK6 cyclin-dependent kinase 6 -0.035195
CDC42EP3 CDC42 effector protein (Rho GTPase binding) 3 -0.0349598
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 -0.0344433
PRSS23 protease, serine, 23 -0.0342613
THBS2 thrombospondin 2 -0.032639
ANKIB1 ankyrin repeat and IBR domain containing 1 -0.0325997
DCLK2 doublecortin-like kinase 2 -0.0322306
MYOF myoferlin -0.0322191
COL5A2 collagen, type V, alpha 2 -0.0322136
ACTG1 actin gamma 1 -0.0322
AFF4 AF4/FMR2 family, member 4 -0.0320467
RAB1A RAB1A, member RAS oncogene family -0.0320155
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0312737
S100A4 S100 calcium binding protein A4 -0.0311878
HSPH1 heat shock 105kDa/110kDa protein 1 -0.031028
TPT1 tumor protein, translationally-controlled 1 -0.0309681
PDE4D phosphodiesterase 4D, cAMP-specific -0.0304608
INSIG1 insulin induced gene 1 -0.0303255
ZBTB20 zinc finger and BTB domain containing 20 -0.0296982
IFI16 interferon, gamma-inducible protein 16 -0.0290974
IL7R interleukin 7 receptor -0.0285085
TPM1 tropomyosin 1 (alpha) -0.027902
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0274938
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0273835
MEIS2 Meis homeobox 2 -0.0268196
PDIA3 protein disulfide isomerase family A, member 3 -0.0267947
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.0267708
NAV1 neuron navigator 1 -0.0267121
FRMD4A FERM domain containing 4A -0.0266989
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 -0.0266189
RPS24 ribosomal protein S24 -0.0258057
FLT1 fms-related tyrosine kinase 1 -0.0256551
FNDC3A fibronectin type III domain containing 3A -0.0256002
HS3ST3A1 heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 -0.0255697
TTC3 tetratricopeptide repeat domain 3 -0.0254652
SLC8A1 solute carrier family 8 (sodium/calcium exchanger), member 1 -0.0254646
MMP12 matrix metallopeptidase 12 -0.0252423
RPS6KA2 ribosomal protein S6 kinase, 90kDa, polypeptide 2 -0.025105
KRT81 keratin 81, type II -0.0249556
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0247279
CYTH3 cytohesin 3 -0.0243135
ANKUB1 ankyrin repeat and ubiquitin domain containing 1 -0.0242541
SH3BP5 SH3-domain binding protein 5 (BTK-associated) -0.023879
FTL ferritin, light polypeptide -0.0238751
MBD5 methyl-CpG binding domain protein 5 -0.0238701
MRPS6 mitochondrial ribosomal protein S6 -0.0235905
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa -0.0235732
NSD3 nuclear receptor binding SET domain protein 3 -0.0235608
TNS3 tensin 3 -0.0233522
SEC31A SEC31 homolog A (S. cerevisiae) -0.0231185
CSTB cystatin B (stefin B) -0.023022
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0230035
ARHGEF10 Rho guanine nucleotide exchange factor (GEF) 10 -0.0227979
SAMD9L sterile alpha motif domain containing 9-like -0.0227848
PRELID2 PRELI domain containing 2 -0.0226842
RPTOR regulatory associated protein of MTOR, complex 1 -0.0226214
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) -0.0224434
KRT18 keratin 18, type I -0.0223749