NG25_HepG2/C3A Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description NG25 perturbation in HepG2/C3A cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the NG25_HepG2/C3A drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 0.27842
IGFBP1 insulin-like growth factor binding protein 1 0.120514
SVIL supervillin 0.102543
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0852721
PDLIM5 PDZ and LIM domain 5 0.081873
SAMD4A sterile alpha motif domain containing 4A 0.0772411
TIMP1 TIMP metallopeptidase inhibitor 1 0.0753831
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0734548
ENO1 enolase 1, (alpha) 0.0701052
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0699277
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0681549
ASPH aspartate beta-hydroxylase 0.0620454
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0596399
FAM107B family with sequence similarity 107, member B 0.0557006
ATXN1 ataxin 1 0.0528896
RPS18 ribosomal protein S18 0.0477581
MT2A metallothionein 2A 0.0476886
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0463898
INTS6 integrator complex subunit 6 0.0440475
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0440195
FAT1 FAT atypical cadherin 1 0.0437101
MCL1 myeloid cell leukemia 1 0.0435905
ERRFI1 ERBB receptor feedback inhibitor 1 0.0431822
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0407566
EEF2 eukaryotic translation elongation factor 2 0.0400744
EXT1 exostosin glycosyltransferase 1 0.0393845
KYNU kynureninase 0.0384771
ERN1 endoplasmic reticulum to nucleus signaling 1 0.0361717
HMGA1 high mobility group AT-hook 1 0.0356044
CCL20 chemokine (C-C motif) ligand 20 0.0355776
MYH9 myosin, heavy chain 9, non-muscle 0.0354543
GMDS GDP-mannose 4,6-dehydratase 0.0353242
RPL3 ribosomal protein L3 0.0352049
DSPP dentin sialophosphoprotein 0.0339051
MACF1 microtubule-actin crosslinking factor 1 0.0310308
POTEF POTE ankyrin domain family, member F 0.0295653
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0284847
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0281557
GRB10 growth factor receptor-bound protein 10 0.0280955
SMAD3 SMAD family member 3 0.0274179
DTNA dystrobrevin, alpha 0.0273476
PCBP2 poly(rC) binding protein 2 0.0266816
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0265684
LPP LIM domain containing preferred translocation partner in lipoma 0.0258596
FRMD5 FERM domain containing 5 0.0257169
SOX9 SRY (sex determining region Y)-box 9 0.0253266
APLP2 amyloid beta (A4) precursor-like protein 2 0.0252515
RPS12 ribosomal protein S12 0.0249906
LARGE1 LARGE xylosyl- and glucuronyltransferase 1 0.0238837
HPCAL1 hippocalcin-like 1 0.0235141
ANKRD1 ankyrin repeat domain 1 (cardiac muscle) 0.023203
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 0.0224421
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0223312
MYO5B myosin VB 0.0214532
CANX calnexin 0.0213828
FERMT2 fermitin family member 2 0.0213174
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0213008
RPS17 ribosomal protein S17 0.0209667
SPATS2L spermatogenesis associated, serine-rich 2-like 0.0208161
TNS1 tensin 1 0.0207014
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.0206855
TPM3 tropomyosin 3 0.0205663
DIAPH1 diaphanous-related formin 1 0.020545
ZSWIM6 zinc finger, SWIM-type containing 6 0.0204561
PLEC plectin 0.020335
UBR4 ubiquitin protein ligase E3 component n-recognin 4 0.0200587
CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 0.0200275
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.019919
STC2 stanniocalcin 2 0.0198475
SLC41A2 solute carrier family 41 (magnesium transporter), member 2 0.0198448
SYNE1 spectrin repeat containing, nuclear envelope 1 0.0197791
PAWR PRKC, apoptosis, WT1, regulator 0.0197565
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0197388
ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 0.0196461
ITGA6 integrin, alpha 6 0.0195628
RPS7 ribosomal protein S7 0.0195052
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 0.0194778
LIMS1 LIM and senescent cell antigen-like domains 1 0.0192643
TLE4 transducin-like enhancer of split 4 0.0191503
KRT8 keratin 8, type II 0.019093
MYO1E myosin IE 0.0190858
PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 0.0190388
RAD51B RAD51 paralog B 0.0188395
ADARB1 adenosine deaminase, RNA-specific, B1 0.0187501
HM13 histocompatibility (minor) 13 0.0186756
PLIN2 perilipin 2 0.0186079
NFE2L1 nuclear factor, erythroid 2-like 1 0.0185345
MBNL2 muscleblind-like splicing regulator 2 0.0184424
HIVEP1 human immunodeficiency virus type I enhancer binding protein 1 0.0182572
PGM3 phosphoglucomutase 3 0.0181456
DUSP16 dual specificity phosphatase 16 0.0180904
PPARD peroxisome proliferator-activated receptor delta 0.0179284
RASA2 RAS p21 protein activator 2 0.0178509
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0178395
MTSS1 metastasis suppressor 1 0.0176859
RAI14 retinoic acid induced 14 0.0175847
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0175161
ZBTB38 zinc finger and BTB domain containing 38 0.017403
SQSTM1 sequestosome 1 0.0173601
ACSL5 acyl-CoA synthetase long-chain family member 5 0.0171419

decreased expression

Symbol Name Standardized Value
IGF2 insulin-like growth factor 2 -0.33249
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.195136
APOB apolipoprotein B -0.164848
APOA2 apolipoprotein A-II -0.132056
EML4 echinoderm microtubule associated protein like 4 -0.091183
TPT1 tumor protein, translationally-controlled 1 -0.0888449
FBF1 Fas (TNFRSF6) binding factor 1 -0.0860095
ACSL4 acyl-CoA synthetase long-chain family member 4 -0.0785191
ELL2 elongation factor, RNA polymerase II, 2 -0.0759078
FN1 fibronectin 1 -0.0720658
GPC3 glypican 3 -0.0720156
TM4SF1 transmembrane 4 L six family member 1 -0.067229
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 -0.0667047
VPS54 vacuolar protein sorting 54 homolog (S. cerevisiae) -0.0652
TRIM26 tripartite motif containing 26 -0.0650887
PTPRM protein tyrosine phosphatase, receptor type, M -0.0622218
TMEM123 transmembrane protein 123 -0.059729
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0590008
A2M alpha-2-macroglobulin -0.058752
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0565805
SLC38A2 solute carrier family 38, member 2 -0.0563444
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.054315
FTL ferritin, light polypeptide -0.0500823
PEG10 paternally expressed 10 -0.0497037
RBM39 RNA binding motif protein 39 -0.048875
PTBP3 polypyrimidine tract binding protein 3 -0.0475387
ZMYND8 zinc finger, MYND-type containing 8 -0.0452872
LYZ lysozyme -0.0431828
JMJD1C jumonji domain containing 1C -0.0411691
LRMDA leucine rich melanocyte differentiation associated -0.0407593
RPS6 ribosomal protein S6 -0.0405615
CAMK2N1 calcium/calmodulin-dependent protein kinase II inhibitor 1 -0.0404033
GPAM glycerol-3-phosphate acyltransferase, mitochondrial -0.039746
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 -0.0393477
PEG3 paternally expressed 3 -0.0392324
MAML2 mastermind-like 2 (Drosophila) -0.0385776
UBE2D2 ubiquitin-conjugating enzyme E2D 2 -0.0383555
CP ceruloplasmin (ferroxidase) -0.0382931
SOS1 son of sevenless homolog 1 (Drosophila) -0.0378588
RBM25 RNA binding motif protein 25 -0.0359948
MTUS1 microtubule associated tumor suppressor 1 -0.0358723
RPS24 ribosomal protein S24 -0.0355454
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.03523
FNDC3B fibronectin type III domain containing 3B -0.0351274
STAU1 staufen double-stranded RNA binding protein 1 -0.0351145
NKD1 naked cuticle homolog 1 (Drosophila) -0.0327387
SELENOP selenoprotein P -0.0327333
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 -0.0327049
PTTG1IP pituitary tumor-transforming 1 interacting protein -0.0320502
PDGFB platelet-derived growth factor beta polypeptide -0.0320171
RPL11 ribosomal protein L11 -0.0317241
RPLP0 ribosomal protein, large, P0 -0.0316084
APOH apolipoprotein H (beta-2-glycoprotein I) -0.0313801
ITIH2 inter-alpha-trypsin inhibitor heavy chain 2 -0.0313222
APOE apolipoprotein E -0.0311909
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 -0.0309945
RPL35A ribosomal protein L35a -0.030966
SLC6A14 solute carrier family 6 (amino acid transporter), member 14 -0.0308543
PHYHIPL phytanoyl-CoA 2-hydroxylase interacting protein-like -0.0307292
MALT1 MALT1 paracaspase -0.030722
PERP PERP, TP53 apoptosis effector -0.0304382
MBNL3 muscleblind-like splicing regulator 3 -0.0292212
DENND4A DENN/MADD domain containing 4A -0.0289205
ARID3A AT rich interactive domain 3A (BRIGHT-like) -0.0288186
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0283951
NIPBL Nipped-B homolog (Drosophila) -0.0283877
PRAG1 PEAK1 related, kinase-activating pseudokinase 1 -0.0283265
ADGRG6 adhesion G protein-coupled receptor G6 -0.0283006
EPS8 epidermal growth factor receptor pathway substrate 8 -0.0280326
NPR2 natriuretic peptide receptor 2 -0.0280253
PHF21A PHD finger protein 21A -0.0277527
MAN1A1 mannosidase, alpha, class 1A, member 1 -0.0277119
ITGA1 integrin, alpha 1 -0.0276085
SCN9A sodium channel, voltage gated, type IX alpha subunit -0.0275944
CFB complement factor B -0.0274151
RRBP1 ribosome binding protein 1 -0.0272287
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0271281
PRRC2C proline-rich coiled-coil 2C -0.027105
SESTD1 SEC14 and spectrin domains 1 -0.0271018
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) -0.027066
H1-0 H1.0 linker histone -0.026982
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) -0.0269091
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0268118
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) -0.026674
ROCK2 Rho-associated, coiled-coil containing protein kinase 2 -0.0265997
PTCHD4 patched domain containing 4 -0.0262682
RPS21 ribosomal protein S21 -0.0252754
DOCK4 dedicator of cytokinesis 4 -0.0251171
PPP2R5E protein phosphatase 2, regulatory subunit B', epsilon isoform -0.0250774
ARHGAP12 Rho GTPase activating protein 12 -0.0243294
GCC2 GRIP and coiled-coil domain containing 2 -0.0242314
PEBP1 phosphatidylethanolamine binding protein 1 -0.0240726
TPST1 tyrosylprotein sulfotransferase 1 -0.023998
VDAC1 voltage-dependent anion channel 1 -0.0238377
NPEPPS aminopeptidase puromycin sensitive -0.0235515
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0234729
MAP3K2 mitogen-activated protein kinase kinase kinase 2 -0.0231142
KIF5B kinesin family member 5B -0.0230366
KPNB1 karyopherin (importin) beta 1 -0.0229076
CST3 cystatin C -0.022824