NG25_SW 900 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description NG25 perturbation in SW 900 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the NG25_SW 900 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
MT2A metallothionein 2A 0.16787
TXNIP thioredoxin interacting protein 0.110036
EXT1 exostosin glycosyltransferase 1 0.0821366
AKAP12 A kinase (PRKA) anchor protein 12 0.0820439
FNDC3B fibronectin type III domain containing 3B 0.0770011
ASPH aspartate beta-hydroxylase 0.074646
TPM3 tropomyosin 3 0.0707655
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0636289
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0603371
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0594672
MCL1 myeloid cell leukemia 1 0.0561475
TMEM156 transmembrane protein 156 0.0552799
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.053557
B2M beta-2-microglobulin 0.0502594
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0491988
MAP1B microtubule-associated protein 1B 0.0457086
SMAD3 SMAD family member 3 0.0437322
DUSP6 dual specificity phosphatase 6 0.0436786
NAMPT nicotinamide phosphoribosyltransferase 0.0432844
HMGA1 high mobility group AT-hook 1 0.0428468
SIK3 SIK family kinase 3 0.0425788
ENO2 enolase 2 (gamma, neuronal) 0.041947
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0418219
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0417808
PCBP2 poly(rC) binding protein 2 0.0412065
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0404789
SOX9 SRY (sex determining region Y)-box 9 0.0402852
EREG epiregulin 0.0400082
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0396329
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0393945
EFNA5 ephrin-A5 0.0384084
ANGPTL4 angiopoietin-like 4 0.0383518
POTEF POTE ankyrin domain family, member F 0.0380988
RPS18 ribosomal protein S18 0.0377803
ZSWIM6 zinc finger, SWIM-type containing 6 0.0373604
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0373483
LMNA lamin A/C 0.0364665
FTH1 ferritin, heavy polypeptide 1 0.036074
PKM pyruvate kinase, muscle 0.0354733
ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 0.0353966
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 0.0352383
CD44 CD44 molecule (Indian blood group) 0.0345667
NDRG1 N-myc downstream regulated 1 0.0345402
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.033807
SVIL supervillin 0.0325577
FOSB FBJ murine osteosarcoma viral oncogene homolog B 0.031588
TOP1 topoisomerase (DNA) I 0.030921
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0304907
NTN4 netrin 4 0.0302987
DOCK5 dedicator of cytokinesis 5 0.0302414
CAMK1D calcium/calmodulin-dependent protein kinase ID 0.0302239
EZR ezrin 0.0295079
LOC102724023 ES1 protein homolog, mitochondrial 0.0293406
LOXL2 lysyl oxidase-like 2 0.0289422
AFDN afadin, adherens junction formation factor 0.0288448
VIM vimentin 0.0285351
EMP1 epithelial membrane protein 1 0.0284156
HIPK2 homeodomain interacting protein kinase 2 0.0273562
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0269468
GPATCH2L G patch domain containing 2-like 0.0265392
MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2 0.0258883
SEPTIN9 septin 9 0.025808
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.0257588
MYH9 myosin, heavy chain 9, non-muscle 0.025688
PLAUR plasminogen activator, urokinase receptor 0.0253489
PTK2 protein tyrosine kinase 2 0.0252448
ANXA5 annexin A5 0.0252086
BIRC3 baculoviral IAP repeat containing 3 0.0251953
AKAP13 A kinase (PRKA) anchor protein 13 0.0251446
FOS FBJ murine osteosarcoma viral oncogene homolog 0.0248513
FLNA filamin A, alpha 0.0248119
TGM2 transglutaminase 2 0.0247003
ZFP36L1 ZFP36 ring finger protein-like 1 0.0245674
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0243606
CRY1 cryptochrome circadian clock 1 0.0243495
CALR calreticulin 0.0241689
SON SON DNA binding protein 0.0240101
RPL3 ribosomal protein L3 0.0239587
ADAR adenosine deaminase, RNA-specific 0.0236601
RFFL ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 0.0235963
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0234297
FOSL1 FOS-like antigen 1 0.0233953
TNIP1 TNFAIP3 interacting protein 1 0.023339
EEF2 eukaryotic translation elongation factor 2 0.0232086
WWTR1 WW domain containing transcription regulator 1 0.0231127
EIF5 eukaryotic translation initiation factor 5 0.0228619
SLTM SAFB-like, transcription modulator 0.0228005
RND3 Rho family GTPase 3 0.0225323
GALNT2 polypeptide N-acetylgalactosaminyltransferase 2 0.022521
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.0224627
SEMA4A sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 0.022372
ZFAND3 zinc finger, AN1-type domain 3 0.0223615
MAP3K5 mitogen-activated protein kinase kinase kinase 5 0.0223126
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0222168
NFE2L1 nuclear factor, erythroid 2-like 1 0.0221351
MYADM myeloid-associated differentiation marker 0.0220177
SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 0.0219995
PLEC plectin 0.0218733
APLP2 amyloid beta (A4) precursor-like protein 2 0.0218568
YBX3 Y box binding protein 3 0.0216569

decreased expression

Symbol Name Standardized Value
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) -0.246196
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.20183
NRG1 neuregulin 1 -0.197322
FN1 fibronectin 1 -0.156774
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.151221
CENPF centromere protein F, 350/400kDa -0.0838886
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.0795854
CANX calnexin -0.072887
PTMA prothymosin, alpha -0.072813
SYT1 synaptotagmin I -0.0690992
ITGA1 integrin, alpha 1 -0.0678506
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0677484
LIMCH1 LIM and calponin homology domains 1 -0.0637724
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0626032
TAS2R14 taste receptor, type 2, member 14 -0.0593098
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0568976
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.0563518
TPT1 tumor protein, translationally-controlled 1 -0.0536818
PALLD palladin, cytoskeletal associated protein -0.0531728
HMGA2 high mobility group AT-hook 2 -0.0519547
H1-0 H1.0 linker histone -0.0490291
CD109 CD109 molecule -0.0488369
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0476661
LRMDA leucine rich melanocyte differentiation associated -0.0419376
KDM3A lysine (K)-specific demethylase 3A -0.0412594
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0404523
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0398785
TMEM165 transmembrane protein 165 -0.0384171
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0370996
HLA-B major histocompatibility complex, class I, B -0.0370388
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0369623
CPEB4 cytoplasmic polyadenylation element binding protein 4 -0.0367739
ANKHD1 ankyrin repeat and KH domain containing 1 -0.0362714
SLC38A2 solute carrier family 38, member 2 -0.0348998
TMEM263 transmembrane protein 263 -0.0344414
LCORL ligand dependent nuclear receptor corepressor-like -0.0337117
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 -0.0335307
AHR aryl hydrocarbon receptor -0.0333307
TMSB4X thymosin beta 4, X-linked -0.0330727
AHNAK AHNAK nucleoprotein -0.032617
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0324811
TM4SF1 transmembrane 4 L six family member 1 -0.0323533
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) -0.032197
PRH1 proline-rich protein HaeIII subfamily 1 -0.0318127
MBD5 methyl-CpG binding domain protein 5 -0.0314537
AEBP2 AE binding protein 2 -0.0311306
WSB1 WD repeat and SOCS box containing 1 -0.0309897
MAML2 mastermind-like 2 (Drosophila) -0.030788
RPL35A ribosomal protein L35a -0.0305724
PLEKHA5 pleckstrin homology domain containing, family A member 5 -0.0305052
BZW1 basic leucine zipper and W2 domains 1 -0.0302768
APOLD1 apolipoprotein L domain containing 1 -0.0299329
MRPS6 mitochondrial ribosomal protein S6 -0.0298523
FNIP1 folliculin interacting protein 1 -0.0297916
SKAP2 src kinase associated phosphoprotein 2 -0.0293657
VCL vinculin -0.0291188
NPEPPS aminopeptidase puromycin sensitive -0.0290887
CTSD cathepsin D -0.0288489
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0288238
ZNF217 zinc finger protein 217 -0.0281854
GPC6 glypican 6 -0.0281406
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0279877
RPLP1 ribosomal protein, large, P1 -0.0273034
RAI14 retinoic acid induced 14 -0.0268909
ZMYND8 zinc finger, MYND-type containing 8 -0.026648
ZNF292 zinc finger protein 292 -0.0265384
TBC1D22A TBC1 domain family, member 22A -0.0262388
RPL26 ribosomal protein L26 -0.0261257
RPL37A ribosomal protein L37a -0.026039
TRIO trio Rho guanine nucleotide exchange factor -0.025449
FTL ferritin, light polypeptide -0.025272
RPL38 ribosomal protein L38 -0.0251724
ERO1B endoplasmic reticulum oxidoreductase 1 beta -0.0251403
EPS8 epidermal growth factor receptor pathway substrate 8 -0.0246639
PCNX4 pecanex 4 -0.0246491
PCDH7 protocadherin 7 -0.0245887
MTDH metadherin -0.0244798
ZBTB20 zinc finger and BTB domain containing 20 -0.0243604
ARF1 ADP-ribosylation factor 1 -0.0241953
TTC3 tetratricopeptide repeat domain 3 -0.0238386
LRRC23 leucine rich repeat containing 23 -0.0237655
PDIA3 protein disulfide isomerase family A, member 3 -0.0236826
MKI67 marker of proliferation Ki-67 -0.0235229
AFF4 AF4/FMR2 family, member 4 -0.0232613
XPO1 exportin 1 -0.0231282
KPNB1 karyopherin (importin) beta 1 -0.0229757
OSBPL3 oxysterol binding protein-like 3 -0.0229657
RPS27A ribosomal protein S27a -0.0228594
AGR2 anterior gradient 2 -0.0228007
RPS24 ribosomal protein S24 -0.0227569
HMGB3 high mobility group box 3 -0.0227491
RSF1 remodeling and spacing factor 1 -0.0225616
IRF2BP2 interferon regulatory factor 2 binding protein 2 -0.0224284
N4BP2L2 NEDD4 binding protein 2-like 2 -0.0223949
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.0223917
ST13 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) -0.0223359
SOX5 SRY (sex determining region Y)-box 5 -0.0223316
TNS3 tensin 3 -0.0217364
BAZ2B bromodomain adjacent to zinc finger domain, 2B -0.0215489
SOX4 SRY (sex determining region Y)-box 4 -0.0215226