NPAS4 Gene Set

Dataset CM4AI KOLF21J CRISPRi Gene Perturbation Atlas
Category transcriptomics
Type gene perturbation
Description neuronal PAS domain protein 4|NXF is a member of the basic helix-loop-helix-PER (MIM 602260)-ARNT (MIM 126110)-SIM (see SIM2; MIM 600892) (bHLH-PAS) class of transcriptional regulators, which are involved in a wide range of physiologic and developmental events (Ooe et al., 2004 [PubMed 14701734]).[supplied by OMIM, Mar 2008] (NCBI Entrez Gene Database, 266743)
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Genes

337 genes differentially expressed following the NPAS4 gene perturbation from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas.

increased expression

Symbol Name Standardized Value
SIX6 SIX homeobox 6 2.48831
PAX6 paired box 6 2.48831
FETUB fetuin B 2.48831
SCNN1G sodium channel, non voltage gated 1 gamma subunit 2.48831
CIITA class II, major histocompatibility complex, transactivator 2.48831
PBOV1 prostate and breast cancer overexpressed 1 2.48831
ALPK2 alpha-kinase 2 2.48831
OR2W3 olfactory receptor, family 2, subfamily W, member 3 2.48831
UNC45B unc-45 homolog B (C. elegans) 2.48831
C11ORF87 chromosome 11 open reading frame 87 2.48831
UCP1 uncoupling protein 1 (mitochondrial, proton carrier) 2.48831
CSH2 chorionic somatomammotropin hormone 2 2.48831
COX4I2 cytochrome c oxidase subunit IV isoform 2 (lung) 2.48831
NKAPL NFKB activating protein-like 2.48831
ASB15 ankyrin repeat and SOCS box containing 15 2.48831
AKR7L aldo-keto reductase family 7-like (gene/pseudogene) 2.48831
SERPINA10 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10 2.48831
TMEM176B transmembrane protein 176B 2.48831
SLC35G5 solute carrier family 35, member G5 2.48831
SOX18 SRY (sex determining region Y)-box 18 2.48831
CNTNAP3 contactin associated protein-like 3 2.48831
HIST1H2BF histone cluster 1, H2bf 2.48831
CXCL1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) 2.48831
SFTPB surfactant protein B 2.48831
RNF39 ring finger protein 39 2.48831
NCK2 NCK adaptor protein 2 2.48831
HIC1 hypermethylated in cancer 1 2.48831
SLC22A6 solute carrier family 22 (organic anion transporter), member 6 2.48831
EMCN endomucin 2.48831
MAFK v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog K 2.48831
ZC2HC1C zinc finger, C2HC-type containing 1C 2.48831
C16ORF54 chromosome 16 open reading frame 54 2.48831
IRX1 iroquois homeobox 1 2.48831
SP5 Sp5 transcription factor 2.48831
CPLX3 complexin 3 2.48831
PTGER1 prostaglandin E receptor 1 (subtype EP1), 42kDa 2.48831
CACNG1 calcium channel, voltage-dependent, gamma subunit 1 2.48831
EDDM3A epididymal protein 3A 2.48831
CX3CR1 chemokine (C-X3-C motif) receptor 1 2.48831
LGI1 leucine-rich, glioma inactivated 1 2.48831
SHE Src homology 2 domain containing E 2.48831
GPRIN3 GPRIN family member 3 2.48831
MRC1 mannose receptor, C type 1 2.48831
TMPRSS3 transmembrane protease, serine 3 2.48831
MAGEC3 melanoma antigen family C3 2.48831
SIX3 SIX homeobox 3 2.48831
LOC124909439 uncharacterized LOC124909439 2.48831
MAJIN membrane anchored junction protein 2.48831
ODAPH odontogenesis associated phosphoprotein 2.48831
H2BC3 H2B clustered histone 3 2.48831
MPIG6B megakaryocyte and platelet inhibitory receptor G6b 2.48831
AJM1 apical junction component 1 homolog 2.48831
TBXT T-box transcription factor T 2.48831
NFIX nuclear factor I/X (CCAAT-binding transcription factor) 2.48831
DDC dopa decarboxylase (aromatic L-amino acid decarboxylase) 2.48831
YIPF7 Yip1 domain family, member 7 2.48831
CFAP276 cilia and flagella associated protein 276 2.48831
GLYATL1B glycine-N-acyltransferase like 1B 2.48831
LOC107986837 uncharacterized LOC107986837 2.48831
FAM90A11 family with sequence similarity 90 member A11 2.48831
OR1R1 olfactory receptor family 1 subfamily R member 1 2.48831
CSNK2A2IP casein kinase 2 subunit alpha' interacting protein 2.48831
TEX53 testis expressed 53 2.48831
FAM240A family with sequence similarity 240 member A 2.48831
PRRT1B proline rich transmembrane protein 1B 2.48831
SPAAR small regulatory polypeptide of amino acid response 2.48831
RHEX regulator of hemoglobinization and erythroid cell expansion 2.48831
FMO2 flavin containing monooxygenase 2 (non-functional) 2.48831
SLC1A7 solute carrier family 1 (glutamate transporter), member 7 2.48831
ABCC11 ATP-binding cassette, sub-family C (CFTR/MRP), member 11 2.48831
SCRT1 scratch family zinc finger 1 2.48831
NPNT nephronectin 2.48831
ZIC4 Zic family member 4 2.48831
CD79A CD79a molecule, immunoglobulin-associated alpha 2.48831
GGT6 gamma-glutamyltransferase 6 2.48831
PCDHA1 protocadherin alpha 1 2.48831
CAPN14 calpain 14 2.48831
ACTL10 actin-like 10 2.48831
LOC390937 Ets2 repressor factor-like 2.48831
IL6 interleukin 6 2.48831
OR2L2 olfactory receptor, family 2, subfamily L, member 2 2.48831
ARMCX5-GPRASP2 ARMCX5-GPRASP2 readthrough 2.48831
SELL selectin L 2.48831
FAM228A family with sequence similarity 228, member A 2.48831
OR7D2 olfactory receptor, family 7, subfamily D, member 2 2.48831
ZG16B zymogen granule protein 16B 2.48831
LTB lymphotoxin beta (TNF superfamily, member 3) 2.48831
SOAT2 sterol O-acyltransferase 2 2.48831
RASAL3 RAS protein activator like 3 2.48831
INSRR insulin receptor-related receptor 2.48831
FPR2 formyl peptide receptor 2 2.48831
PYGM phosphorylase, glycogen, muscle 2.48831
MUCL1 mucin-like 1 2.48831
NT5DC4 5'-nucleotidase domain containing 4 2.48831
INSM1 insulinoma-associated 1 2.48831
SH2D1B SH2 domain containing 1B 2.48831
QRFP pyroglutamylated RFamide peptide 2.48831
ANKRD61 ankyrin repeat domain 61 2.48831
ADGRA1 adhesion G protein-coupled receptor A1 2.48831
SYNE3 spectrin repeat containing, nuclear envelope family member 3 2.48831
HSD17B13 hydroxysteroid (17-beta) dehydrogenase 13 2.48831
DDX60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 2.48831
PXYLP1 2-phosphoxylose phosphatase 1 2.48831
DPH1 diphthamide biosynthesis 1 2.48831
NOG noggin 2.48831
ERICH4 glutamate-rich 4 2.48831
ABCG8 ATP-binding cassette, sub-family G (WHITE), member 8 2.48831
TRIM7 tripartite motif containing 7 2.48831
AKR1B15 aldo-keto reductase family 1, member B15 2.48831
FAM163A family with sequence similarity 163, member A 2.48831
CFB complement factor B 2.48831
GOLGA6B golgin A6 family, member B 2.48831
EVPLL envoplakin-like 2.48831
KISS1 KiSS-1 metastasis-suppressor 2.48831
IRGM immunity-related GTPase family, M 2.48831
CYS1 cystin 1 2.48831
FBXO47 F-box protein 47 2.48831
MAB21L1 mab-21-like 1 (C. elegans) 2.48831
NPBWR1 neuropeptides B/W receptor 1 2.48831
FAM135B family with sequence similarity 135, member B 2.48831
SLC11A1 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 1 2.48831
F2RL2 coagulation factor II (thrombin) receptor-like 2 2.48831
TDRD10 tudor domain containing 10 2.48831
CALHM3 calcium homeostasis modulator 3 2.48831
OLFML1 olfactomedin-like 1 2.48831
KLK7 kallikrein-related peptidase 7 2.48831
TRAPPC1 trafficking protein particle complex 1 2.48831
SAMD7 sterile alpha motif domain containing 7 2.48831
IGSF10 immunoglobulin superfamily, member 10 2.48831
CLPS colipase, pancreatic 2.48831
CARD9 caspase recruitment domain family, member 9 2.48831
NUTM2A NUT family member 2A 2.48831
DRC1 dynein regulatory complex subunit 1 2.48831
WFDC8 WAP four-disulfide core domain 8 2.48831
POTEF POTE ankyrin domain family, member F 2.48831
RNF224 ring finger protein 224 2.48831
SLC17A3 solute carrier family 17 (organic anion transporter), member 3 2.48831
SLC36A2 solute carrier family 36 (proton/amino acid symporter), member 2 2.48831
KCNJ15 potassium channel, inwardly rectifying subfamily J, member 15 2.48831
OR56B1 olfactory receptor, family 56, subfamily B, member 1 2.48831
PDK4 pyruvate dehydrogenase kinase, isozyme 4 2.48831
COL22A1 collagen, type XXII, alpha 1 2.48831
TRPM1 transient receptor potential cation channel, subfamily M, member 1 2.48831
ST18 suppression of tumorigenicity 18, zinc finger 2.48831
PPP1R3A protein phosphatase 1, regulatory subunit 3A 2.48831
FOXS1 forkhead box S1 2.48831
C1ORF185 chromosome 1 open reading frame 185 2.48831
SUN3 Sad1 and UNC84 domain containing 3 2.48831
LMX1B LIM homeobox transcription factor 1, beta 2.48831
KIF4B kinesin family member 4B 2.48831
CMTM2 CKLF-like MARVEL transmembrane domain containing 2 2.48831
CTAGE4 CTAGE family, member 4 2.48831
ERMN ermin, ERM-like protein 2.48831
CITED1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 2.48831
ENDOU endonuclease, polyU-specific 2.48831
MYF6 myogenic factor 6 (herculin) 2.48831
KCNK7 potassium channel, two pore domain subfamily K, member 7 2.48831
DEFB135 defensin, beta 135 2.48831
ADAM18 ADAM metallopeptidase domain 18 2.48831
SERPINB8 serpin peptidase inhibitor, clade B (ovalbumin), member 8 2.48831
LIMS3 LIM and senescent cell antigen-like domains 3 2.48831
PRAM1 PML-RARA regulated adaptor molecule 1 2.48831
KRTAP26-1 keratin associated protein 26-1 2.48831
PRR22 proline rich 22 2.44502
CER1 cerberus 1, DAN family BMP antagonist 2.44502
GPR146 G protein-coupled receptor 146 2.44502
TDG thymine-DNA glycosylase 2.41339
IZUMO4 IZUMO family member 4 2.38452
DLK2 delta-like 2 homolog (Drosophila) 2.34602
PTGDR prostaglandin D2 receptor (DP) 2.34602
LRRD1 leucine-rich repeats and death domain containing 1 2.34602
DLK1 delta-like 1 homolog (Drosophila) 2.34602
MGAM maltase-glucoamylase 2.34602
UPF3A UPF3 regulator of nonsense transcripts homolog A (yeast) 2.33723
ECI1 enoyl-CoA delta isomerase 1 2.32813
LHFPL4 lipoma HMGIC fusion partner-like 4 2.31883
B3GNT3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 2.30615
GALR3 galanin receptor 3 2.30615
NYAP1 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1 2.30554
YY1AP1 YY1 associated protein 1 2.30398
INPP5B inositol polyphosphate-5-phosphatase, 75kDa 2.30078
DFFA DNA fragmentation factor, 45kDa, alpha polypeptide 2.29362
ZNF175 zinc finger protein 175 2.27688
BLACAT1 bladder cancer associated transcript 1 (non-protein coding) 2.26393
NEK1 NIMA-related kinase 1 2.2458
ZNF695 zinc finger protein 695 2.22807
FADS3 fatty acid desaturase 3 2.1986
TAF10 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa 2.17108
RPS27 ribosomal protein S27 2.16983
ZFPM1 zinc finger protein, FOG family member 1 2.16983
KIF24 kinesin family member 24 2.16983
IL1RAP interleukin 1 receptor accessory protein 2.16439
CCDC122 coiled-coil domain containing 122 2.14875
BSPRY B-box and SPRY domain containing 2.14583
CHTF18 CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) 2.14197
FGF13 fibroblast growth factor 13 2.12266
COA5 cytochrome c oxidase assembly factor 5 2.11589
NOTCH4 notch 4 2.10627
SIN3B SIN3 transcription regulator family member B 2.10571
RAD51 RAD51 recombinase 2.10375
PLEKHF1 pleckstrin homology domain containing, family F (with FYVE domain) member 1 2.10337
CCDC43 coiled-coil domain containing 43 2.10144
PARP4 poly (ADP-ribose) polymerase family, member 4 2.09904
DNAL1 dynein, axonemal, light chain 1 2.0928
ZBTB18 zinc finger and BTB domain containing 18 2.08411
QDPR quinoid dihydropteridine reductase 2.06309
TMED1 transmembrane emp24 protein transport domain containing 1 2.06281
ACTR8 ARP8 actin-related protein 8 homolog (yeast) 2.06281
ING2 inhibitor of growth family, member 2 2.04284
SIRT2 sirtuin 2 2.03713
DOP1B DOP1 leucine zipper like protein B 2.03238
CEP350 centrosomal protein 350kDa 2.02613
SPPL2B signal peptide peptidase like 2B 2.02565
TCL1B T-cell leukemia/lymphoma 1B 2.02565
CYB5R4 cytochrome b5 reductase 4 2.02241
KCNQ2 potassium channel, voltage gated KQT-like subfamily Q, member 2 2.0128
PRMT9 protein arginine methyltransferase 9 2.00179
UNC5A unc-5 homolog A (C. elegans) 2.00124
RBM3 RNA binding motif (RNP1, RRM) protein 3 2.00124

decreased expression

Symbol Name Standardized Value
B3GALT2 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 -2.48831
TMPRSS11F transmembrane protease, serine 11F -2.48831
ARGFX arginine-fifty homeobox -2.48831
MAVS mitochondrial antiviral signaling protein -2.48831
SLC28A1 solute carrier family 28 (concentrative nucleoside transporter), member 1 -2.48831
AQP1 aquaporin 1 (Colton blood group) -2.48831
ERVFRD-1 endogenous retrovirus group FRD, member 1 -2.48831
ASB9 ankyrin repeat and SOCS box containing 9 -2.48831
CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4 -2.48831
HSPB6 heat shock protein, alpha-crystallin-related, B6 -2.48831
TULP2 tubby like protein 2 -2.48831
CASS4 Cas scaffolding protein family member 4 -2.48831
NGB neuroglobin -2.48831
RPA4 replication protein A4, 30kDa -2.48831
CCL27 chemokine (C-C motif) ligand 27 -2.48831
OXER1 oxoeicosanoid (OXE) receptor 1 -2.48831
CHRDL2 chordin-like 2 -2.48831
TMEM217 transmembrane protein 217 -2.48831
CCDC60 coiled-coil domain containing 60 -2.48831
QRSL1 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 -2.48831
NDUFB7 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa -2.48831
IFITM1 interferon induced transmembrane protein 1 -2.48831
TRIB2 tribbles pseudokinase 2 -2.48831
FGF7 fibroblast growth factor 7 -2.48831
FAM167B family with sequence similarity 167, member B -2.48831
BTBD19 BTB (POZ) domain containing 19 -2.48831
GRHL3 grainyhead-like 3 (Drosophila) -2.48831
UPK3A uroplakin 3A -2.48831
WNK4 WNK lysine deficient protein kinase 4 -2.48831
LKAAEAR1 LKAAEAR motif containing 1 -2.48831
NLRP1 NLR family, pyrin domain containing 1 -2.48831
DYDC1 DPY30 domain containing 1 -2.48831
SH3TC2 SH3 domain and tetratricopeptide repeats 2 -2.48831
GPR68 G protein-coupled receptor 68 -2.48831
ZNF764 zinc finger protein 764 -2.48831
LOC122539214 Zinc finger protein LOC122539214 -2.48831
RGS7 regulator of G-protein signaling 7 -2.48831
CDH22 cadherin 22, type 2 -2.48831
MSMP microseminoprotein, prostate associated -2.48831
H3-3B H3.3 histone B -2.48831
CNR2 cannabinoid receptor 2 (macrophage) -2.48831
SLC49A3 solute carrier family 49 member 3 -2.48831
ACSS1 acyl-CoA synthetase short-chain family member 1 -2.48831
ZNF831 zinc finger protein 831 -2.48831
EIF4E1B eukaryotic translation initiation factor 4E family member 1B -2.48831
TENT5D terminal nucleotidyltransferase 5D -2.48831
MUCL3 mucin like 3 -2.48831
MACROH2A1 macroH2A.1 histone -2.48831
RPL7A ribosomal protein L7a -2.48831
RAD51D RAD51 paralog D -2.48831
TAC1 tachykinin, precursor 1 -2.48831
SLC35A4 solute carrier family 35, member A4 -2.48831
BEST1 bestrophin 1 -2.48831
OSTN osteocrin -2.48831
RAB30 RAB30, member RAS oncogene family -2.48831
PCDH15 protocadherin-related 15 -2.48831
NTF4 neurotrophin 4 -2.48831
TEX11 testis expressed 11 -2.48831
CTXN2 cortexin 2 -2.48831
TMOD4 tropomodulin 4 (muscle) -2.48831
OCM oncomodulin -2.48831
ANKRD55 ankyrin repeat domain 55 -2.48831
CHMP1B charged multivesicular body protein 1B -2.48831
FAN1 FANCD2/FANCI-associated nuclease 1 -2.47604
KDM6A lysine (K)-specific demethylase 6A -2.43643
LRRC51 leucine rich repeat containing 51 -2.43289
SPDYE18 speedy/RINGO cell cycle regulator family member E18 -2.42938
UBE2C ubiquitin-conjugating enzyme E2C -2.39418
AKAP10 A kinase (PRKA) anchor protein 10 -2.37247
CIDEB cell death-inducing DFFA-like effector b -2.36288
CNTN3 contactin 3 (plasmacytoma associated) -2.36288
LRRC75A leucine rich repeat containing 75A -2.26201
STAC3 SH3 and cysteine rich domain 3 -2.25107
PPP1R13B protein phosphatase 1, regulatory subunit 13B -2.24855
APLP1 amyloid beta (A4) precursor-like protein 1 -2.24839
SNRNP48 small nuclear ribonucleoprotein 48kDa (U11/U12) -2.2458
SCN9A sodium channel, voltage gated, type IX alpha subunit -2.23253
POM121C POM121 transmembrane nucleoporin C -2.21226
RNF216 ring finger protein 216 -2.20041
DMAC2L distal membrane arm assembly component 2 like -2.19313
JARID2 jumonji, AT rich interactive domain 2 -2.19035
BMP2K BMP2 inducible kinase -2.17821
GALE UDP-galactose-4-epimerase -2.16005
GOLGA7 golgin A7 -2.14583
GPHA2 glycoprotein hormone alpha 2 -2.14422
PROKR2 prokineticin receptor 2 -2.14422
TNS1-AS1 TNS1 antisense RNA 1 -2.14197
B3GAT3 beta-1,3-glucuronyltransferase 3 -2.14197
LIPT2 lipoyl(octanoyl) transferase 2 (putative) -2.13415
ALKBH2 alkB, alkylation repair homolog 2 (E. coli) -2.12925
ELL3 elongation factor RNA polymerase II-like 3 -2.12609
MYT1L myelin transcription factor 1-like -2.12266
C2ORF80 chromosome 2 open reading frame 80 -2.12266
GPR34 G protein-coupled receptor 34 -2.12266
MCOLN3 mucolipin 3 -2.11445
SENP8 SUMO/sentrin specific peptidase family member 8 -2.11397
RMP64 ribonuclease MRP subunit p64 -2.10915
KDM6B lysine (K)-specific demethylase 6B -2.1089
COL26A1 collagen, type XXVI, alpha 1 -2.10337
ARTN artemin -2.09994
STK10 serine/threonine kinase 10 -2.09904
OVOL2 ovo-like zinc finger 2 -2.09904
ZNF737 zinc finger protein 737 -2.09809
GPX2 glutathione peroxidase 2 -2.09282
FARSB phenylalanyl-tRNA synthetase, beta subunit -2.09151
STARD5 StAR-related lipid transfer (START) domain containing 5 -2.08703
SPDYE3 speedy/RINGO cell cycle regulator family member E3 -2.08411
CPXM1 carboxypeptidase X (M14 family), member 1 -2.07207
ZNF425 zinc finger protein 425 -2.06881
CAMTA2 calmodulin binding transcription activator 2 -2.06309
ZNF26 zinc finger protein 26 -2.02613
ZBTB46 zinc finger and BTB domain containing 46 -2.02565
PCNP PEST proteolytic signal containing nuclear protein -2.01618
EMB embigin -2.00124
INPPL1 inositol polyphosphate phosphatase-like 1 -2.00124
CDYL chromodomain protein, Y-like -2.00124
CEP83 centrosomal protein 83kDa -2.00124
WDR36 WD repeat domain 36 -2.00124