Nevirapine_A-172 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Nevirapine perturbation in A-172 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Nevirapine_A-172 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FBN1 fibrillin 1 0.0793158
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.0487932
FNDC3B fibronectin type III domain containing 3B 0.0448539
SOD2 superoxide dismutase 2, mitochondrial 0.0444531
AKT3 v-akt murine thymoma viral oncogene homolog 3 0.0405794
UBC ubiquitin C 0.0402215
LOXL2 lysyl oxidase-like 2 0.0388598
PSD3 pleckstrin and Sec7 domain containing 3 0.0358044
SBF2 SET binding factor 2 0.0352419
ATP13A3 ATPase type 13A3 0.0344388
OGA O-GlcNAcase 0.0301905
DPYSL3 dihydropyrimidinase-like 3 0.0300928
COL1A2 collagen, type I, alpha 2 0.0285955
OPTN optineurin 0.0271623
SQSTM1 sequestosome 1 0.0270992
IQGAP1 IQ motif containing GTPase activating protein 1 0.0269109
GPC6 glypican 6 0.025729
KLF7 Kruppel-like factor 7 (ubiquitous) 0.0249308
ESYT2 extended synaptotagmin-like protein 2 0.024871
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b 0.0244386
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0239186
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 0.0237972
GLS2 glutaminase 2 (liver, mitochondrial) 0.0237941
CD109 CD109 molecule 0.0231527
YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta 0.0227689
AUTS2 autism susceptibility candidate 2 0.0223919
WDFY1 WD repeat and FYVE domain containing 1 0.0217325
GOLGA4 golgin A4 0.0214583
ADAM17 ADAM metallopeptidase domain 17 0.021386
KDM3A lysine (K)-specific demethylase 3A 0.0213624
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0211976
NAV2 neuron navigator 2 0.0210051
PLEC plectin 0.0208357
MEF2A myocyte enhancer factor 2A 0.0206344
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0201444
NT5C2 5'-nucleotidase, cytosolic II 0.0198544
ARRDC3 arrestin domain containing 3 0.0194049
MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 0.0191385
STC1 stanniocalcin 1 0.0190545
DLG1 discs, large homolog 1 (Drosophila) 0.0189092
SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase 0.018749
RNF145 ring finger protein 145 0.0186956
SH3BP5 SH3-domain binding protein 5 (BTK-associated) 0.0185883
MYH9 myosin, heavy chain 9, non-muscle 0.0185746
HIP1 huntingtin interacting protein 1 0.0184995
HELZ helicase with zinc finger 0.01836
CYLD cylindromatosis (turban tumor syndrome) 0.0180858
TRPM7 transient receptor potential cation channel, subfamily M, member 7 0.0180703
NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) 0.0179871
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.0177923
DSCAM Down syndrome cell adhesion molecule 0.0177728
SSBP2 single-stranded DNA binding protein 2 0.0176971
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0176787
TSC22D2 TSC22 domain family, member 2 0.0174111
AVL9 AVL9 homolog (S. cerevisiase) 0.0170416
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0169334
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0168176
C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 0.0166128
UBE2O ubiquitin-conjugating enzyme E2O 0.0165284
TENT4A terminal nucleotidyltransferase 4A 0.0165069
SEPTIN9 septin 9 0.0164827
FMNL2 formin-like 2 0.0162745
ANKRD33B ankyrin repeat domain 33B 0.0162657
TNIP1 TNFAIP3 interacting protein 1 0.0162079
USP12 ubiquitin specific peptidase 12 0.0160591
FLNB filamin B, beta 0.015967
TMOD1 tropomodulin 1 0.0158343
TRA2A transformer 2 alpha homolog (Drosophila) 0.0157648
SDC4 syndecan 4 0.0157261
RNMT RNA (guanine-7-) methyltransferase 0.015676
DCAF6 DDB1 and CUL4 associated factor 6 0.0153426
NAMPT nicotinamide phosphoribosyltransferase 0.0152682
DPYSL2 dihydropyrimidinase-like 2 0.0152547
SLC22A23 solute carrier family 22, member 23 0.0152061
EGLN1 egl-9 family hypoxia-inducible factor 1 0.0151681
C1D C1D nuclear receptor corepressor 0.0149127
DENND4C DENN/MADD domain containing 4C 0.0148343
YEATS2 YEATS domain containing 2 0.0146743
SKIC3 SKI3 subunit of superkiller complex 0.0145653
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0144315
XPO1 exportin 1 0.0144196
PDK3 pyruvate dehydrogenase kinase, isozyme 3 0.0142948
FNBP1L formin binding protein 1-like 0.0142624
MARCHF6 membrane associated ring-CH-type finger 6 0.0142392
NOS1AP nitric oxide synthase 1 (neuronal) adaptor protein 0.0142062
MIMS1 mitochondrial inner membrane scaffold 1 0.0141779
NFIX nuclear factor I/X (CCAAT-binding transcription factor) 0.0140827
DENND4A DENN/MADD domain containing 4A 0.0140089
APP amyloid beta (A4) precursor protein 0.0138837
ZNF207 zinc finger protein 207 0.0138535
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0137773
UBE2H ubiquitin-conjugating enzyme E2H 0.0137769
COL3A1 collagen, type III, alpha 1 0.0136668
UBE2E1 ubiquitin-conjugating enzyme E2E 1 0.0136391
TFG TRK-fused gene 0.0135466
MAP3K2 mitogen-activated protein kinase kinase kinase 2 0.0132204
SPAG9 sperm associated antigen 9 0.0131891
RNF24 ring finger protein 24 0.0130904
ZNF148 zinc finger protein 148 0.0130871
HBP1 HMG-box transcription factor 1 0.0130821

decreased expression

Symbol Name Standardized Value
VIM vimentin -0.24423
TMSB10 thymosin beta 10 -0.182215
IGFBP3 insulin-like growth factor binding protein 3 -0.16753
CDH13 cadherin 13 -0.130632
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.121288
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.119785
PODXL podocalyxin-like -0.110197
MT2A metallothionein 2A -0.102342
MAP1B microtubule-associated protein 1B -0.0980815
AKAP12 A kinase (PRKA) anchor protein 12 -0.0809568
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0796849
FN1 fibronectin 1 -0.0729475
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0677115
LOX lysyl oxidase -0.0673034
COL5A1 collagen, type V, alpha 1 -0.0659964
SUCNR1 succinate receptor 1 -0.0598589
CACNA2D3 calcium channel, voltage-dependent, alpha 2/delta subunit 3 -0.0592093
ABI3BP ABI family, member 3 (NESH) binding protein -0.0591603
SLC39A11 solute carrier family 39, member 11 -0.0526659
CSTB cystatin B (stefin B) -0.0507129
EGFR epidermal growth factor receptor -0.0479581
B2M beta-2-microglobulin -0.0473389
NAV1 neuron navigator 1 -0.045354
LMNA lamin A/C -0.0452029
PRSS23 protease, serine, 23 -0.0440144
AHNAK AHNAK nucleoprotein -0.0437218
DIRAS3 DIRAS family, GTP-binding RAS-like 3 -0.0410593
S100A10 S100 calcium binding protein A10 -0.0407245
TPM4 tropomyosin 4 -0.0404658
EFNA5 ephrin-A5 -0.0398625
POTEF POTE ankyrin domain family, member F -0.0388696
SAMD9 sterile alpha motif domain containing 9 -0.0384818
PLAT plasminogen activator, tissue -0.0380946
CALR calreticulin -0.0380068
RIGI RNA sensor RIG-I -0.0369221
HLA-B major histocompatibility complex, class I, B -0.0367809
IFITM3 interferon induced transmembrane protein 3 -0.0367361
MX2 MX dynamin-like GTPase 2 -0.0360932
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0359505
PTMA prothymosin, alpha -0.0342577
S100A6 S100 calcium binding protein A6 -0.0342485
ASPH aspartate beta-hydroxylase -0.0342009
CANX calnexin -0.0339932
TUBB4B tubulin, beta 4B class IVb -0.0322524
RPS6KA2 ribosomal protein S6 kinase, 90kDa, polypeptide 2 -0.0310986
MEIS2 Meis homeobox 2 -0.0310965
FSTL1 follistatin-like 1 -0.0308426
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0298497
MACF1 microtubule-actin crosslinking factor 1 -0.02954
SLC38A1 solute carrier family 38, member 1 -0.0289023
S100A11 S100 calcium binding protein A11 -0.0281
LRRC17 leucine rich repeat containing 17 -0.0276684
FLT1 fms-related tyrosine kinase 1 -0.0274877
FRMD4A FERM domain containing 4A -0.0273919
SP100 SP100 nuclear antigen -0.0273873
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0273773
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0271439
DGKG diacylglycerol kinase, gamma 90kDa -0.0271234
ALCAM activated leukocyte cell adhesion molecule -0.0270112
CAVIN1 caveolae associated protein 1 -0.0268414
CD44 CD44 molecule (Indian blood group) -0.0262113
PBX3 pre-B-cell leukemia homeobox 3 -0.0258522
TPM1 tropomyosin 1 (alpha) -0.0258035
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 -0.0254152
SORBS2 sorbin and SH3 domain containing 2 -0.0252849
MBNL1 muscleblind-like splicing regulator 1 -0.0248504
HS3ST3A1 heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 -0.02476
TPT1 tumor protein, translationally-controlled 1 -0.0247532
IFITM1 interferon induced transmembrane protein 1 -0.0245303
TAGLN2 transgelin 2 -0.0243438
CYTH3 cytohesin 3 -0.0235757
RPL35A ribosomal protein L35a -0.0232487
FTL ferritin, light polypeptide -0.0230913
SEC61G Sec61 gamma subunit -0.0230437
PLXNA2 plexin A2 -0.0228202
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.0227421
COL8A1 collagen, type VIII, alpha 1 -0.0223117
PKM pyruvate kinase, muscle -0.0222964
ISG15 ISG15 ubiquitin-like modifier -0.0222003
SPDL1 spindle apparatus coiled-coil protein 1 -0.022179
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0219123
PGK1 phosphoglycerate kinase 1 -0.0218723
HLA-C major histocompatibility complex, class I, C -0.021833
RPL37A ribosomal protein L37a -0.0215775
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.021524
CUX1 cut-like homeobox 1 -0.0214918
ANKRD11 ankyrin repeat domain 11 -0.021436
RPL36 ribosomal protein L36 -0.0212561
CDC42EP3 CDC42 effector protein (Rho GTPase binding) 3 -0.0211384
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.020804
CCND1 cyclin D1 -0.0207409
PFN1 profilin 1 -0.0202341
EXT1 exostosin glycosyltransferase 1 -0.0201911
RPS24 ribosomal protein S24 -0.0200163
IFI6 interferon, alpha-inducible protein 6 -0.0200095
SH3KBP1 SH3-domain kinase binding protein 1 -0.0199329
TMSB4X thymosin beta 4, X-linked -0.0198176
CD59 CD59 molecule, complement regulatory protein -0.019702
PCDH7 protocadherin 7 -0.019544
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric -0.0194554