Nuclear speckles Gene Set

Dataset CM4AI U2OS Cell Map Protein Localization Assemblies
Category structural or functional annotations
Type biological term
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Genes

364 proteins comprising Nuclear speckles assembly using integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset.

Symbol Name
AAGAB alpha- and gamma-adaptin binding protein
ACBD6 acyl-CoA binding domain containing 6
ACIN1 apoptotic chromatin condensation inducer 1
AFF4 AF4/FMR2 family, member 4
AGAP2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
AK6 adenylate kinase 6
ALMS1 Alstrom syndrome protein 1
ANKRD11 ankyrin repeat domain 11
ANXA9 annexin A9
AP2A1 adaptor-related protein complex 2, alpha 1 subunit
AP3B1 adaptor-related protein complex 3, beta 1 subunit
AP5Z1 adaptor-related protein complex 5, zeta 1 subunit
AQR aquarius intron-binding spliceosomal factor
ARGLU1 arginine and glutamate rich 1
ARHGEF10 Rho guanine nucleotide exchange factor (GEF) 10
ARMCX5 armadillo repeat containing, X-linked 5
ASAP3 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
ASXL2 additional sex combs like transcriptional regulator 2
ATXN7L3 ataxin 7-like 3
AUTS2 autism susceptibility candidate 2
BAZ2A bromodomain adjacent to zinc finger domain, 2A
BAZ2B bromodomain adjacent to zinc finger domain, 2B
BCAS2 breast carcinoma amplified sequence 2
BCLAF1 BCL2-associated transcription factor 1
BCOR BCL6 corepressor
BHLHE22 basic helix-loop-helix family, member e22
BLTP3B bridge-like lipid transfer protein family member 3B
BMP2K BMP2 inducible kinase
BRD1 bromodomain containing 1
BRK1 BRICK1, SCAR/WAVE actin-nucleating complex subunit
C12ORF57 chromosome 12 open reading frame 57
C18ORF25 chromosome 18 open reading frame 25
C1ORF226 chromosome 1 open reading frame 226
C1S complement component 1, s subcomponent
CACTIN cactin, spliceosome C complex subunit
CBX5 chromobox homolog 5
CCAR1 cell division cycle and apoptosis regulator 1
CCDC12 coiled-coil domain containing 12
CCDC32 coiled-coil domain containing 32
CCDC97 coiled-coil domain containing 97
CCNL1 cyclin L1
CDC40 cell division cycle 40
CDC5L cell division cycle 5-like
CDC7 cell division cycle 7
CDCA7L cell division cycle associated 7-like
CDK11B cyclin-dependent kinase 11B
CDK12 cyclin-dependent kinase 12
CDYL chromodomain protein, Y-like
CEBPZ CCAAT/enhancer binding protein (C/EBP), zeta
CHD1 chromodomain helicase DNA binding protein 1
CHD6 chromodomain helicase DNA binding protein 6
CHD9 chromodomain helicase DNA binding protein 9
CHTOP chromatin target of PRMT1
CLASRP CLK4-associating serine/arginine rich protein
COIL coilin
CPSF6 cleavage and polyadenylation specific factor 6, 68kDa
CRY2 cryptochrome circadian clock 2
CSNK2A2 casein kinase 2, alpha prime polypeptide
CSTPP1 centriolar satellite-associated tubulin polyglutamylase complex regulator 1
CTC1 CTS telomere maintenance complex component 1
CTNNBL1 catenin, beta like 1
CWC22 CWC22 spliceosome-associated protein
CWC25 CWC25 spliceosome-associated protein homolog (S. cerevisiae)
CWF19L1 CWF19-like 1, cell cycle control (S. pombe)
CWF19L2 CWF19-like 2, cell cycle control (S. pombe)
DAZAP2 DAZ associated protein 2
DBF4 DBF4 zinc finger
DCP2 decapping mRNA 2
DDX39A DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A
DDX42 DEAD (Asp-Glu-Ala-Asp) box helicase 42
DDX46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
DENND2B DENN domain containing 2B
DHRS2 dehydrogenase/reductase (SDR family) member 2
DHX16 DEAH (Asp-Glu-Ala-His) box polypeptide 16
DHX38 DEAH (Asp-Glu-Ala-His) box polypeptide 38
DHX8 DEAH (Asp-Glu-Ala-His) box polypeptide 8
DNAJC17 DnaJ (Hsp40) homolog, subfamily C, member 17
DPCD deleted in primary ciliary dyskinesia homolog (mouse)
DROSHA drosha, ribonuclease type III
DZIP1 DAZ interacting zinc finger protein 1
EAF1 ELL associated factor 1
EFTUD2 elongation factor Tu GTP binding domain containing 2
ELL elongation factor RNA polymerase II
ELL2 elongation factor, RNA polymerase II, 2
ERCC3 excision repair cross-complementation group 3
ERH enhancer of rudimentary homolog (Drosophila)
ESS2 ess-2 splicing factor homolog
EXOSC7 exosome component 7
FAM219A family with sequence similarity 219, member A
FAM9B family with sequence similarity 9, member B
FANCM Fanconi anemia, complementation group M
FBRS fibrosin
FBRSL1 fibrosin-like 1
FBXL4 F-box and leucine-rich repeat protein 4
FBXO38 F-box protein 38
FCHO1 FCH domain only 1
FGF1 fibroblast growth factor 1 (acidic)
FGF13 fibroblast growth factor 13
FHIP2A FHF complex subunit HOOK interacting protein 2A
FLT4 fms-related tyrosine kinase 4
FNBP4 formin binding protein 4
GAB3 GRB2-associated binding protein 3
GADD45A growth arrest and DNA-damage-inducible, alpha
GEMIN2 gem (nuclear organelle) associated protein 2
GEMIN7 gem (nuclear organelle) associated protein 7
GMEB1 glucocorticoid modulatory element binding protein 1
GMEB2 glucocorticoid modulatory element binding protein 2
GNAQ guanine nucleotide binding protein (G protein), q polypeptide
GNB5 guanine nucleotide binding protein (G protein), beta 5
GPATCH2 G patch domain containing 2
GPATCH2L G patch domain containing 2-like
GPATCH8 G patch domain containing 8
GPC4 glypican 4
GRAMD1C GRAM domain containing 1C
GTF2E2 general transcription factor IIE, polypeptide 2, beta 34kDa
GTF2H1 general transcription factor IIH, polypeptide 1, 62kDa
GTF2H3 general transcription factor IIH, polypeptide 3, 34kDa
GTF2H4 general transcription factor IIH, polypeptide 4, 52kDa
GTF2I general transcription factor IIi
GTF3C5 general transcription factor IIIC, polypeptide 5, 63kDa
H1-4 H1.4 linker histone, cluster member
HAUS2 HAUS augmin-like complex, subunit 2
HAUS6 HAUS augmin-like complex, subunit 6
HDAC4 histone deacetylase 4
HDGFL2 HDGF like 2
HEXIM2 hexamethylene bis-acetamide inducible 2
HIKESHI heat shock protein nuclear import factor hikeshi
HIRIP3 HIRA interacting protein 3
HTATSF1 HIV-1 Tat specific factor 1
ICE2 interactor of little elongation complex ELL subunit 2
IL7R interleukin 7 receptor
ILRUN inflammation and lipid regulator with UBA-like and NBR1-like domains
INTS5 integrator complex subunit 5
IQUB IQ motif and ubiquitin domain containing
ITPKC inositol-trisphosphate 3-kinase C
IWS1 IWS1 homolog (S. cerevisiae)
JMJD6 jumonji domain containing 6
KANSL1 KAT8 regulatory NSL complex subunit 1
KAT6A K(lysine) acetyltransferase 6A
KCNN4 potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 4
KIF22 kinesin family member 22
KLHL7 kelch-like family member 7
KMT2A lysine (K)-specific methyltransferase 2A
L3MBTL2 l(3)mbt-like 2 (Drosophila)
LENG8 leukocyte receptor cluster (LRC) member 8
LEO1 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
LIMK1 LIM domain kinase 1
LIMK2 LIM domain kinase 2
LIN9 lin-9 DREAM MuvB core complex component
LMNA lamin A/C
LMTK2 lemur tyrosine kinase 2
LSM2 LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
LUC7L LUC7-like (S. cerevisiae)
LUC7L2 LUC7-like 2 (S. cerevisiae)
LUC7L3 LUC7-like 3 (S. cerevisiae)
MAGEA4 melanoma antigen family A4
MAPK14 mitogen-activated protein kinase 14
MAST3 microtubule associated serine/threonine kinase 3
MAX MYC associated factor X
MCRS1 microspherule protein 1
MED17 mediator complex subunit 17
MEPCE methylphosphate capping enzyme
MLLT1 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1
MLLT3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
MNAT1 MNAT CDK-activating kinase assembly factor 1
MNS1 meiosis-specific nuclear structural 1
MORF4L1 mortality factor 4 like 1
MSL3 male-specific lethal 3 homolog (Drosophila)
MYADM myeloid-associated differentiation marker
N4BP2L2 NEDD4 binding protein 2-like 2
NAF1 nuclear assembly factor 1 ribonucleoprotein
NCBP3 nuclear cap binding subunit 3
NDC80 NDC80 kinetochore complex component
NDUFAB1 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa
NEFL neurofilament, light polypeptide
NEUROG3 neurogenin 3
NFATC4 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4
NKAP NFKB activating protein
NMT2 N-myristoyltransferase 2
NRBF2 nuclear receptor binding factor 2
NUBP2 nucleotide binding protein 2
NUP43 nucleoporin 43kDa
OIP5 Opa interacting protein 5
PARN poly(A)-specific ribonuclease
PAXBP1 PAX3 and PAX7 binding protein 1
PCGF1 polycomb group ring finger 1
PCGF3 polycomb group ring finger 3
PCGF5 polycomb group ring finger 5
PHAF1 phagosome assembly factor 1
PHF20 PHD finger protein 20
PHF8 PHD finger protein 8
PHLDB3 pleckstrin homology-like domain, family B, member 3
PIP4K2C phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
PIP5K1C phosphatidylinositol-4-phosphate 5-kinase, type I, gamma
PLEKHN1 pleckstrin homology domain containing, family N member 1
PLRG1 pleiotropic regulator 1
PNN pinin, desmosome associated protein
POGZ pogo transposable element with ZNF domain
POLE2 polymerase (DNA directed), epsilon 2, accessory subunit
POLR2D polymerase (RNA) II (DNA directed) polypeptide D
POLR3B polymerase (RNA) III (DNA directed) polypeptide B
POMP proteasome maturation protein
PPHLN1 periphilin 1
PPIE peptidylprolyl isomerase E (cyclophilin E)
PPIG peptidylprolyl isomerase G (cyclophilin G)
PPIL3 peptidylprolyl isomerase (cyclophilin)-like 3
PPIL4 peptidylprolyl isomerase (cyclophilin)-like 4
PPP1R16B protein phosphatase 1, regulatory subunit 16B
PPP4R2 protein phosphatase 4, regulatory subunit 2
PPP4R3A protein phosphatase 4 regulatory subunit 3A
PPP4R3B protein phosphatase 4 regulatory subunit 3B
PPRC1 peroxisome proliferator-activated receptor gamma, coactivator-related 1
PRKAA1 protein kinase, AMP-activated, alpha 1 catalytic subunit
PRMT1 protein arginine methyltransferase 1
PRPF19 pre-mRNA processing factor 19
PRPF3 pre-mRNA processing factor 3
PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
PRPF4B pre-mRNA processing factor 4B
PRPF8 pre-mRNA processing factor 8
RAB12 RAB12, member RAS oncogene family
RAD18 RAD18 E3 ubiquitin protein ligase
RAD52 RAD52 homolog (S. cerevisiae)
RALGAPB Ral GTPase activating protein, beta subunit (non-catalytic)
RBM10 RNA binding motif protein 10
RBM15 RNA binding motif protein 15
RBM15B RNA binding motif protein 15B
RBM17 RNA binding motif protein 17
RBM22 RNA binding motif protein 22
RBM25 RNA binding motif protein 25
RBM26 RNA binding motif protein 26
RBM27 RNA binding motif protein 27
RBM42 RNA binding motif protein 42
RBM5 RNA binding motif protein 5
RBM6 RNA binding motif protein 6
RBM8A RNA binding motif protein 8A
RCAN3 RCAN family member 3
RCL1 RNA terminal phosphate cyclase-like 1
RFXAP regulatory factor X-associated protein
RING1 ring finger protein 1
RNF111 ring finger protein 111
RNF187 ring finger protein 187
RNF34 ring finger protein 34, E3 ubiquitin protein ligase
RNPC3 RNA-binding region (RNP1, RRM) containing 3
RP9 retinitis pigmentosa 9 (autosomal dominant)
RPLP2 ribosomal protein, large, P2
RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6
RSBN1L round spermatid basic protein 1-like
RSRC1 arginine/serine-rich coiled-coil 1
RSRC2 arginine/serine-rich coiled-coil 2
RTF1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
RYBP RING1 and YY1 binding protein
SAFB scaffold attachment factor B
SAMD10 sterile alpha motif domain containing 10
SAP18 Sin3A-associated protein, 18kDa
SAP30BP SAP30 binding protein
SART1 squamous cell carcinoma antigen recognized by T cells
SCAF11 SR-related CTD-associated factor 11
SCAF8 SR-related CTD-associated factor 8
SCAND1 SCAN domain containing 1
SERPINB13 serpin peptidase inhibitor, clade B (ovalbumin), member 13
SETD1B SET domain containing 1B
SETD2 SET domain containing 2
SF3B1 splicing factor 3b, subunit 1, 155kDa
SF3B2 splicing factor 3b, subunit 2, 145kDa
SF3B4 splicing factor 3b, subunit 4, 49kDa
SFSWAP splicing factor, suppressor of white-apricot family
SHQ1 SHQ1, H/ACA ribonucleoprotein assembly factor
SIRT1 sirtuin 1
SLC4A1AP solute carrier family 4 (anion exchanger), member 1, adaptor protein
SLTM SAFB-like, transcription modulator
SLU7 SLU7 splicing factor homolog (S. cerevisiae)
SMC4 structural maintenance of chromosomes 4
SMTNL2 smoothelin-like 2
SMURF2 SMAD specific E3 ubiquitin protein ligase 2
SNIP1 Smad nuclear interacting protein 1
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5)
SNRPA small nuclear ribonucleoprotein polypeptide A
SNRPA1 small nuclear ribonucleoprotein polypeptide A'
SNRPB2 small nuclear ribonucleoprotein polypeptide B
SNRPC small nuclear ribonucleoprotein polypeptide C
SNW1 SNW domain containing 1
SNX18 sorting nexin 18
SOCS6 suppressor of cytokine signaling 6
SOHLH1 spermatogenesis and oogenesis specific basic helix-loop-helix 1
SON SON DNA binding protein
SPATA5L1 spermatogenesis associated 5-like 1
SPINDOC spindlin interactor and repressor of chromatin binding
SREK1 splicing regulatory glutamine/lysine-rich protein 1
SRPK1 SRSF protein kinase 1
SRRM2 serine/arginine repetitive matrix 2
SRRT serrate, RNA effector molecule
SRSF11 serine/arginine-rich splicing factor 11
SRSF3 serine/arginine-rich splicing factor 3
SRSF4 serine/arginine-rich splicing factor 4
SRSF6 serine/arginine-rich splicing factor 6
SUPT16H suppressor of Ty 16 homolog (S. cerevisiae)
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae)
SYF2 SYF2 pre-mRNA-splicing factor
SYNJ1 synaptojanin 1
TAB1 TGF-beta activated kinase 1/MAP3K7 binding protein 1
TAB3 TGF-beta activated kinase 1/MAP3K7 binding protein 3
TADA2A transcriptional adaptor 2A
TADA2B transcriptional adaptor 2B
TAF5L TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa
TBC1D8 TBC1 domain family, member 8 (with GRAM domain)
TCEANC2 transcription elongation factor A (SII) N-terminal and central domain containing 2
TCF12 transcription factor 12
TCP11L2 t-complex 11, testis-specific-like 2
TGFBR3 transforming growth factor, beta receptor III
TGIF2 TGFB-induced factor homeobox 2
THOC1 THO complex 1
THOC5 THO complex 5
THOC7 THO complex 7
THRAP3 thyroid hormone receptor associated protein 3
TLE5 TLE family member 5, transcriptional modulator
TMEM259 transmembrane protein 259
TMEM94 transmembrane protein 94
TNIP1 TNFAIP3 interacting protein 1
TOE1 target of EGR1, member 1 (nuclear)
TOP3B topoisomerase (DNA) III beta
TOR1B torsin family 1, member B (torsin B)
TRERF1 transcriptional regulating factor 1
TRIP12 thyroid hormone receptor interactor 12
TSC22D3 TSC22 domain family, member 3
TSSC4 tumor suppressing subtransferable candidate 4
TTC33 tetratricopeptide repeat domain 33
TUSC1 tumor suppressor candidate 1
TUT1 terminal uridylyl transferase 1, U6 snRNA-specific
TXNL4A thioredoxin-like 4A
U2AF2 U2 small nuclear RNA auxiliary factor 2
U2SURP U2 snRNP-associated SURP domain containing
UBE4A ubiquitination factor E4A
UBR2 ubiquitin protein ligase E3 component n-recognin 2
UFC1 ubiquitin-fold modifier conjugating enzyme 1
UNK unkempt family zinc finger
USP22 ubiquitin specific peptidase 22
USP42 ubiquitin specific peptidase 42
USP43 ubiquitin specific peptidase 43
VIRMA vir like m6A methyltransferase associated
VPS72 vacuolar protein sorting 72 homolog (S. cerevisiae)
WASHC5 WASH complex subunit 5
WBP11 WW domain binding protein 11
WBP4 WW domain binding protein 4
WDFY2 WD repeat and FYVE domain containing 2
WDR33 WD repeat domain 33
WHR1 winged helix repair factor 1
WIPI2 WD repeat domain, phosphoinositide interacting 2
WRN Werner syndrome, RecQ helicase-like
WTAP Wilms tumor 1 associated protein
XAB2 XPA binding protein 2
YAF2 YY1 associated factor 2
YJU2B YJU2 splicing factor homolog B
ZAR1L zygote arrest 1-like
ZC3H14 zinc finger CCCH-type containing 14
ZC3H18 zinc finger CCCH-type containing 18
ZDBF2 zinc finger, DBF-type containing 2
ZFC3H1 zinc finger, C3H1-type containing
ZNF217 zinc finger protein 217
ZNF395 zinc finger protein 395
ZNF446 zinc finger protein 446
ZNF638 zinc finger protein 638
ZNF843 zinc finger protein 843
ZRANB2 zinc finger, RAN-binding domain containing 2
ZSCAN5A zinc finger and SCAN domain containing 5A