OVMIU Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description cell line derived from -666 (Catalogue of Somatic Mutations In Cancer)
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Genes

75 genes with high or low copy number in OVMIU relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
CENPF centromere protein F, 350/400kDa 2.93899
TCEA1 transcription elongation factor A (SII), 1 2.49065
RP1 retinitis pigmentosa 1 (autosomal dominant) 2.49065
SOX17 SRY (sex determining region Y)-box 17 2.49065
MRPL15 mitochondrial ribosomal protein L15 2.49065
LYPLA1 lysophospholipase I 2.49065
RGS20 regulator of G-protein signaling 20 2.49065
LOC100287846 patched 1 pseudogene 2.41451
MCM4 minichromosome maintenance complex component 4 2.41451
PRKDC protein kinase, DNA-activated, catalytic polypeptide 2.41451
CEBPD CCAAT/enhancer binding protein (C/EBP), delta 2.41451
MROH5 maestro heat-like repeat family member 5 2.36889
PTP4A3 protein tyrosine phosphatase type IVA, member 3 2.36889
LACTB2 lactamase, beta 2 2.35236
LOC286190 2.35236
GPR20 G protein-coupled receptor 20 2.35236
XKR9 XK, Kell blood group complex subunit-related family, member 9 2.35236
NCOA2 nuclear receptor coactivator 2 2.35236
TRAM1 translocation associated membrane protein 1 2.35236
MSC musculin 2.3178
STAU2-AS1 STAU2 antisense RNA 1 2.3178
RDH10 retinol dehydrogenase 10 (all-trans) 2.3178
RPL7 ribosomal protein L7 2.3178
EYA1 EYA transcriptional coactivator and phosphatase 1 2.3178
STAU2 staufen double-stranded RNA binding protein 2 2.3178
SLC45A4 solute carrier family 45, member 4 2.30944
KCNB2 potassium channel, voltage gated Shab related subfamily B, member 2 2.30944
LOC100130301 2.30944
CHRAC1 chromatin accessibility complex 1 2.25904
DENND3 DENN/MADD domain containing 3 2.25904
AGO2 argonaute RISC catalytic component 2 2.24845
KCNK9 potassium channel, two pore domain subfamily K, member 9 2.24139
TRAPPC9 trafficking protein particle complex 9 2.2355
PTK2 protein tyrosine kinase 2 2.23324
COL22A1 collagen, type XXII, alpha 1 2.22917
FAM135B family with sequence similarity 135, member B 2.22633
GSDMC gasdermin C 2.18778
CCDC26 CCDC26 long non-coding RNA 2.16091
LINC00861 long intergenic non-protein coding RNA 861 2.15967
FAM84B family with sequence similarity 84, member B 2.15847
UBE2V2 ubiquitin-conjugating enzyme E2 variant 2 2.08712
EFCAB1 EF-hand calcium binding domain 1 2.08712
PCAT1 prostate cancer associated transcript 1 (non-protein coding) 2.08634
C8ORF22 chromosome 8 open reading frame 22 2.08021
SNAI2 snail family zinc finger 2 2.07776
MIR1206 microRNA 1206 2.07612
LOC100132891 2.0731
MIR1208 microRNA 1208 2.07136
MIR1205 microRNA 1205 2.07136
MIR1207 microRNA 1207 2.07136
TMEM75 transmembrane protein 75 2.06401
CCAT1 colon cancer associated transcript 1 (non-protein coding) 2.0614
POU5F1B POU class 5 homeobox 1B 2.05836
HPYR1 Helicobacter pylori responsive 1 (non-protein coding) 2.05635
LRRC6 leucine rich repeat containing 6 2.0557
PHF20L1 PHD finger protein 20-like 1 2.05441
TMEM71 transmembrane protein 71 2.05422
TG thyroglobulin 2.054
KCNQ3 potassium channel, voltage gated KQT-like subfamily Q, member 3 2.054
MIR1204 microRNA 1204 2.04661
PVT1 Pvt1 oncogene (non-protein coding) 2.04585

low copy number

Symbol Name Standardized Value
DEFB4A defensin, beta 4A -2.81412
FAM90A10P putative protein FAM90A10 -2.80826
FAM90A7P putative protein FAM90A7 -2.80826
DEFB107B defensin, beta 107B -2.80826
SPAG11A sperm associated antigen 11A -2.80826
DEFB107A defensin, beta 107A -2.80439
DEFB105A defensin, beta 105A -2.8018
ZNF705B zinc finger protein 705B -2.79933
SPAG11B sperm associated antigen 11B -2.79198
DEFB106A defensin, beta 106A -2.79198
DEFB104B defensin, beta 104B -2.79198
DEFB4B defensin, beta 4B -2.79198
DEFB103A defensin, beta 103A -2.78913
HCG4B HLA complex group 4B (non-protein coding) -2.75184