Omeprazole (sodium)_RKO Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Omeprazole (sodium) perturbation in RKO cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Omeprazole (sodium)_RKO drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
DLC1 DLC1 Rho GTPase activating protein 0.0456394
TTR transthyretin 0.027494
KMT2E lysine (K)-specific methyltransferase 2E 0.0261966
ELL2 elongation factor, RNA polymerase II, 2 0.0186633
TRIO trio Rho guanine nucleotide exchange factor 0.0178975
SETD5 SET domain containing 5 0.0170919
ZNF292 zinc finger protein 292 0.0158875
AKAP9 A kinase (PRKA) anchor protein 9 0.0145157
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.0134994
OSBPL8 oxysterol binding protein-like 8 0.0134159
PIAS2 protein inhibitor of activated STAT, 2 0.0131988
WDR43 WD repeat domain 43 0.013196
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0129442
NUP58 nucleoporin 58 0.0127211
ARHGEF28 Rho guanine nucleotide exchange factor (GEF) 28 0.0122808
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0121917
FOXJ3 forkhead box J3 0.0119094
FMNL2 formin-like 2 0.0106801
ITPR3 inositol 1,4,5-trisphosphate receptor, type 3 0.0106493
NCKAP1 NCK-associated protein 1 0.0105407
KMT2C lysine (K)-specific methyltransferase 2C 0.0104858
PSME4 proteasome (prosome, macropain) activator subunit 4 0.0104605
KDM7A lysine (K)-specific demethylase 7A 0.0102062
C1ORF52 chromosome 1 open reading frame 52 0.0100185
LPP LIM domain containing preferred translocation partner in lipoma 0.00983293
FRMD4A FERM domain containing 4A 0.00977809
EPB41L2 erythrocyte membrane protein band 4.1-like 2 0.00965196
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.00956423
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.00955426
RAD51B RAD51 paralog B 0.00941168
BHLHE40 basic helix-loop-helix family, member e40 0.00916589
RAD23B RAD23 homolog B (S. cerevisiae) 0.00902126
CHD1 chromodomain helicase DNA binding protein 1 0.0085776
ITCH itchy E3 ubiquitin protein ligase 0.00856533
PAPOLA poly(A) polymerase alpha 0.00851119
MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 0.00850536
ATP13A3 ATPase type 13A3 0.00825087
SEC24A SEC24 family member A 0.00821245
RNF145 ring finger protein 145 0.00807267
BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa 0.00781161
LCORL ligand dependent nuclear receptor corepressor-like 0.00771002
MXI1 MAX interactor 1, dimerization protein 0.00767758
BBX bobby sox homolog (Drosophila) 0.00767291
CALD1 caldesmon 1 0.00763332
CNOT4 CCR4-NOT transcription complex, subunit 4 0.00751325
ADAM9 ADAM metallopeptidase domain 9 0.00743221
FOXO3 forkhead box O3 0.00735847
KDM6A lysine (K)-specific demethylase 6A 0.00734512
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0073053
SBF2 SET binding factor 2 0.0072713
RLF rearranged L-myc fusion 0.00722132
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.00719888
USP3 ubiquitin specific peptidase 3 0.00718307
TPD52 tumor protein D52 0.0071036
CRACD capping protein inhibiting regulator of actin dynamics 0.00701548
MKI67 marker of proliferation Ki-67 0.00694305
GOLGA4 golgin A4 0.00685806
MTMR3 myotubularin related protein 3 0.00681652
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.00679286
KMT2A lysine (K)-specific methyltransferase 2A 0.00660419
FNIP1 folliculin interacting protein 1 0.00657984
CAPRIN1 cell cycle associated protein 1 0.0065709
TSC22D2 TSC22 domain family, member 2 0.0065565
CRKL v-crk avian sarcoma virus CT10 oncogene homolog-like 0.0065054
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.00650203
MKLN1 muskelin 1, intracellular mediator containing kelch motifs 0.00650086
ATN1 atrophin 1 0.00646306
BRWD3 bromodomain and WD repeat domain containing 3 0.00645773
SRRM1 serine/arginine repetitive matrix 1 0.00637262
RASA2 RAS p21 protein activator 2 0.00636521
TET2 tet methylcytosine dioxygenase 2 0.00635287
SFTPA2 surfactant protein A2 0.00633683
PPP1R3B protein phosphatase 1, regulatory subunit 3B 0.00632178
UBQLN1 ubiquilin 1 0.00626077
RAB18 RAB18, member RAS oncogene family 0.00625769
NSD3 nuclear receptor binding SET domain protein 3 0.0062567
CCNL1 cyclin L1 0.00620321
SRPK1 SRSF protein kinase 1 0.00620022
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 0.00618064
RIC1 RAB6A GEF complex partner 1 0.00617354
UBA6 ubiquitin-like modifier activating enzyme 6 0.00616498
BAZ2A bromodomain adjacent to zinc finger domain, 2A 0.00616312
FNDC3B fibronectin type III domain containing 3B 0.00615437
POU2F1 POU class 2 homeobox 1 0.00613286
HELZ helicase with zinc finger 0.00611061
PAWR PRKC, apoptosis, WT1, regulator 0.00607836
ANO6 anoctamin 6 0.00602387
TRIM33 tripartite motif containing 33 0.00600788
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.00600082
MEMO1 mediator of cell motility 1 0.00596761
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.00591862
HP1BP3 heterochromatin protein 1, binding protein 3 0.00591636
CKAP5 cytoskeleton associated protein 5 0.00591031
PDS5B PDS5 cohesin associated factor B 0.00589854
CENPF centromere protein F, 350/400kDa 0.00586978
YEATS2 YEATS domain containing 2 0.00585106
MED15 mediator complex subunit 15 0.00584634
PTBP2 polypyrimidine tract binding protein 2 0.00582337
SFXN1 sideroflexin 1 0.00580786
NCOR1 nuclear receptor corepressor 1 0.00580613

decreased expression

Symbol Name Standardized Value
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.104569
MT2A metallothionein 2A -0.0880051
UBC ubiquitin C -0.0745874
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0657424
AHNAK AHNAK nucleoprotein -0.0632065
RPS27A ribosomal protein S27a -0.0556401
RPL23 ribosomal protein L23 -0.0555265
ACTG1 actin gamma 1 -0.0552461
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0537408
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0511142
ENO1 enolase 1, (alpha) -0.0510729
LOC112694756 uncharaterized LOC112694756 -0.0501231
TMSB10 thymosin beta 10 -0.0481604
TPT1 tumor protein, translationally-controlled 1 -0.0475447
RPLP1 ribosomal protein, large, P1 -0.0473559
EXT1 exostosin glycosyltransferase 1 -0.046778
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0453664
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0447767
RPS6 ribosomal protein S6 -0.0437717
JUN jun proto-oncogene -0.0431394
RPL7A ribosomal protein L7a -0.0424615
RPS8 ribosomal protein S8 -0.0402758
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0368897
RPL12 ribosomal protein L12 -0.0367534
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.0363496
RPS3 ribosomal protein S3 -0.035938
MCL1 myeloid cell leukemia 1 -0.0357672
RPL37A ribosomal protein L37a -0.0355164
EIF4A1 eukaryotic translation initiation factor 4A1 -0.034996
RPS24 ribosomal protein S24 -0.0347041
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0346894
RPS12 ribosomal protein S12 -0.0342927
RPLP2 ribosomal protein, large, P2 -0.0341189
RPL9 ribosomal protein L9 -0.0338122
RPL30 ribosomal protein L30 -0.0336161
RPL8 ribosomal protein L8 -0.0335707
RPL35A ribosomal protein L35a -0.0328008
RPL7 ribosomal protein L7 -0.0326824
RPS19 ribosomal protein S19 -0.0325099
PKM pyruvate kinase, muscle -0.0322985
IFI16 interferon, gamma-inducible protein 16 -0.0319804
PTMA prothymosin, alpha -0.0319221
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0308353
RPS21 ribosomal protein S21 -0.0307319
SET SET nuclear proto-oncogene -0.0307258
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.0294815
RPL26 ribosomal protein L26 -0.0293733
ARHGAP22 Rho GTPase activating protein 22 -0.0283798
EEF2 eukaryotic translation elongation factor 2 -0.0283547
LAMB3 laminin, beta 3 -0.0276631
TPM4 tropomyosin 4 -0.0275492
PCBP2 poly(rC) binding protein 2 -0.0270013
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0263915
RPL19 ribosomal protein L19 -0.0256451
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0245934
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0245623
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0235363
EEF1G eukaryotic translation elongation factor 1 gamma -0.0231785
RPL35 ribosomal protein L35 -0.0231043
RPS29 ribosomal protein S29 -0.0230557
PRRC2B proline-rich coiled-coil 2B -0.0229589
TM4SF1 transmembrane 4 L six family member 1 -0.0229236
RPS13 ribosomal protein S13 -0.0228941
RPL34 ribosomal protein L34 -0.0228031
RPL31 ribosomal protein L31 -0.0226253
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0219307
NAP1L1 nucleosome assembly protein 1-like 1 -0.0211157
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 -0.0210006
G0S2 G0/G1 switch 2 -0.0206977
TIMP1 TIMP metallopeptidase inhibitor 1 -0.0206954
RPS4X ribosomal protein S4, X-linked -0.0201451
TOP1 topoisomerase (DNA) I -0.0201016
RPS11 ribosomal protein S11 -0.0200111
S100A6 S100 calcium binding protein A6 -0.0199689
RPS25 ribosomal protein S25 -0.0198342
RBM25 RNA binding motif protein 25 -0.0197946
RPL5 ribosomal protein L5 -0.0197931
FTL ferritin, light polypeptide -0.019607
RPS23 ribosomal protein S23 -0.0196049
HSPA9 heat shock 70kDa protein 9 (mortalin) -0.0195907
RPL32 ribosomal protein L32 -0.0194287
RPS16 ribosomal protein S16 -0.0193786
VPS13B vacuolar protein sorting 13 homolog B (yeast) -0.0193205
SFPQ splicing factor proline/glutamine-rich -0.0192966
RPL28 ribosomal protein L28 -0.0191163
POTEF POTE ankyrin domain family, member F -0.0190993
UPP1 uridine phosphorylase 1 -0.0190446
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.01897
RPS15 ribosomal protein S15 -0.0189049
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 -0.0188052
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle -0.0187631
RPS17 ribosomal protein S17 -0.0182768
MTDH metadherin -0.0182412
RPL11 ribosomal protein L11 -0.0181697
RPLP0 ribosomal protein, large, P0 -0.0181389
RPL36A ribosomal protein L36a -0.0180798
EEF1D eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) -0.0179955
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0178789
RPS5 ribosomal protein S5 -0.0175908
IFI6 interferon, alpha-inducible protein 6 -0.0173348