PCI-38 Gene Set
Genes
26 genes with high or low copy number in PCI-38 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
high copy number
| Symbol |
Name |
Standardized Value |
|
MSRB3
|
methionine sulfoxide reductase B3
|
2.64759
|
|
RAB3IP
|
RAB3A interacting protein
|
2.49065
|
|
BEST3
|
bestrophin 3
|
2.49065
|
|
MIR3913-1
|
microRNA 3913-1
|
2.44392
|
|
CCT2
|
chaperonin containing TCP1, subunit 2 (beta)
|
2.44392
|
|
MIR3913-2
|
microRNA 3913-2
|
2.44392
|
|
LRRC10
|
leucine rich repeat containing 10
|
2.44392
|
|
FRS2
|
fibroblast growth factor receptor substrate 2
|
2.39327
|
|
SHANK2-AS3
|
SHANK2 antisense RNA 3
|
2.22291
|
|
MIR3664
|
microRNA 3664
|
2.22291
|
|
FADD
|
Fas (TNFRSF6)-associated via death domain
|
2.16564
|
|
MIR548K
|
microRNA 548k
|
2.16564
|
|
PPFIA1
|
protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
|
2.16459
|
|
CTTN
|
cortactin
|
2.16307
|
|
ANO1
|
anoctamin 1, calcium activated chloride channel
|
2.16307
|
|
SHANK2-AS1
|
SHANK2 antisense RNA 1
|
2.05422
|
|
SHANK2
|
SH3 and multiple ankyrin repeat domains 2
|
2.04969
|
low copy number
| Symbol |
Name |
Standardized Value |
|
CHEK2P2
|
checkpoint kinase 2 pseudogene 2
|
-2.89586
|
|
CSMD1
|
CUB and Sushi multiple domains 1
|
-2.88947
|
|
GOLGA6L6
|
golgin A6 family-like 6
|
-2.86179
|
|
HERC2P7
|
hect domain and RLD 2 pseudogene 7
|
-2.86179
|
|
GOLGA8CP
|
golgin A8 family, member C, pseudogene
|
-2.86179
|
|
NBEAP1
|
neurobeachin pseudogene 1
|
-2.8542
|
|
NF1P2
|
neurofibromin 1 pseudogene 2
|
-2.8542
|
|
POTEB
|
POTE ankyrin domain family, member B
|
-2.8542
|
|
HERC2P3
|
hect domain and RLD 2 pseudogene 3
|
-2.84875
|
