Palmatine (chloride)_C32 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Palmatine (chloride) perturbation in C32 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Palmatine (chloride)_C32 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 0.101698
GPC6 glypican 6 0.0970827
TIMP3 TIMP metallopeptidase inhibitor 3 0.0863078
PHC2 polyhomeotic homolog 2 (Drosophila) 0.0847108
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0804294
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 0.0791293
FMN1 formin 1 0.0718098
APLP2 amyloid beta (A4) precursor-like protein 2 0.0715047
FN1 fibronectin 1 0.0704456
NPAS2 neuronal PAS domain protein 2 0.0665153
ATXN1 ataxin 1 0.0625778
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0610302
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.058573
EXOC4 exocyst complex component 4 0.05482
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0537743
TLE4 transducin-like enhancer of split 4 0.0519129
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.0512344
IFI16 interferon, gamma-inducible protein 16 0.0512331
ACTN1 actinin, alpha 1 0.0486167
MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 0.0476648
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 0.0465325
DST dystonin 0.0465222
LRMDA leucine rich melanocyte differentiation associated 0.0448786
CEMIP2 cell migration inducing hyaluronidase 2 0.0441488
WWTR1 WW domain containing transcription regulator 1 0.0438189
PLAT plasminogen activator, tissue 0.0434335
ZYX zyxin 0.0428567
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 0.0420747
MCL1 myeloid cell leukemia 1 0.0406149
SAMD4A sterile alpha motif domain containing 4A 0.0400848
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0395016
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0394803
FOS FBJ murine osteosarcoma viral oncogene homolog 0.0391106
FRMD4A FERM domain containing 4A 0.0389541
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0384193
SOX13 SRY (sex determining region Y)-box 13 0.0382481
RAD51B RAD51 paralog B 0.038119
PDLIM5 PDZ and LIM domain 5 0.0378764
ZSWIM6 zinc finger, SWIM-type containing 6 0.036883
CPED1 cadherin-like and PC-esterase domain containing 1 0.034682
TPM4 tropomyosin 4 0.0346497
INTS6 integrator complex subunit 6 0.034385
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0343072
RCAN1 regulator of calcineurin 1 0.0341544
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0340261
BZW2 basic leucine zipper and W2 domains 2 0.0335661
PPFIA4 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 0.0329593
VIM vimentin 0.032396
CLIC4 chloride intracellular channel 4 0.0323854
MYO1E myosin IE 0.0320575
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0313981
BRD2 bromodomain containing 2 0.029969
SQSTM1 sequestosome 1 0.0294816
LEF1 lymphoid enhancer-binding factor 1 0.0293756
MYH9 myosin, heavy chain 9, non-muscle 0.028904
ANK2 ankyrin 2, neuronal 0.0285041
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 0.0284425
SFTPA2 surfactant protein A2 0.0282349
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0278422
IVNS1ABP influenza virus NS1A binding protein 0.0276671
SMYD3 SET and MYND domain containing 3 0.0273137
IGFBP3 insulin-like growth factor binding protein 3 0.0272445
EFCAB13 EF-hand calcium binding domain 13 0.0271741
SLC9A1 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 0.0271407
MCTP1 multiple C2 domains, transmembrane 1 0.026734
IFI6 interferon, alpha-inducible protein 6 0.026725
SHISA5 shisa family member 5 0.0266514
VCL vinculin 0.0265842
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.0262509
POTEF POTE ankyrin domain family, member F 0.0261217
UTRN utrophin 0.0257531
MACF1 microtubule-actin crosslinking factor 1 0.0254944
SETBP1 SET binding protein 1 0.0254208
ADM adrenomedullin 0.0249691
LDHA lactate dehydrogenase A 0.0245388
IFRD1 interferon-related developmental regulator 1 0.0244638
AKAP9 A kinase (PRKA) anchor protein 9 0.0243169
PAX3 paired box 3 0.0240916
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 0.0237831
WNK1 WNK lysine deficient protein kinase 1 0.0237826
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0237696
SYNM synemin, intermediate filament protein 0.0237328
MITF microphthalmia-associated transcription factor 0.0236021
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 0.0235513
EXOC6B exocyst complex component 6B 0.0234532
GAS7 growth arrest-specific 7 0.0232635
YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma 0.0232591
CYTH3 cytohesin 3 0.0231274
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0230726
TSC22D1 TSC22 domain family, member 1 0.0227394
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.022709
TPR translocated promoter region, nuclear basket protein 0.022406
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 0.0223578
MACROD2 MACRO domain containing 2 0.0221913
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.022006
PI15 peptidase inhibitor 15 0.0219801
BCAS3 breast carcinoma amplified sequence 3 0.0219462
FERMT2 fermitin family member 2 0.0219349
CEMIP cell migration inducing protein, hyaluronan binding 0.0219312
BPTF bromodomain PHD finger transcription factor 0.02177

decreased expression

Symbol Name Standardized Value
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.111292
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.109394
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0965179
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0936661
VGF VGF nerve growth factor inducible -0.0924642
NAMPT nicotinamide phosphoribosyltransferase -0.0885574
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0883864
TMSB10 thymosin beta 10 -0.0736943
CENPF centromere protein F, 350/400kDa -0.0722941
KMT2E lysine (K)-specific methyltransferase 2E -0.0722261
AKAP12 A kinase (PRKA) anchor protein 12 -0.0717954
TNFRSF19 tumor necrosis factor receptor superfamily, member 19 -0.0704489
ZNF292 zinc finger protein 292 -0.069842
IGFBP5 insulin-like growth factor binding protein 5 -0.0690184
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0685753
PTTG1IP pituitary tumor-transforming 1 interacting protein -0.0664923
NPC1 Niemann-Pick disease, type C1 -0.063538
CDC73 cell division cycle 73 -0.0611308
GOLGA4 golgin A4 -0.0572581
KMT2C lysine (K)-specific methyltransferase 2C -0.0570533
NDRG1 N-myc downstream regulated 1 -0.0558945
CHSY1 chondroitin sulfate synthase 1 -0.0549073
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.0545252
WDR45B WD repeat domain 45B -0.0535932
PAN3 PAN3 poly(A) specific ribonuclease subunit -0.0524801
TMEM123 transmembrane protein 123 -0.0524452
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0524388
PDIA3 protein disulfide isomerase family A, member 3 -0.0522659
RUNX1 runt-related transcription factor 1 -0.0521743
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) -0.0516111
PGK1 phosphoglycerate kinase 1 -0.0511444
PDIA4 protein disulfide isomerase family A, member 4 -0.0502633
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 -0.0498936
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0496695
CPEB2 cytoplasmic polyadenylation element binding protein 2 -0.0490128
NAV2 neuron navigator 2 -0.0471777
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0436832
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.042253
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0413915
NBAS neuroblastoma amplified sequence -0.0401027
SRPK2 SRSF protein kinase 2 -0.0390932
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa -0.0389528
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0386878
PHF21A PHD finger protein 21A -0.0386081
COL19A1 collagen, type XIX, alpha 1 -0.0384685
MTPN myotrophin -0.0377684
TAGLN2 transgelin 2 -0.0373965
ESYT2 extended synaptotagmin-like protein 2 -0.0370907
SCFD2 sec1 family domain containing 2 -0.0367756
POM121 POM121 transmembrane nucleoporin -0.0366844
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0365325
TPD52 tumor protein D52 -0.0353573
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0353215
CNOT2 CCR4-NOT transcription complex, subunit 2 -0.035291
CDK14 cyclin-dependent kinase 14 -0.0346734
FOXJ3 forkhead box J3 -0.0342007
WSB1 WD repeat and SOCS box containing 1 -0.0331862
FYN FYN proto-oncogene, Src family tyrosine kinase -0.0331715
RHEB Ras homolog enriched in brain -0.0326987
GTF2I general transcription factor IIi -0.0326858
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0323092
EGLN1 egl-9 family hypoxia-inducible factor 1 -0.0319384
MT1X metallothionein 1X -0.031866
HELZ helicase with zinc finger -0.0318072
GNAS GNAS complex locus -0.0317944
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0316706
RBM33 RNA binding motif protein 33 -0.0315503
COG5 component of oligomeric golgi complex 5 -0.0313431
ZC3H11A zinc finger CCCH-type containing 11A -0.0313072
AHNAK AHNAK nucleoprotein -0.0309184
EHBP1 EH domain binding protein 1 -0.030567
PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) -0.0303496
MAP3K2 mitogen-activated protein kinase kinase kinase 2 -0.0298779
MKI67 marker of proliferation Ki-67 -0.029708
CTSD cathepsin D -0.0296605
RNF145 ring finger protein 145 -0.029608
TAS2R14 taste receptor, type 2, member 14 -0.0290731
NPEPPS aminopeptidase puromycin sensitive -0.0288987
CALD1 caldesmon 1 -0.0287973
NAV3 neuron navigator 3 -0.0287262
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0276037
OSMR oncostatin M receptor -0.0274851
UBE2D3 ubiquitin-conjugating enzyme E2D 3 -0.0272518
AHR aryl hydrocarbon receptor -0.026992
IER3 immediate early response 3 -0.0269634
BHLHE40 basic helix-loop-helix family, member e40 -0.0269012
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha -0.0268773
TNPO3 transportin 3 -0.0265306
ARHGAP5 Rho GTPase activating protein 5 -0.0263566
CALU calumenin -0.0263491
SSH1 slingshot protein phosphatase 1 -0.0263407
INSIG1 insulin induced gene 1 -0.0262398
BIRC2 baculoviral IAP repeat containing 2 -0.0260896
INSIG2 insulin induced gene 2 -0.0259741
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 -0.0258984
SAMTOR S-adenosylmethionine sensor upstream of mTORC1 -0.0258464
MEF2A myocyte enhancer factor 2A -0.0258243
HMCN1 hemicentin 1 -0.025809
SBF2 SET binding factor 2 -0.0257903
CTDSPL2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 -0.0256718