Pemigatinib_HepG2/C3A Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Pemigatinib perturbation in HepG2/C3A cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Pemigatinib_HepG2/C3A drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
IGF2 insulin-like growth factor 2 0.242245
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 0.165813
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.121469
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) 0.11521
AKAP12 A kinase (PRKA) anchor protein 12 0.111184
ERRFI1 ERBB receptor feedback inhibitor 1 0.110961
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0999927
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0975105
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0956311
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0916177
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0911478
SVIL supervillin 0.0854712
SAMD4A sterile alpha motif domain containing 4A 0.0827168
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.079071
FNDC3B fibronectin type III domain containing 3B 0.070865
DTNA dystrobrevin, alpha 0.068283
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0655878
TRIO trio Rho guanine nucleotide exchange factor 0.0646739
AHSG alpha-2-HS-glycoprotein 0.0611875
GRB10 growth factor receptor-bound protein 10 0.0603232
EIF1 eukaryotic translation initiation factor 1 0.0597682
ATXN1 ataxin 1 0.059037
CRY1 cryptochrome circadian clock 1 0.0574054
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0572772
GPC3 glypican 3 0.0569666
CLIC4 chloride intracellular channel 4 0.0555847
MACF1 microtubule-actin crosslinking factor 1 0.0542932
KIF13A kinesin family member 13A 0.0521557
PDE8A phosphodiesterase 8A 0.0517166
EPAS1 endothelial PAS domain protein 1 0.0506777
ITGAV integrin, alpha V 0.0498927
FBXO42 F-box protein 42 0.0468644
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 0.0465726
LCOR ligand dependent nuclear receptor corepressor 0.0462848
HSPH1 heat shock 105kDa/110kDa protein 1 0.0460285
MED13L mediator complex subunit 13-like 0.0455124
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0447148
ESYT2 extended synaptotagmin-like protein 2 0.0444782
PSME4 proteasome (prosome, macropain) activator subunit 4 0.0444131
LDHA lactate dehydrogenase A 0.0442659
AFDN afadin, adherens junction formation factor 0.0439846
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0436128
MYO1B myosin IB 0.0435771
SOD2 superoxide dismutase 2, mitochondrial 0.0425028
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0424029
GMDS GDP-mannose 4,6-dehydratase 0.0422531
IGFBP1 insulin-like growth factor binding protein 1 0.0419451
EPS8 epidermal growth factor receptor pathway substrate 8 0.0405561
IQSEC1 IQ motif and Sec7 domain 1 0.0401848
ZFAND3 zinc finger, AN1-type domain 3 0.0397874
KDM3A lysine (K)-specific demethylase 3A 0.0394368
LPIN2 lipin 2 0.0381784
G3BP1 GTPase activating protein (SH3 domain) binding protein 1 0.0381739
FXR1 fragile X mental retardation, autosomal homolog 1 0.0377536
UBQLN1 ubiquilin 1 0.0376967
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0376932
RAB10 RAB10, member RAS oncogene family 0.0371258
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 0.0371231
TOP1 topoisomerase (DNA) I 0.0362629
SH3RF1 SH3 domain containing ring finger 1 0.035802
FAM13A family with sequence similarity 13, member A 0.0357953
NAP1L1 nucleosome assembly protein 1-like 1 0.0355276
PKP4 plakophilin 4 0.0350341
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0349701
KIF5B kinesin family member 5B 0.0344948
GOLGA4 golgin A4 0.033955
ARHGAP12 Rho GTPase activating protein 12 0.0338502
PUM2 pumilio RNA-binding family member 2 0.033834
FOXP1 forkhead box P1 0.0331062
RAB3GAP1 RAB3 GTPase activating protein subunit 1 (catalytic) 0.0330269
OSBPL8 oxysterol binding protein-like 8 0.0329799
LPP LIM domain containing preferred translocation partner in lipoma 0.0328948
SORBS1 sorbin and SH3 domain containing 1 0.0327047
DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1 0.0320699
BSG basigin (Ok blood group) 0.0319679
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0316842
PPP6R3 protein phosphatase 6, regulatory subunit 3 0.0315106
EZR ezrin 0.0313705
GOLM2 golgi membrane protein 2 0.0313341
SCAF8 SR-related CTD-associated factor 8 0.0308398
QKI QKI, KH domain containing, RNA binding 0.0306558
OLA1 Obg-like ATPase 1 0.0306041
CCT4 chaperonin containing TCP1, subunit 4 (delta) 0.03053
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0304193
TRA2A transformer 2 alpha homolog (Drosophila) 0.0302087
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0297214
EPB41L2 erythrocyte membrane protein band 4.1-like 2 0.0294447
MAP3K2 mitogen-activated protein kinase kinase kinase 2 0.0292973
LOC112694756 uncharaterized LOC112694756 0.0292563
ELL2 elongation factor, RNA polymerase II, 2 0.0291818
SEC31A SEC31 homolog A (S. cerevisiae) 0.0288863
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0288837
TBC1D22A TBC1 domain family, member 22A 0.0287953
HSPA1A heat shock 70kDa protein 1A 0.0287327
EIF5B eukaryotic translation initiation factor 5B 0.0286129
PTBP2 polypyrimidine tract binding protein 2 0.0283225
UBE2D3 ubiquitin-conjugating enzyme E2D 3 0.0282966
GAREM1 GRB2 associated regulator of MAPK1 subtype 1 0.0281922
TOMM20 translocase of outer mitochondrial membrane 20 homolog (yeast) 0.0279962
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 0.0279348

decreased expression

Symbol Name Standardized Value
GPC6 glypican 6 -0.0960649
EHBP1 EH domain binding protein 1 -0.0837
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 -0.0745755
TPT1 tumor protein, translationally-controlled 1 -0.0725605
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 -0.0677885
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0625785
NPAS2 neuronal PAS domain protein 2 -0.0618883
NKD1 naked cuticle homolog 1 (Drosophila) -0.0612621
ROCK2 Rho-associated, coiled-coil containing protein kinase 2 -0.0596025
RRBP1 ribosome binding protein 1 -0.0573871
FN1 fibronectin 1 -0.0567538
TMEM123 transmembrane protein 123 -0.0546454
MAML2 mastermind-like 2 (Drosophila) -0.0539514
RPS27A ribosomal protein S27a -0.0488781
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 -0.0458782
VCL vinculin -0.045267
MCL1 myeloid cell leukemia 1 -0.0452095
FBF1 Fas (TNFRSF6) binding factor 1 -0.0444742
CP ceruloplasmin (ferroxidase) -0.043897
CAMK2N1 calcium/calmodulin-dependent protein kinase II inhibitor 1 -0.0435291
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) -0.0418026
ACSL4 acyl-CoA synthetase long-chain family member 4 -0.0391269
EML4 echinoderm microtubule associated protein like 4 -0.0386538
PTCHD4 patched domain containing 4 -0.038314
SLC38A2 solute carrier family 38, member 2 -0.0378739
APOB apolipoprotein B -0.0376873
TM4SF1 transmembrane 4 L six family member 1 -0.0372655
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0357279
APOA2 apolipoprotein A-II -0.0354964
ITGA1 integrin, alpha 1 -0.035422
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0344287
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) -0.0342306
ZBTB20 zinc finger and BTB domain containing 20 -0.0341981
SOX5 SRY (sex determining region Y)-box 5 -0.0337416
FTL ferritin, light polypeptide -0.0333916
FILIP1L filamin A interacting protein 1-like -0.0333452
PGK1 phosphoglycerate kinase 1 -0.0329994
TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 -0.0317369
ZMYND8 zinc finger, MYND-type containing 8 -0.0301514
UBE2D2 ubiquitin-conjugating enzyme E2D 2 -0.0301252
PEG10 paternally expressed 10 -0.0300774
ZHX2 zinc fingers and homeoboxes 2 -0.0294401
LRMDA leucine rich melanocyte differentiation associated -0.0287769
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0286118
COBLL1 cordon-bleu WH2 repeat protein-like 1 -0.0284029
MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 -0.0277742
TIMP1 TIMP metallopeptidase inhibitor 1 -0.0272131
OSMR oncostatin M receptor -0.0271855
NDRG1 N-myc downstream regulated 1 -0.0270547
GK glycerol kinase -0.0268891
BCL2L1 BCL2-like 1 -0.0268055
RPL9 ribosomal protein L9 -0.026571
TTC28 tetratricopeptide repeat domain 28 -0.0260534
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.0257901
TUT4 terminal uridylyl transferase 4 -0.0254595
NHSL1 NHS-like 1 -0.0254118
RNF213 ring finger protein 213 -0.0254106
MALT1 MALT1 paracaspase -0.0252283
STXBP5 syntaxin binding protein 5 (tomosyn) -0.0248063
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.024611
C3 complement component 3 -0.0244914
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) -0.0244802
ADGRG6 adhesion G protein-coupled receptor G6 -0.0244382
PRELID2 PRELI domain containing 2 -0.0243448
CFB complement factor B -0.0241005
ATM ATM serine/threonine kinase -0.0240848
BRAF B-Raf proto-oncogene, serine/threonine kinase -0.0237119
RIGI RNA sensor RIG-I -0.0236635
ZKSCAN1 zinc finger with KRAB and SCAN domains 1 -0.0236347
ECE1 endothelin converting enzyme 1 -0.0234829
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like -0.0233754
KLHL5 kelch-like family member 5 -0.0233002
UBXN4 UBX domain protein 4 -0.0232678
RPL31 ribosomal protein L31 -0.0231934
PTTG1IP pituitary tumor-transforming 1 interacting protein -0.0231551
SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 -0.0230628
ARF1 ADP-ribosylation factor 1 -0.0230111
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.023009
ZFHX3 zinc finger homeobox 3 -0.022876
RPL36 ribosomal protein L36 -0.0228145
DOK6 docking protein 6 -0.0225464
MSI2 musashi RNA-binding protein 2 -0.0225212
SPATS2L spermatogenesis associated, serine-rich 2-like -0.022481
ANKRD11 ankyrin repeat domain 11 -0.0221874
KDM3B lysine (K)-specific demethylase 3B -0.022032
CTNND1 catenin (cadherin-associated protein), delta 1 -0.0220095
AMBP alpha-1-microglobulin/bikunin precursor -0.021998
TMSB10 thymosin beta 10 -0.0212935
CDKAL1 CDK5 regulatory subunit associated protein 1-like 1 -0.0209561
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0208552
IST1 increased sodium tolerance 1 homolog (yeast) -0.0203159
UTRN utrophin -0.0203156
WNK1 WNK lysine deficient protein kinase 1 -0.0202954
DNAAF9 dynein axonemal assembly factor 9 -0.0202712
KPNB1 karyopherin (importin) beta 1 -0.0201858
SLC6A14 solute carrier family 6 (amino acid transporter), member 14 -0.0201428
C5 complement component 5 -0.0197899
SMAD3 SMAD family member 3 -0.0195535
RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase -0.0195311
TPM1 tropomyosin 1 (alpha) -0.0192405