Pemigatinib_LS 180 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Pemigatinib perturbation in LS 180 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Pemigatinib_LS 180 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 0.278366
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.147479
PTMA prothymosin, alpha 0.115796
GMDS GDP-mannose 4,6-dehydratase 0.112755
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.101496
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0848081
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.0676725
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0651423
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide 0.0649535
LDHA lactate dehydrogenase A 0.0614505
AFF1 AF4/FMR2 family, member 1 0.059671
GOLGA4 golgin A4 0.0575421
ALCAM activated leukocyte cell adhesion molecule 0.0545938
MED13 mediator complex subunit 13 0.0521761
EXT1 exostosin glycosyltransferase 1 0.0507682
TRIM2 tripartite motif containing 2 0.0499149
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0496018
FTL ferritin, light polypeptide 0.0492609
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.049007
EEF2 eukaryotic translation elongation factor 2 0.0486253
CLCN3 chloride channel, voltage-sensitive 3 0.0480341
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.047504
NEBL nebulette 0.0462585
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 0.0444539
PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 0.0442955
TXNIP thioredoxin interacting protein 0.043224
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0424723
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0417533
ITGA6 integrin, alpha 6 0.0413544
ZNRF3 zinc and ring finger 3 0.0404582
TTC3 tetratricopeptide repeat domain 3 0.0403704
PDZD8 PDZ domain containing 8 0.0402175
ZFAND3 zinc finger, AN1-type domain 3 0.0388012
SEC31A SEC31 homolog A (S. cerevisiae) 0.0383069
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 0.0381569
RHOA ras homolog family member A 0.0366576
FBXW7 F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase 0.0363108
ARHGAP21 Rho GTPase activating protein 21 0.0360242
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 0.0357366
PTEN phosphatase and tensin homolog 0.0354505
PIP5K1B phosphatidylinositol-4-phosphate 5-kinase, type I, beta 0.0345144
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0344202
FNDC3B fibronectin type III domain containing 3B 0.033862
MATR3 matrin 3 0.0337853
LOC112694756 uncharaterized LOC112694756 0.0332515
PTBP3 polypyrimidine tract binding protein 3 0.0329816
EPCAM epithelial cell adhesion molecule 0.0328967
IARS1 isoleucyl-tRNA synthetase 1 0.0326407
CADPS Ca++-dependent secretion activator 0.0323301
UBE2H ubiquitin-conjugating enzyme E2H 0.0319774
TGFBR2 transforming growth factor, beta receptor II (70/80kDa) 0.0312782
WHRN whirlin 0.0310847
ATXN1 ataxin 1 0.0309751
CD2AP CD2-associated protein 0.0307705
ADGRV1 adhesion G protein-coupled receptor V1 0.0306758
CENPF centromere protein F, 350/400kDa 0.0303175
LGR4 leucine-rich repeat containing G protein-coupled receptor 4 0.0301642
ARHGAP26 Rho GTPase activating protein 26 0.0300677
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0299248
PUM1 pumilio RNA-binding family member 1 0.0291528
TPI1 triosephosphate isomerase 1 0.0290046
BRD2 bromodomain containing 2 0.0285841
RNF145 ring finger protein 145 0.0281704
GPBP1L1 GC-rich promoter binding protein 1-like 1 0.0281207
ZSWIM6 zinc finger, SWIM-type containing 6 0.0279047
MBNL1 muscleblind-like splicing regulator 1 0.0278119
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.0275164
TUBA1B tubulin, alpha 1b 0.0272994
AKAP13 A kinase (PRKA) anchor protein 13 0.0271836
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0269414
ACTR3 ARP3 actin-related protein 3 homolog (yeast) 0.0264055
ETNK1 ethanolamine kinase 1 0.0263617
BTBD9 BTB (POZ) domain containing 9 0.0262083
GAREM1 GRB2 associated regulator of MAPK1 subtype 1 0.0261069
CRY1 cryptochrome circadian clock 1 0.0259997
RC3H1 ring finger and CCCH-type domains 1 0.025602
TGFBR3 transforming growth factor, beta receptor III 0.0254455
ANKRD11 ankyrin repeat domain 11 0.0253007
VTI1A vesicle transport through interaction with t-SNAREs 1A 0.0251219
SSR1 signal sequence receptor, alpha 0.0250846
EPHB2 EPH receptor B2 0.0250632
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0245947
TMEM123 transmembrane protein 123 0.0245933
EIF1 eukaryotic translation initiation factor 1 0.0242948
XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) 0.0242882
NBAS neuroblastoma amplified sequence 0.0241775
JUN jun proto-oncogene 0.0238077
MARCHF3 membrane associated ring-CH-type finger 3 0.0237002
PARD3B par-3 family cell polarity regulator beta 0.0234951
PRELID2 PRELI domain containing 2 0.0234198
PTGES3 prostaglandin E synthase 3 (cytosolic) 0.0232537
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0232027
MAP4 microtubule-associated protein 4 0.0228973
BIRC6 baculoviral IAP repeat containing 6 0.0227487
HNRNPM heterogeneous nuclear ribonucleoprotein M 0.0227167
LNPEP leucyl/cystinyl aminopeptidase 0.0226988
CNOT1 CCR4-NOT transcription complex, subunit 1 0.0226941
RLF rearranged L-myc fusion 0.0226421
NUP58 nucleoporin 58 0.0226278
CDK6 cyclin-dependent kinase 6 0.0226105

decreased expression

Symbol Name Standardized Value
NPSR1 neuropeptide S receptor 1 -0.182409
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.181241
VCL vinculin -0.0839098
TPT1 tumor protein, translationally-controlled 1 -0.0807396
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0774815
CEMIP cell migration inducing protein, hyaluronan binding -0.0687698
FLNB filamin B, beta -0.0657892
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0637024
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0587913
PTPRR protein tyrosine phosphatase, receptor type, R -0.0574058
PDLIM5 PDZ and LIM domain 5 -0.0511497
ANXA2 annexin A2 -0.0496307
LAMA4 laminin, alpha 4 -0.0489874
ANTXR2 anthrax toxin receptor 2 -0.0487583
PDE4D phosphodiesterase 4D, cAMP-specific -0.0487317
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0478955
GREB1L growth regulation by estrogen in breast cancer-like -0.0474578
TNS4 tensin 4 -0.0463012
TPM4 tropomyosin 4 -0.0459841
PTPRB protein tyrosine phosphatase, receptor type, B -0.0437341
MAML2 mastermind-like 2 (Drosophila) -0.0434996
SLC35F3 solute carrier family 35, member F3 -0.0426996
EGFR epidermal growth factor receptor -0.0408107
PALLD palladin, cytoskeletal associated protein -0.0399679
IER3 immediate early response 3 -0.0396821
B4GALNT3 beta-1,4-N-acetyl-galactosaminyl transferase 3 -0.0386169
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0374266
KIAA1217 KIAA1217 -0.0367712
CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5 -0.0365439
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0364766
KLK10 kallikrein-related peptidase 10 -0.0361952
LYZ lysozyme -0.035503
SLC38A1 solute carrier family 38, member 1 -0.0347494
LAMB3 laminin, beta 3 -0.0344351
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase -0.0324877
SPON1 spondin 1, extracellular matrix protein -0.032471
SH3D19 SH3 domain containing 19 -0.0314875
BACE2 beta-site APP-cleaving enzyme 2 -0.0304587
MUC5AC mucin 5AC, oligomeric mucus/gel-forming -0.0302382
HMGA1 high mobility group AT-hook 1 -0.0298981
TMSB10 thymosin beta 10 -0.0298027
NDRG1 N-myc downstream regulated 1 -0.0296203
ATXN7L1 ataxin 7-like 1 -0.0296164
BCL2L1 BCL2-like 1 -0.0295928
MPRIP myosin phosphatase Rho interacting protein -0.0295476
RPL9 ribosomal protein L9 -0.0290221
DKK1 dickkopf WNT signaling pathway inhibitor 1 -0.0286775
RNF217 ring finger protein 217 -0.0282119
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B -0.0277904
F3 coagulation factor III (thromboplastin, tissue factor) -0.0277294
S100P S100 calcium binding protein P -0.0270415
RPS8 ribosomal protein S8 -0.027038
GCC2 GRIP and coiled-coil domain containing 2 -0.0270075
TRIO trio Rho guanine nucleotide exchange factor -0.0268937
SOX4 SRY (sex determining region Y)-box 4 -0.02683
FHL2 four and a half LIM domains 2 -0.0265055
KRT18 keratin 18, type I -0.0261136
DOCK5 dedicator of cytokinesis 5 -0.025726
ICA1 islet cell autoantigen 1, 69kDa -0.0255309
AGR2 anterior gradient 2 -0.0250814
ACTG1 actin gamma 1 -0.0250084
AKAP12 A kinase (PRKA) anchor protein 12 -0.0249127
MICAL2 microtubule associated monooxygenase, calponin and LIM domain containing 2 -0.0246658
INTS6 integrator complex subunit 6 -0.0244351
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 -0.0240977
THSD4 thrombospondin, type I, domain containing 4 -0.0238282
SLCO1B3-SLCO1B7 SLCO1B3-SLCO1B7 readthrough -0.0235486
RPL12 ribosomal protein L12 -0.0234413
AHNAK AHNAK nucleoprotein -0.0234237
ANXA3 annexin A3 -0.0233525
TBC1D22A TBC1 domain family, member 22A -0.0231652
RPL35A ribosomal protein L35a -0.0231571
CNKSR3 CNKSR family member 3 -0.0231215
IRS2 insulin receptor substrate 2 -0.0227779
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0226347
ATP8A1 ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 -0.0223799
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0220996
RPS27A ribosomal protein S27a -0.0220665
CCND1 cyclin D1 -0.0220475
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase -0.0220224
MUC6 mucin 6, oligomeric mucus/gel-forming -0.0218421
ARHGAP29 Rho GTPase activating protein 29 -0.0217756
HDAC2 histone deacetylase 2 -0.0215619
APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 -0.0215232
ABR active BCR-related -0.0214639
FMNL2 formin-like 2 -0.0212325
RIN2 Ras and Rab interactor 2 -0.0210333
KRT8 keratin 8, type II -0.0208714
ISG15 ISG15 ubiquitin-like modifier -0.0207994
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) -0.0207536
MYH9 myosin, heavy chain 9, non-muscle -0.020509
ARHGAP6 Rho GTPase activating protein 6 -0.0203309
LPP LIM domain containing preferred translocation partner in lipoma -0.0199781
TNFAIP8 tumor necrosis factor, alpha-induced protein 8 -0.0198458
ITGB4 integrin, beta 4 -0.0197762
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 -0.0195598
TPM1 tropomyosin 1 (alpha) -0.019509
MYO1D myosin ID -0.019437
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0192107
PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 -0.0191528