Pemigatinib_SNU-423 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Pemigatinib perturbation in SNU-423 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Pemigatinib_SNU-423 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
IQCJ-SCHIP1 IQCJ-SCHIP1 readthrough 0.135068
PDE10A phosphodiesterase 10A 0.123793
GPC6 glypican 6 0.11769
HDAC9 histone deacetylase 9 0.113073
VCL vinculin 0.103125
ZSWIM6 zinc finger, SWIM-type containing 6 0.0958503
TRIO trio Rho guanine nucleotide exchange factor 0.0940838
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.0924523
VCAN versican 0.0672118
RAB7A RAB7A, member RAS oncogene family 0.0626758
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0604939
ANKRD1 ankyrin repeat domain 1 (cardiac muscle) 0.0591238
TENT5A terminal nucleotidyltransferase 5A 0.0543718
TMEM132D transmembrane protein 132D 0.0526786
FNIP1 folliculin interacting protein 1 0.0511358
RHOBTB3 Rho-related BTB domain containing 3 0.0501221
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.046742
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.04672
GRIN2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A 0.0466804
CDH13 cadherin 13 0.0456709
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0437859
FMN1 formin 1 0.0424923
NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) 0.0422737
BACE2 beta-site APP-cleaving enzyme 2 0.0420389
FER fer (fps/fes related) tyrosine kinase 0.0403728
SYNJ2 synaptojanin 2 0.0403448
PRELID2 PRELI domain containing 2 0.0363423
DTNA dystrobrevin, alpha 0.0349808
GPHN gephyrin 0.0343766
GPR176 G protein-coupled receptor 176 0.0342702
ERBIN erbb2 interacting protein 0.0338488
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.0330657
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.0322992
ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif, 14 0.0316914
CDKAL1 CDK5 regulatory subunit associated protein 1-like 1 0.0316796
PALLD palladin, cytoskeletal associated protein 0.0305033
EGR1 early growth response 1 0.0301795
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0296964
ELL2 elongation factor, RNA polymerase II, 2 0.0296767
WWOX WW domain containing oxidoreductase 0.0294685
MORF4L2 mortality factor 4 like 2 0.0292055
RPS6KA2 ribosomal protein S6 kinase, 90kDa, polypeptide 2 0.0287209
PPARD peroxisome proliferator-activated receptor delta 0.0283135
PCLO piccolo presynaptic cytomatrix protein 0.0281869
FRMD4A FERM domain containing 4A 0.0281575
GLS2 glutaminase 2 (liver, mitochondrial) 0.0279084
CTBP2 C-terminal binding protein 2 0.0277227
IRS2 insulin receptor substrate 2 0.0275327
HOMER1 homer scaffolding protein 1 0.0273127
SYNE1 spectrin repeat containing, nuclear envelope 1 0.0267432
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.026283
BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide 0.0261684
MYOF myoferlin 0.0260522
CPEB4 cytoplasmic polyadenylation element binding protein 4 0.0258858
KLHL29 kelch-like family member 29 0.0255146
FHIT fragile histidine triad 0.0254773
IARS1 isoleucyl-tRNA synthetase 1 0.0249839
FOSB FBJ murine osteosarcoma viral oncogene homolog B 0.0246537
KIAA1217 KIAA1217 0.0246033
LPP LIM domain containing preferred translocation partner in lipoma 0.0244415
ALCAM activated leukocyte cell adhesion molecule 0.0241263
CRY1 cryptochrome circadian clock 1 0.0240899
TUSC3 tumor suppressor candidate 3 0.0239208
ANO6 anoctamin 6 0.0238673
ABI3BP ABI family, member 3 (NESH) binding protein 0.0236789
HKDC1 hexokinase domain containing 1 0.0236781
PDLIM5 PDZ and LIM domain 5 0.023294
RFX3 regulatory factor X, 3 (influences HLA class II expression) 0.0231322
ATXN1 ataxin 1 0.0230164
MCTP1 multiple C2 domains, transmembrane 1 0.0229212
ZC3H12B zinc finger CCCH-type containing 12B 0.022858
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0228109
SLIT3 slit homolog 3 (Drosophila) 0.0225152
RUNX1 runt-related transcription factor 1 0.0224859
RPS6 ribosomal protein S6 0.0223709
UBE2H ubiquitin-conjugating enzyme E2H 0.0223543
PRKN parkin RBR E3 ubiquitin protein ligase 0.0223291
TENM2 teneurin transmembrane protein 2 0.0223027
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.022141
DUSP10 dual specificity phosphatase 10 0.0220945
NRXN3 neurexin 3 0.0220843
LYST lysosomal trafficking regulator 0.0220079
ESYT2 extended synaptotagmin-like protein 2 0.0219504
NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 0.0217561
ADGRB3 adhesion G protein-coupled receptor B3 0.0217445
LSAMP limbic system-associated membrane protein 0.0216969
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 0.0212376
CCNL1 cyclin L1 0.0208277
ARB2A ARB2 cotranscriptional regulator A 0.0206135
ASPH aspartate beta-hydroxylase 0.0205951
CORO1C coronin, actin binding protein, 1C 0.0204018
RFX2 regulatory factor X, 2 (influences HLA class II expression) 0.0203216
ZBTB38 zinc finger and BTB domain containing 38 0.0202275
SLC35F3 solute carrier family 35, member F3 0.0201864
FNDC3A fibronectin type III domain containing 3A 0.0199306
IER3 immediate early response 3 0.0199024
PCDH7 protocadherin 7 0.0198837
TRAM2 translocation associated membrane protein 2 0.019847
SFRP1 secreted frizzled-related protein 1 0.0197786
EPHA5 EPH receptor A5 0.0197622

decreased expression

Symbol Name Standardized Value
VIM vimentin -0.312346
TPT1 tumor protein, translationally-controlled 1 -0.0847673
EEF2 eukaryotic translation elongation factor 2 -0.0697085
PTMA prothymosin, alpha -0.0676845
HLA-E major histocompatibility complex, class I, E -0.0651075
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0641061
MYH9 myosin, heavy chain 9, non-muscle -0.0639013
AKAP12 A kinase (PRKA) anchor protein 12 -0.0628657
HLA-B major histocompatibility complex, class I, B -0.0624678
CD44 CD44 molecule (Indian blood group) -0.0577394
NAMPT nicotinamide phosphoribosyltransferase -0.0557315
CENPF centromere protein F, 350/400kDa -0.055445
GLIS3 GLIS family zinc finger 3 -0.0541608
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 -0.0539927
PGK1 phosphoglycerate kinase 1 -0.0513908
MT2A metallothionein 2A -0.0511878
OGA O-GlcNAcase -0.047922
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.047518
AHNAK AHNAK nucleoprotein -0.0460528
WSB1 WD repeat and SOCS box containing 1 -0.0458475
ANLN anillin, actin binding protein -0.0442755
STC1 stanniocalcin 1 -0.0440701
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0431788
RAI14 retinoic acid induced 14 -0.0426784
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0418786
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0400894
ATRX alpha thalassemia/mental retardation syndrome X-linked -0.0387449
VEGFA vascular endothelial growth factor A -0.0384265
THBS1 thrombospondin 1 -0.0381185
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0380851
CSDE1 cold shock domain containing E1, RNA-binding -0.0376142
KIF4A kinesin family member 4A -0.037283
NAP1L1 nucleosome assembly protein 1-like 1 -0.0367378
TPM4 tropomyosin 4 -0.0366032
SBF2 SET binding factor 2 -0.0363679
UBC ubiquitin C -0.0362395
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0356622
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0353891
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0345467
TMSB4X thymosin beta 4, X-linked -0.0340802
ENO1 enolase 1, (alpha) -0.0337025
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0327062
CKAP5 cytoskeleton associated protein 5 -0.0326536
WDFY1 WD repeat and FYVE domain containing 1 -0.0324846
MMP12 matrix metallopeptidase 12 -0.0324279
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0322919
DLG1 discs, large homolog 1 (Drosophila) -0.0320576
PTK2 protein tyrosine kinase 2 -0.0317746
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0316487
ZNF292 zinc finger protein 292 -0.0313351
SMC4 structural maintenance of chromosomes 4 -0.0310759
RPS3 ribosomal protein S3 -0.0309727
NDRG1 N-myc downstream regulated 1 -0.0308586
FLNB filamin B, beta -0.0308522
ZMYND8 zinc finger, MYND-type containing 8 -0.0306071
HMGA2 high mobility group AT-hook 2 -0.0305692
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0302485
NPEPPS aminopeptidase puromycin sensitive -0.0302354
TAPBP TAP binding protein (tapasin) -0.0298213
CNOT2 CCR4-NOT transcription complex, subunit 2 -0.0293305
KMT2E lysine (K)-specific methyltransferase 2E -0.0291672
FOXP1 forkhead box P1 -0.0290974
HMGA1 high mobility group AT-hook 1 -0.0288998
RPS27A ribosomal protein S27a -0.0287056
NRIP1 nuclear receptor interacting protein 1 -0.0285183
TMSB10 thymosin beta 10 -0.0285036
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 -0.0283054
APP amyloid beta (A4) precursor protein -0.0282693
RPL36A ribosomal protein L36a -0.0282079
IGFBP3 insulin-like growth factor binding protein 3 -0.028021
SEPTIN7 septin 7 -0.0279619
RAI1 retinoic acid induced 1 -0.0279334
RPL31 ribosomal protein L31 -0.0276789
TPX2 TPX2, microtubule-associated -0.0275721
LDHA lactate dehydrogenase A -0.0275648
PCBP2 poly(rC) binding protein 2 -0.0274447
RPL27A ribosomal protein L27a -0.0273612
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0272964
DIAPH3 diaphanous-related formin 3 -0.0271513
EEF1G eukaryotic translation elongation factor 1 gamma -0.0268915
HLA-A major histocompatibility complex, class I, A -0.0268033
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) -0.0266487
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0265451
SLC38A1 solute carrier family 38, member 1 -0.0265176
TOX2 TOX high mobility group box family member 2 -0.0264432
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0263026
TPR translocated promoter region, nuclear basket protein -0.0257209
ZFAND3 zinc finger, AN1-type domain 3 -0.0254366
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 -0.0253935
SDC4 syndecan 4 -0.0253409
RTN4 reticulon 4 -0.0251232
SET SET nuclear proto-oncogene -0.0248696
RBMX RNA binding motif protein, X-linked -0.0245524
TMEM123 transmembrane protein 123 -0.0244793
ACTG1 actin gamma 1 -0.0243582
RICTOR RPTOR independent companion of MTOR, complex 2 -0.0242968
AFDN afadin, adherens junction formation factor -0.0242085
ASXL1 additional sex combs like transcriptional regulator 1 -0.0239622
ENO2 enolase 2 (gamma, neuronal) -0.0239002
RPL9 ribosomal protein L9 -0.023828