Pentoxifylline_NCI-H661 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Pentoxifylline perturbation in NCI-H661 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Pentoxifylline_NCI-H661 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
COL3A1 collagen, type III, alpha 1 0.0811291
NTM neurotrimin 0.0762818
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0750286
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0732087
ANKRD33B ankyrin repeat domain 33B 0.0491393
RPLP1 ribosomal protein, large, P1 0.0472264
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0452188
PCLO piccolo presynaptic cytomatrix protein 0.0424842
RPS8 ribosomal protein S8 0.0424606
LRRC4C leucine rich repeat containing 4C 0.0364737
IRF2BP2 interferon regulatory factor 2 binding protein 2 0.0357697
RPS2 ribosomal protein S2 0.034951
TMSB10 thymosin beta 10 0.0339502
RPS16 ribosomal protein S16 0.0325484
RPL23 ribosomal protein L23 0.0323749
RBMS3 RNA binding motif, single stranded interacting protein 3 0.0322893
ERBB4 erb-b2 receptor tyrosine kinase 4 0.0318193
WSB1 WD repeat and SOCS box containing 1 0.0311105
RPS12 ribosomal protein S12 0.0310103
GPC3 glypican 3 0.0299839
RPLP0 ribosomal protein, large, P0 0.0297019
SAMD4A sterile alpha motif domain containing 4A 0.0285934
ADGRV1 adhesion G protein-coupled receptor V1 0.028466
MDK midkine (neurite growth-promoting factor 2) 0.0278044
LPIN2 lipin 2 0.0276469
GNAS GNAS complex locus 0.0268936
TPT1 tumor protein, translationally-controlled 1 0.0267699
ADGRL2 adhesion G protein-coupled receptor L2 0.0265224
PCDH7 protocadherin 7 0.0254717
SREBF2 sterol regulatory element binding transcription factor 2 0.0253311
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0248622
BHLHE40 basic helix-loop-helix family, member e40 0.0234536
NR2F1 nuclear receptor subfamily 2, group F, member 1 0.0231039
CTNNA3 catenin (cadherin-associated protein), alpha 3 0.0224614
HECTD1 HECT domain containing E3 ubiquitin protein ligase 1 0.0224379
CDH19 cadherin 19, type 2 0.0220748
FOXP2 forkhead box P2 0.0220583
RPL4 ribosomal protein L4 0.0220196
SUN1 Sad1 and UNC84 domain containing 1 0.0219725
VPS54 vacuolar protein sorting 54 homolog (S. cerevisiae) 0.0215895
AHNAK AHNAK nucleoprotein 0.0215554
HMCN1 hemicentin 1 0.0213972
SOX2 SRY (sex determining region Y)-box 2 0.0213169
CTNNA2 catenin (cadherin-associated protein), alpha 2 0.0209913
LOC112694756 uncharaterized LOC112694756 0.020872
EEF1G eukaryotic translation elongation factor 1 gamma 0.0205183
PRELID2 PRELI domain containing 2 0.0204841
FNDC3A fibronectin type III domain containing 3A 0.0204604
DOCK5 dedicator of cytokinesis 5 0.0203706
ATRX alpha thalassemia/mental retardation syndrome X-linked 0.0202629
GSE1 Gse1 coiled-coil protein 0.0201074
CAMTA1 calmodulin binding transcription activator 1 0.0200046
COL1A2 collagen, type I, alpha 2 0.0198209
SNAPC1 small nuclear RNA activating complex, polypeptide 1, 43kDa 0.0197739
ZNFX1 zinc finger, NFX1-type containing 1 0.0194903
RPS27A ribosomal protein S27a 0.0194791
FAM177A1 family with sequence similarity 177, member A1 0.0193665
IFIH1 interferon induced with helicase C domain 1 0.0192418
SFRP4 secreted frizzled-related protein 4 0.0187999
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0186136
NACA nascent polypeptide-associated complex alpha subunit 0.0183688
HIVEP1 human immunodeficiency virus type I enhancer binding protein 1 0.0183424
AFF4 AF4/FMR2 family, member 4 0.0183369
LRMDA leucine rich melanocyte differentiation associated 0.018243
LUZP2 leucine zipper protein 2 0.0181279
KCTD16 potassium channel tetramerization domain containing 16 0.0181266
RBM20 RNA binding motif protein 20 0.017943
MEF2C myocyte enhancer factor 2C 0.0178524
RPL30 ribosomal protein L30 0.0177737
ARHGEF4 Rho guanine nucleotide exchange factor (GEF) 4 0.0176534
ELF2 E74-like factor 2 (ets domain transcription factor) 0.0176289
SEC22A SEC22 vesicle trafficking protein homolog A (S. cerevisiae) 0.0176036
RPLP2 ribosomal protein, large, P2 0.0175612
MED12L mediator complex subunit 12-like 0.0174877
RPL35 ribosomal protein L35 0.0174194
MKI67 marker of proliferation Ki-67 0.0173908
RPS6 ribosomal protein S6 0.0173564
ABCF1 ATP-binding cassette, sub-family F (GCN20), member 1 0.0172308
ADGRG6 adhesion G protein-coupled receptor G6 0.0172048
RPL37 ribosomal protein L37 0.0171218
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 0.0170102
RAB31 RAB31, member RAS oncogene family 0.0169523
UPP1 uridine phosphorylase 1 0.0168849
ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein 0.0168057
SQSTM1 sequestosome 1 0.0168013
RPL9 ribosomal protein L9 0.0165835
NFE2L1 nuclear factor, erythroid 2-like 1 0.0165831
RPL26 ribosomal protein L26 0.0164984
TAS2R14 taste receptor, type 2, member 14 0.0164742
ISG15 ISG15 ubiquitin-like modifier 0.0162869
ZFP36 ZFP36 ring finger protein 0.0161868
RNF216 ring finger protein 216 0.0161732
SREBF1 sterol regulatory element binding transcription factor 1 0.0161303
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0160833
EHMT1 euchromatic histone-lysine N-methyltransferase 1 0.0159036
KDM2B lysine (K)-specific demethylase 2B 0.0158773
ENO1 enolase 1, (alpha) 0.0158749
SKIL SKI-like proto-oncogene 0.0157719
SIPA1L3 signal-induced proliferation-associated 1 like 3 0.0156857
RPS6KC1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 0.0155653

decreased expression

Symbol Name Standardized Value
TSC22D2 TSC22 domain family, member 2 -0.122332
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0772166
FNDC3B fibronectin type III domain containing 3B -0.0757453
PHIP pleckstrin homology domain interacting protein -0.0673901
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0642031
PPP1R12A protein phosphatase 1, regulatory subunit 12A -0.0635926
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha -0.0631091
ZNF292 zinc finger protein 292 -0.0626978
PGAP1 post-GPI attachment to proteins 1 -0.0598613
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0590707
PTMA prothymosin, alpha -0.0548432
CDC73 cell division cycle 73 -0.050258
EMP1 epithelial membrane protein 1 -0.0497559
FBXO11 F-box protein 11 -0.0497277
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0496528
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0487991
STRN3 striatin, calmodulin binding protein 3 -0.0461339
PFN1 profilin 1 -0.0457229
ENAH enabled homolog (Drosophila) -0.0439098
ZFAND3 zinc finger, AN1-type domain 3 -0.0435443
PEG10 paternally expressed 10 -0.0421961
CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) -0.0419892
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0406817
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0403576
LUC7L3 LUC7-like 3 (S. cerevisiae) -0.0401618
ITGAV integrin, alpha V -0.0399736
USP3 ubiquitin specific peptidase 3 -0.0398261
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0389167
SETD5 SET domain containing 5 -0.0386078
NOP58 NOP58 ribonucleoprotein -0.0385838
KMT2E lysine (K)-specific methyltransferase 2E -0.0371306
GOLGA4 golgin A4 -0.0370173
TRIO trio Rho guanine nucleotide exchange factor -0.0369085
TBC1D12 TBC1 domain family, member 12 -0.0360994
MTF2 metal response element binding transcription factor 2 -0.0358665
G2E3 G2/M-phase specific E3 ubiquitin protein ligase -0.0357951
MRPS30 mitochondrial ribosomal protein S30 -0.0350585
GALNTL6 polypeptide N-acetylgalactosaminyltransferase-like 6 -0.0349508
YES1 YES proto-oncogene 1, Src family tyrosine kinase -0.0348947
NCOR1 nuclear receptor corepressor 1 -0.0347097
MAP4 microtubule-associated protein 4 -0.0340024
ADAM9 ADAM metallopeptidase domain 9 -0.0338365
BCLAF1 BCL2-associated transcription factor 1 -0.0337032
PUM1 pumilio RNA-binding family member 1 -0.0326275
KDM2A lysine (K)-specific demethylase 2A -0.0325228
ADGRL3 adhesion G protein-coupled receptor L3 -0.0325156
FAM171B family with sequence similarity 171, member B -0.0324508
WAC WW domain containing adaptor with coiled-coil -0.0323303
ILF3 interleukin enhancer binding factor 3, 90kDa -0.0322344
RBM25 RNA binding motif protein 25 -0.0320904
SLC38A2 solute carrier family 38, member 2 -0.0317634
SHROOM3 shroom family member 3 -0.0317502
TAOK1 TAO kinase 1 -0.0316886
HMGA2 high mobility group AT-hook 2 -0.0316591
CSDE1 cold shock domain containing E1, RNA-binding -0.0315681
N4BP2L2 NEDD4 binding protein 2-like 2 -0.031488
PRR16 proline rich 16 -0.0314793
ZC3H15 zinc finger CCCH-type containing 15 -0.0311541
POTEF POTE ankyrin domain family, member F -0.0311181
PICALM phosphatidylinositol binding clathrin assembly protein -0.0306678
LRPPRC leucine-rich pentatricopeptide repeat containing -0.0300363
BIRC6 baculoviral IAP repeat containing 6 -0.0296454
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 -0.02963
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0290814
SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 -0.028469
PDIA3 protein disulfide isomerase family A, member 3 -0.0283986
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0283854
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.0283506
ARID4B AT rich interactive domain 4B (RBP1-like) -0.0283354
DHX9 DEAH (Asp-Glu-Ala-His) box helicase 9 -0.028233
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0279639
FXR1 fragile X mental retardation, autosomal homolog 1 -0.0277193
NIPBL Nipped-B homolog (Drosophila) -0.0274948
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.0273838
PPP4R1 protein phosphatase 4, regulatory subunit 1 -0.0273379
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0272844
SRP54 signal recognition particle 54kDa -0.0272757
CCNL1 cyclin L1 -0.0272338
RNF13 ring finger protein 13 -0.0271179
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0269672
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0268251
SLK STE20-like kinase -0.0268065
PDIA6 protein disulfide isomerase family A, member 6 -0.0267337
WDR43 WD repeat domain 43 -0.0267158
RDX radixin -0.0266554
PRKDC protein kinase, DNA-activated, catalytic polypeptide -0.0261957
ATP5F1B ATP synthase F1 subunit beta -0.0261444
PAPOLA poly(A) polymerase alpha -0.0258803
CNOT1 CCR4-NOT transcription complex, subunit 1 -0.0258276
MARCHF6 membrane associated ring-CH-type finger 6 -0.0257131
ARHGAP21 Rho GTPase activating protein 21 -0.0256924
ZNF638 zinc finger protein 638 -0.0253644
ACBD3 acyl-CoA binding domain containing 3 -0.0253581
USP34 ubiquitin specific peptidase 34 -0.025323
FAM168A family with sequence similarity 168, member A -0.0252923
SMC3 structural maintenance of chromosomes 3 -0.0252075
TTC3 tetratricopeptide repeat domain 3 -0.0250197
SRRM1 serine/arginine repetitive matrix 1 -0.0248491
TLK2 tousled-like kinase 2 -0.0247778
PDS5A PDS5 cohesin associated factor A -0.0247712