| Dataset | PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations |
| Category | transcriptomics |
| Type | gene perturbation |
| Description | KD perturbation targeting HNRNPM in LNCaP cell line (Study accession: SRP143499) (PerturbAtlas) |
| Similar Terms | |
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200 genes differentially expressed following the Perturb_11407_KD_HNRNPM_SRP143499 gene perturbation from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| DSG1 | desmoglein 1 | 20.0 |
| C18ORF8 | chromosome 18 open reading frame 8 | 20.0 |
| MIA3 | melanoma inhibitory activity family, member 3 | 20.0 |
| UBE2N | ubiquitin-conjugating enzyme E2N | 20.0 |
| COLCA2 | colorectal cancer associated 2 | 20.0 |
| C7ORF49 | chromosome 7 open reading frame 49 | 20.0 |
| GNB1L | guanine nucleotide binding protein (G protein), beta polypeptide 1-like | 20.0 |
| EMG1 | EMG1 N1-specific pseudouridine methyltransferase | 20.0 |
| NPB | neuropeptide B | 20.0 |
| ACSS3 | acyl-CoA synthetase short-chain family member 3 | 20.0 |
| COL5A1 | collagen, type V, alpha 1 | 19.699 |
| SYT4 | synaptotagmin IV | 16.8592 |
| C12ORF73 | chromosome 12 open reading frame 73 | 15.8578 |
| CDH4 | cadherin 4, type 1, R-cadherin (retinal) | 15.4248 |
| GNAI1 | guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 | 15.2728 |
| CRLF1 | cytokine receptor-like factor 1 | 15.0824 |
| TCP11L1 | t-complex 11, testis-specific-like 1 | 14.9748 |
| IDUA | iduronidase, alpha-L- | 14.3092 |
| TMEM63B | transmembrane protein 63B | 14.3003 |
| CENPP | centromere protein P | 13.468 |
| SIAH1 | siah E3 ubiquitin protein ligase 1 | 13.1425 |
| TBC1D16 | TBC1 domain family, member 16 | 13.0035 |
| MTERF4 | mitochondrial transcription termination factor 4 | 12.6059 |
| SKIV2L2 | superkiller viralicidic activity 2-like 2 (S. cerevisiae) | 12.3823 |
| ANKS1B | ankyrin repeat and sterile alpha motif domain containing 1B | 12.2722 |
| MMACHC | methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria | 12.2005 |
| ELF3 | E74-like factor 3 (ets domain transcription factor, epithelial-specific ) | 12.1186 |
| C5ORF45 | chromosome 5 open reading frame 45 | 11.8993 |
| ANKRD61 | ankyrin repeat domain 61 | 11.4243 |
| SH3D19 | SH3 domain containing 19 | 10.9957 |
| TBPL1 | TBP-like 1 | 10.8361 |
| PRH1 | proline-rich protein HaeIII subfamily 1 | 10.4829 |
| CLVS1 | clavesin 1 | 10.4829 |
| CDK2AP1 | cyclin-dependent kinase 2 associated protein 1 | 10.4046 |
| PTRH2 | peptidyl-tRNA hydrolase 2 | 10.1576 |
| ACSBG1 | acyl-CoA synthetase bubblegum family member 1 | 9.92037 |
| SLC4A4 | solute carrier family 4 (sodium bicarbonate cotransporter), member 4 | 9.89275 |
| CXORF36 | chromosome X open reading frame 36 | 9.83907 |
| CSNK1D | casein kinase 1, delta | 9.83491 |
| B3GALNT2 | beta-1,3-N-acetylgalactosaminyltransferase 2 | 9.51845 |
| OVCH2 | ovochymase 2 (gene/pseudogene) | 9.51845 |
| BEST1 | bestrophin 1 | 9.28855 |
| DNAJC24 | DnaJ (Hsp40) homolog, subfamily C, member 24 | 9.28498 |
| FAR2 | fatty acyl CoA reductase 2 | 9.16737 |
| GLIPR1 | GLI pathogenesis-related 1 | 8.88705 |
| TCP1 | t-complex 1 | 8.84664 |
| ATPIF1 | ATPase inhibitory factor 1 | 8.6014 |
| SNX22 | sorting nexin 22 | 8.38382 |
| FAM63A | family with sequence similarity 63, member A | 8.36569 |
| STAG3 | stromal antigen 3 | 8.06559 |
| SPATA21 | spermatogenesis associated 21 | 8.05672 |
| TRMT13 | tRNA methyltransferase 13 homolog (S. cerevisiae) | 8.05581 |
| DCAF17 | DDB1 and CUL4 associated factor 17 | 8.01475 |
| GPRC5B | G protein-coupled receptor, class C, group 5, member B | 8.00451 |
| ATG7 | autophagy related 7 | 7.84679 |
| SFT2D3 | SFT2 domain containing 3 | 7.5183 |
| SRR | serine racemase | 7.3523 |
| GLP1R | glucagon-like peptide 1 receptor | 7.26776 |
| C1ORF167 | chromosome 1 open reading frame 167 | 7.10689 |
| DOPEY1 | dopey family member 1 | 6.99625 |
| ATP6V1C2 | ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2 | 6.88934 |
| GRIN2C | glutamate receptor, ionotropic, N-methyl D-aspartate 2C | 6.69478 |
| ADAMTS1 | ADAM metallopeptidase with thrombospondin type 1 motif, 1 | 6.67327 |
| RAB6C | RAB6C, member RAS oncogene family | 6.66471 |
| NUP88 | nucleoporin 88kDa | 6.39743 |
| LRBA | LPS-responsive vesicle trafficking, beach and anchor containing | 6.32622 |
| MSH3 | mutS homolog 3 | 6.10797 |
| DNAJB7 | DnaJ (Hsp40) homolog, subfamily B, member 7 | 6.08931 |
| TNPO1 | transportin 1 | 5.88131 |
| SPC24 | SPC24, NDC80 kinetochore complex component | 5.8586 |
| TCHP | trichoplein, keratin filament binding | 5.72112 |
| ANAPC11 | anaphase promoting complex subunit 11 | 5.6321 |
| ARHGAP5 | Rho GTPase activating protein 5 | 5.6153 |
| FAM69A | family with sequence similarity 69, member A | 5.53589 |
| POLQ | polymerase (DNA directed), theta | 5.49851 |
| GLRX5 | glutaredoxin 5 | 5.49373 |
| NRDE2 | NRDE-2, necessary for RNA interference, domain containing | 5.46253 |
| IQCK | IQ motif containing K | 5.436 |
| FCHSD1 | FCH and double SH3 domains 1 | 5.32697 |
| CNTD1 | cyclin N-terminal domain containing 1 | 5.30557 |
| CNNM2 | cyclin and CBS domain divalent metal cation transport mediator 2 | 5.2868 |
| PLTP | phospholipid transfer protein | 5.16699 |
| FADS1 | fatty acid desaturase 1 | 5.15061 |
| VWA1 | von Willebrand factor A domain containing 1 | 5.14861 |
| RNPEP | arginyl aminopeptidase (aminopeptidase B) | 5.13054 |
| KIF9 | kinesin family member 9 | 5.10877 |
| CIRBP | cold inducible RNA binding protein | 5.09458 |
| MAST2 | microtubule associated serine/threonine kinase 2 | 5.04866 |
| AMD1 | adenosylmethionine decarboxylase 1 | 4.99916 |
| METTL5 | methyltransferase like 5 | 4.93846 |
| B3GNT4 | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 | 4.93721 |
| MROH1 | maestro heat-like repeat family member 1 | 4.87763 |
| PSMG4 | proteasome (prosome, macropain) assembly chaperone 4 | 4.84525 |
| COL4A3BP | collagen, type IV, alpha 3 (Goodpasture antigen) binding protein | 4.80392 |
| SLC7A6OS | solute carrier family 7, member 6 opposite strand | 4.79981 |
| LYRM5 | LYR motif containing 5 | 4.76977 |
| RASGRF2 | Ras protein-specific guanine nucleotide-releasing factor 2 | 4.76711 |
| DHX32 | DEAH (Asp-Glu-Ala-His) box polypeptide 32 | 4.72803 |
| WBSCR16 | Williams-Beuren syndrome chromosome region 16 | 4.70057 |
| FASN | fatty acid synthase | 4.62314 |
| Symbol | Name | Standardized Value |
|---|---|---|
| POLR3H | polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) | -20.0 |
| PAQR3 | progestin and adipoQ receptor family member III | -20.0 |
| ZNF135 | zinc finger protein 135 | -20.0 |
| DDX11 | DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 | -20.0 |
| THBS1 | thrombospondin 1 | -20.0 |
| SPATA1 | spermatogenesis associated 1 | -20.0 |
| WDR33 | WD repeat domain 33 | -20.0 |
| ASB14 | ankyrin repeat and SOCS box containing 14 | -20.0 |
| USP3 | ubiquitin specific peptidase 3 | -20.0 |
| CFAP126 | cilia and flagella associated protein 126 | -20.0 |
| WIPI1 | WD repeat domain, phosphoinositide interacting 1 | -20.0 |
| ZNF337 | zinc finger protein 337 | -19.0969 |
| ITGB1BP1 | integrin beta 1 binding protein 1 | -19.0969 |
| FKRP | fukutin related protein | -18.6778 |
| H2AFY | H2A histone family, member Y | -17.2873 |
| BOLA1 | bolA family member 1 | -16.7577 |
| GLRX2 | glutaredoxin 2 | -16.572 |
| SIK2 | salt-inducible kinase 2 | -15.9544 |
| SCLT1 | sodium channel and clathrin linker 1 | -13.8554 |
| PTGFR | prostaglandin F receptor (FP) | -13.4689 |
| NR2C2 | nuclear receptor subfamily 2, group C, member 2 | -13.1397 |
| BAG2 | BCL2-associated athanogene 2 | -12.9548 |
| CCDC159 | coiled-coil domain containing 159 | -12.0894 |
| LOC338667 | V-set and immunoglobulin domain-containing protein 10-like | -11.8993 |
| RBM4B | RNA binding motif protein 4B | -11.7689 |
| PLXDC1 | plexin domain containing 1 | -11.126 |
| ATP4B | ATPase, H+/K+ exchanging, beta polypeptide | -11.1212 |
| ANKH | ANKH inorganic pyrophosphate transport regulator | -11.0053 |
| MXRA8 | matrix-remodelling associated 8 | -10.9136 |
| AMDHD2 | amidohydrolase domain containing 2 | -10.7969 |
| ZNF562 | zinc finger protein 562 | -10.3317 |
| ICA1 | islet cell autoantigen 1, 69kDa | -10.1474 |
| RGL4 | ral guanine nucleotide dissociation stimulator-like 4 | -9.99533 |
| HNRNPM | heterogeneous nuclear ribonucleoprotein M | -9.79762 |
| EIF2AK2 | eukaryotic translation initiation factor 2-alpha kinase 2 | -9.60906 |
| SCAI | suppressor of cancer cell invasion | -9.41397 |
| FMNL3 | formin-like 3 | -9.23748 |
| PPIL2 | peptidylprolyl isomerase (cyclophilin)-like 2 | -9.16164 |
| HIST1H1E | histone cluster 1, H1e | -9.08142 |
| DIS3L | DIS3 like exosome 3'-5' exoribonuclease | -9.05206 |
| STK17A | serine/threonine kinase 17a | -8.90443 |
| SIAE | sialic acid acetylesterase | -8.76527 |
| ITPR3 | inositol 1,4,5-trisphosphate receptor, type 3 | -8.74218 |
| METRN | meteorin, glial cell differentiation regulator | -8.68457 |
| ERI2 | ERI1 exoribonuclease family member 2 | -8.63549 |
| CRYZ | crystallin, zeta (quinone reductase) | -8.38382 |
| DNAJC9 | DnaJ (Hsp40) homolog, subfamily C, member 9 | -8.35727 |
| ZBTB45 | zinc finger and BTB domain containing 45 | -8.18481 |
| RFFL | ring finger and FYVE-like domain containing E3 ubiquitin protein ligase | -8.17975 |
| SLC13A4 | solute carrier family 13 (sodium/sulfate symporter), member 4 | -8.09408 |
| RECQL | RecQ helicase-like | -8.00784 |
| LRRC8E | leucine rich repeat containing 8 family, member E | -8.00784 |
| ZC3H14 | zinc finger CCCH-type containing 14 | -8.00575 |
| LDLRAD2 | low density lipoprotein receptor class A domain containing 2 | -7.98799 |
| ALX3 | ALX homeobox 3 | -7.94689 |
| MZF1 | myeloid zinc finger 1 | -7.64993 |
| COX11 | COX11 cytochrome c oxidase copper chaperone | -7.64316 |
| AVIL | advillin | -7.62066 |
| FAM184B | family with sequence similarity 184, member B | -7.60612 |
| OXCT1 | 3-oxoacid CoA transferase 1 | -7.51709 |
| FBXO25 | F-box protein 25 | -7.48256 |
| SLC26A1 | solute carrier family 26 (anion exchanger), member 1 | -7.33862 |
| TMEM8B | transmembrane protein 8B | -7.21523 |
| MXRA7 | matrix-remodelling associated 7 | -7.06744 |
| PEX10 | peroxisomal biogenesis factor 10 | -6.72547 |
| COL10A1 | collagen, type X, alpha 1 | -6.68328 |
| RAB40A | RAB40A, member RAS oncogene family | -6.58189 |
| DPAGT1 | dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) | -6.4669 |
| TIGD7 | tigger transposable element derived 7 | -6.40807 |
| AP1G2 | adaptor-related protein complex 1, gamma 2 subunit | -6.36539 |
| GRIN3A | glutamate receptor, ionotropic, N-methyl-D-aspartate 3A | -6.31844 |
| HIST1H1C | histone cluster 1, H1c | -6.30475 |
| AMN1 | antagonist of mitotic exit network 1 homolog (S. cerevisiae) | -6.22536 |
| TNNI1 | troponin I type 1 (skeletal, slow) | -6.09136 |
| CEMIP | cell migration inducing protein, hyaluronan binding | -6.03157 |
| PSMC1 | proteasome (prosome, macropain) 26S subunit, ATPase, 1 | -6.00247 |
| GCC2 | GRIP and coiled-coil domain containing 2 | -5.99742 |
| ACKR4 | atypical chemokine receptor 4 | -5.96934 |
| TRIM7 | tripartite motif containing 7 | -5.85232 |
| VASH1 | vasohibin 1 | -5.77787 |
| SEPT2 | septin 2 | -5.72214 |
| PKMYT1 | protein kinase, membrane associated tyrosine/threonine 1 | -5.63162 |
| PELI3 | pellino E3 ubiquitin protein ligase family member 3 | -5.59924 |
| MMS19 | MMS19 nucleotide excision repair homolog (S. cerevisiae) | -5.3231 |
| RNF24 | ring finger protein 24 | -5.30575 |
| ACAP1 | ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 | -5.07283 |
| JTB | jumping translocation breakpoint | -5.05473 |
| GARS | glycyl-tRNA synthetase | -5.0417 |
| C12ORF76 | chromosome 12 open reading frame 76 | -5.0191 |
| ZNF717 | zinc finger protein 717 | -4.94617 |
| ERAP1 | endoplasmic reticulum aminopeptidase 1 | -4.92806 |
| POLR1B | polymerase (RNA) I polypeptide B, 128kDa | -4.89877 |
| SLC46A1 | solute carrier family 46 (folate transporter), member 1 | -4.89663 |
| ASPG | asparaginase | -4.87508 |
| MARCH1 | membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase | -4.80118 |
| SLC7A11 | solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 | -4.77241 |
| PPP1R16A | protein phosphatase 1, regulatory subunit 16A | -4.7404 |
| SLC39A1 | solute carrier family 39 (zinc transporter), member 1 | -4.72915 |
| SLC5A2 | solute carrier family 5 (sodium/glucose cotransporter), member 2 | -4.69784 |
| LTB4R2 | leukotriene B4 receptor 2 | -4.69496 |
