| Dataset | PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations |
| Category | transcriptomics |
| Type | gene perturbation |
| Description | KD perturbation targeting RBM39 in BE2C neuroblasoma cell line cell line (Study accession: SRP301121) (PerturbAtlas) |
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200 genes differentially expressed following the Perturb_1324_KD_RBM39_SRP301121 gene perturbation from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| TAS1R3 | taste receptor, type 1, member 3 | 20.0 |
| DQX1 | DEAQ box RNA-dependent ATPase 1 | 20.0 |
| HDAC9 | histone deacetylase 9 | 20.0 |
| MST1 | macrophage stimulating 1 | 20.0 |
| JAM2 | junctional adhesion molecule 2 | 20.0 |
| PFKFB2 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 | 20.0 |
| FN1 | fibronectin 1 | 20.0 |
| GNG13 | guanine nucleotide binding protein (G protein), gamma 13 | 20.0 |
| ARRDC1 | arrestin domain containing 1 | 20.0 |
| GPLD1 | glycosylphosphatidylinositol specific phospholipase D1 | 20.0 |
| NOXO1 | NADPH oxidase organizer 1 | 20.0 |
| COX20 | COX20 cytochrome c oxidase assembly factor | 20.0 |
| C1ORF111 | chromosome 1 open reading frame 111 | 20.0 |
| JADE1 | jade family PHD finger 1 | 20.0 |
| UBXN6 | UBX domain protein 6 | 20.0 |
| SH3D19 | SH3 domain containing 19 | 20.0 |
| METRN | meteorin, glial cell differentiation regulator | 20.0 |
| NIT2 | nitrilase family, member 2 | 20.0 |
| MAMDC4 | MAM domain containing 4 | 20.0 |
| CCDC78 | coiled-coil domain containing 78 | 20.0 |
| B4GALNT1 | beta-1,4-N-acetyl-galactosaminyl transferase 1 | 20.0 |
| MPHOSPH8 | M-phase phosphoprotein 8 | 20.0 |
| SIAH1 | siah E3 ubiquitin protein ligase 1 | 20.0 |
| FLRT1 | fibronectin leucine rich transmembrane protein 1 | 20.0 |
| MACROD1 | MACRO domain containing 1 | 20.0 |
| CORO1B | coronin, actin binding protein, 1B | 19.3979 |
| SLC19A1 | solute carrier family 19 (folate transporter), member 1 | 18.1308 |
| MARCH3 | membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase | 17.9101 |
| HSD3B7 | hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 | 17.9031 |
| KCNB1 | potassium channel, voltage gated Shab related subfamily B, member 1 | 17.8601 |
| NCAPG | non-SMC condensin I complex, subunit G | 17.0472 |
| PEX5L | peroxisomal biogenesis factor 5-like | 16.983 |
| HMHA1 | histocompatibility (minor) HA-1 | 16.7823 |
| RUNDC3A | RUN domain containing 3A | 16.7807 |
| FGF22 | fibroblast growth factor 22 | 16.7172 |
| MYO15B | myosin XVB | 16.2992 |
| H1FX | H1 histone family, member X | 16.2151 |
| USP34 | ubiquitin specific peptidase 34 | 16.136 |
| SNRK | SNF related kinase | 16.1026 |
| ABTB2 | ankyrin repeat and BTB (POZ) domain containing 2 | 15.8962 |
| SUN2 | Sad1 and UNC84 domain containing 2 | 15.5827 |
| NUP88 | nucleoporin 88kDa | 15.3146 |
| FAM169A | family with sequence similarity 169, member A | 15.3087 |
| MEIS2 | Meis homeobox 2 | 14.914 |
| TAX1BP1 | Tax1 (human T-cell leukemia virus type I) binding protein 1 | 14.827 |
| RECQL4 | RecQ protein-like 4 | 14.7048 |
| FANCD2OS | FANCD2 opposite strand | 14.6947 |
| SLC9A3 | solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 | 14.1458 |
| NNAT | neuronatin | 14.079 |
| ZSWIM1 | zinc finger, SWIM-type containing 1 | 14.052 |
| POR | P450 (cytochrome) oxidoreductase | 13.9462 |
| ADRM1 | adhesion regulating molecule 1 | 13.7687 |
| SCO2 | SCO2 cytochrome c oxidase assembly protein | 13.6552 |
| PEX1 | peroxisomal biogenesis factor 1 | 13.6268 |
| TBC1D8 | TBC1 domain family, member 8 (with GRAM domain) | 13.6133 |
| CALY | calcyon neuron-specific vesicular protein | 13.449 |
| MFSD12 | major facilitator superfamily domain containing 12 | 13.4053 |
| RNF224 | ring finger protein 224 | 13.4053 |
| DXO | decapping exoribonuclease | 13.1995 |
| LRTOMT | leucine rich transmembrane and O-methyltransferase domain containing | 13.1995 |
| GNPTAB | N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits | 13.1825 |
| CPTP | ceramide-1-phosphate transfer protein | 12.9377 |
| ZSWIM8 | zinc finger, SWIM-type containing 8 | 12.9219 |
| SLC13A4 | solute carrier family 13 (sodium/sulfate symporter), member 4 | 12.665 |
| NR1D1 | nuclear receptor subfamily 1, group D, member 1 | 12.609 |
| MYRF | myelin regulatory factor | 12.5537 |
| SLC34A3 | solute carrier family 34 (type II sodium/phosphate cotransporter), member 3 | 12.3843 |
| EML5 | echinoderm microtubule associated protein like 5 | 12.2603 |
| XRRA1 | X-ray radiation resistance associated 1 | 12.2603 |
| RNF31 | ring finger protein 31 | 12.1463 |
| GCHFR | GTP cyclohydrolase I feedback regulator | 12.1137 |
| ZNF862 | zinc finger protein 862 | 12.0783 |
| PDCD1 | programmed cell death 1 | 12.0512 |
| ZDHHC8 | zinc finger, DHHC-type containing 8 | 11.9191 |
| NARFL | nuclear prelamin A recognition factor-like | 11.6804 |
| CRACR2B | calcium release activated channel regulator 2B | 11.6749 |
| FAM173A | family with sequence similarity 173, member A | 11.6683 |
| GLS2 | glutaminase 2 (liver, mitochondrial) | 11.573 |
| KCNMB3 | potassium channel subfamily M regulatory beta subunit 3 | 11.5693 |
| TMEM108 | transmembrane protein 108 | 11.445 |
| KCNK12 | potassium channel, two pore domain subfamily K, member 12 | 11.3118 |
| KANK3 | KN motif and ankyrin repeat domains 3 | 11.2595 |
| CYP3A5 | cytochrome P450, family 3, subfamily A, polypeptide 5 | 11.0431 |
| DGKQ | diacylglycerol kinase, theta 110kDa | 10.9973 |
| PIANP | PILR alpha associated neural protein | 10.905 |
| HDAC5 | histone deacetylase 5 | 10.8945 |
| EPB41L4A | erythrocyte membrane protein band 4.1 like 4A | 10.8461 |
| FSD2 | fibronectin type III and SPRY domain containing 2 | 10.6995 |
| IRAK1BP1 | interleukin-1 receptor-associated kinase 1 binding protein 1 | 10.6461 |
| DUOX1 | dual oxidase 1 | 10.5015 |
| RNF151 | ring finger protein 151 | 10.3941 |
| CYSRT1 | cysteine-rich tail protein 1 | 10.1787 |
| KPNA1 | karyopherin alpha 1 (importin alpha 5) | 10.1122 |
| RBFOX3 | RNA binding protein, fox-1 homolog (C. elegans) 3 | 9.81321 |
| TUBB6 | tubulin, beta 6 class V | 9.80444 |
| PMS1 | PMS1 postmeiotic segregation increased 1 (S. cerevisiae) | 9.77334 |
| SLC4A2 | solute carrier family 4 (anion exchanger), member 2 | 9.73242 |
| NFE2L3 | nuclear factor, erythroid 2-like 3 | 9.72199 |
| ZFHX3 | zinc finger homeobox 3 | 9.71352 |
| BCAS3 | breast carcinoma amplified sequence 3 | 9.65726 |
| Symbol | Name | Standardized Value |
|---|---|---|
| PPP1R12B | protein phosphatase 1, regulatory subunit 12B | -20.0 |
| STAB1 | stabilin 1 | -20.0 |
| CPNE8 | copine VIII | -20.0 |
| CTRL | chymotrypsin-like | -20.0 |
| CCDC159 | coiled-coil domain containing 159 | -20.0 |
| TANC2 | tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 | -20.0 |
| DHX8 | DEAH (Asp-Glu-Ala-His) box polypeptide 8 | -20.0 |
| SLC22A25 | solute carrier family 22, member 25 | -20.0 |
| BSCL2 | Berardinelli-Seip congenital lipodystrophy 2 (seipin) | -20.0 |
| ATXN2 | ataxin 2 | -20.0 |
| TCP1 | t-complex 1 | -20.0 |
| UNC45A | unc-45 homolog A (C. elegans) | -20.0 |
| CIRBP | cold inducible RNA binding protein | -20.0 |
| PRR29 | proline rich 29 | -20.0 |
| KCNK15 | potassium channel, two pore domain subfamily K, member 15 | -20.0 |
| C12ORF65 | chromosome 12 open reading frame 65 | -20.0 |
| PHYKPL | 5-phosphohydroxy-L-lysine phospho-lyase | -20.0 |
| CENPN | centromere protein N | -20.0 |
| CCDC33 | coiled-coil domain containing 33 | -20.0 |
| SARDH | sarcosine dehydrogenase | -20.0 |
| NR2C2AP | nuclear receptor 2C2-associated protein | -20.0 |
| SNAP47 | synaptosomal-associated protein, 47kDa | -20.0 |
| SLC9A5 | solute carrier family 9, subfamily A (NHE5, cation proton antiporter 5), member 5 | -20.0 |
| MAPK7 | mitogen-activated protein kinase 7 | -20.0 |
| MCM3AP | minichromosome maintenance complex component 3 associated protein | -20.0 |
| EMG1 | EMG1 N1-specific pseudouridine methyltransferase | -20.0 |
| STRA6 | stimulated by retinoic acid 6 | -20.0 |
| BCAN | brevican | -20.0 |
| TUBA1C | tubulin, alpha 1c | -20.0 |
| YIPF2 | Yip1 domain family, member 2 | -20.0 |
| IKBKG | inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma | -20.0 |
| ISLR | immunoglobulin superfamily containing leucine-rich repeat | -20.0 |
| PHKA2 | phosphorylase kinase, alpha 2 (liver) | -20.0 |
| CGREF1 | cell growth regulator with EF-hand domain 1 | -20.0 |
| CDK4 | cyclin-dependent kinase 4 | -20.0 |
| C16ORF70 | chromosome 16 open reading frame 70 | -20.0 |
| RPL10 | ribosomal protein L10 | -20.0 |
| C12ORF60 | chromosome 12 open reading frame 60 | -19.699 |
| STAT1 | signal transducer and activator of transcription 1, 91kDa | -19.1549 |
| SLC5A6 | solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6 | -18.9586 |
| FKRP | fukutin related protein | -18.6576 |
| MYLK | myosin light chain kinase | -18.6198 |
| FKBP15 | FK506 binding protein 15, 133kDa | -18.4815 |
| PDCD4 | programmed cell death 4 (neoplastic transformation inhibitor) | -17.9957 |
| SARM1 | sterile alpha and TIR motif containing 1 | -17.8539 |
| SNX32 | sorting nexin 32 | -17.6696 |
| GCNT1 | glucosaminyl (N-acetyl) transferase 1, core 2 | -17.5272 |
| LRRC55 | leucine rich repeat containing 55 | -17.3487 |
| PHKG1 | phosphorylase kinase, gamma 1 (muscle) | -17.1013 |
| CRYBG3 | beta-gamma crystallin domain containing 3 | -17.0273 |
| LIG3 | ligase III, DNA, ATP-dependent | -17.007 |
| HNRNPU | heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) | -16.965 |
| CDON | cell adhesion associated, oncogene regulated | -16.9318 |
| KLK2 | kallikrein-related peptidase 2 | -16.9289 |
| LPCAT3 | lysophosphatidylcholine acyltransferase 3 | -16.8465 |
| PEX14 | peroxisomal biogenesis factor 14 | -16.7878 |
| TRAPPC4 | trafficking protein particle complex 4 | -16.7172 |
| KRT17 | keratin 17, type I | -16.5629 |
| CEP44 | centrosomal protein 44kDa | -16.5611 |
| C15ORF40 | chromosome 15 open reading frame 40 | -16.5102 |
| C1ORF122 | chromosome 1 open reading frame 122 | -16.3992 |
| RSPH9 | radial spoke head 9 homolog (Chlamydomonas) | -15.959 |
| APC2 | adenomatosis polyposis coli 2 | -15.7819 |
| KIF2A | kinesin heavy chain member 2A | -15.45 |
| SNAP23 | synaptosomal-associated protein, 23kDa | -15.3121 |
| ACTR1A | ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) | -15.3121 |
| PRR19 | proline rich 19 | -15.3074 |
| HIST1H4I | histone cluster 1, H4i | -15.2455 |
| CYB561 | cytochrome b561 | -15.2244 |
| HOOK2 | hook microtubule-tethering protein 2 | -14.943 |
| PCNXL4 | pecanex-like 4 (Drosophila) | -14.9287 |
| BRD7 | bromodomain containing 7 | -14.1439 |
| ENDOG | endonuclease G | -13.9993 |
| FAM134C | family with sequence similarity 134, member C | -13.9772 |
| HCFC1R1 | host cell factor C1 regulator 1 (XPO1 dependent) | -13.7557 |
| VTI1B | vesicle transport through interaction with t-SNAREs 1B | -13.2849 |
| P4HA3 | prolyl 4-hydroxylase, alpha polypeptide III | -13.1725 |
| MRPL43 | mitochondrial ribosomal protein L43 | -13.1698 |
| APBB3 | amyloid beta (A4) precursor protein-binding, family B, member 3 | -13.0271 |
| PRICKLE3 | prickle homolog 3 (Drosophila) | -12.8106 |
| RNF34 | ring finger protein 34, E3 ubiquitin protein ligase | -12.7689 |
| TSPAN18 | tetraspanin 18 | -12.7415 |
| CDC42SE1 | CDC42 small effector 1 | -12.673 |
| GNPTG | N-acetylglucosamine-1-phosphate transferase, gamma subunit | -12.6652 |
| GPS2 | G protein pathway suppressor 2 | -12.6452 |
| FAM149B1 | family with sequence similarity 149, member B1 | -12.3858 |
| SPTB | spectrin, beta, erythrocytic | -12.3574 |
| TNPO1 | transportin 1 | -12.3358 |
| NQO2 | NAD(P)H dehydrogenase, quinone 2 | -12.2862 |
| CCNH | cyclin H | -12.1853 |
| VIL1 | villin 1 | -12.1544 |
| UBXN11 | UBX domain protein 11 | -12.1529 |
| TMEM262 | transmembrane protein 262 | -12.1396 |
| SLC6A2 | solute carrier family 6 (neurotransmitter transporter), member 2 | -12.1156 |
| GRIP2 | glutamate receptor interacting protein 2 | -12.1096 |
| TIMM22 | translocase of inner mitochondrial membrane 22 homolog (yeast) | -11.8298 |
| RAPSN | receptor-associated protein of the synapse | -11.7339 |
| MINA | MYC induced nuclear antigen | -11.5261 |
| ZNF593OS | ZNF593 opposite strand | -11.4021 |
| SERHL2 | serine hydrolase-like 2 | -11.3414 |
