| Dataset | PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations |
| Category | transcriptomics |
| Type | gene perturbation |
| Description | KD perturbation targeting KHDRBS3 in fibroblasts BJ cell line (Study accession: SRP271175) (PerturbAtlas) |
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200 genes differentially expressed following the Perturb_6029_KD_KHDRBS3_SRP271175 gene perturbation from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| NABP1 | nucleic acid binding protein 1 | 20.0 |
| TOB1 | transducer of ERBB2, 1 | 20.0 |
| EIF5B | eukaryotic translation initiation factor 5B | 20.0 |
| CDC42 | cell division cycle 42 | 20.0 |
| ZNF106 | zinc finger protein 106 | 20.0 |
| MARCH6 | membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase | 20.0 |
| COLGALT1 | collagen beta(1-O)galactosyltransferase 1 | 20.0 |
| NF2 | neurofibromin 2 (merlin) | 20.0 |
| BICC1 | BicC family RNA binding protein 1 | 20.0 |
| TTC39C | tetratricopeptide repeat domain 39C | 20.0 |
| RTN4 | reticulon 4 | 20.0 |
| SEMA5A | sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A | 20.0 |
| RBM6 | RNA binding motif protein 6 | 20.0 |
| CRIM1 | cysteine rich transmembrane BMP regulator 1 (chordin-like) | 20.0 |
| SET | SET nuclear proto-oncogene | 20.0 |
| SDC4 | syndecan 4 | 20.0 |
| GOLIM4 | golgi integral membrane protein 4 | 20.0 |
| NEMF | nuclear export mediator factor | 20.0 |
| DIO2 | deiodinase, iodothyronine, type II | 20.0 |
| UBE2B | ubiquitin-conjugating enzyme E2B | 20.0 |
| NUDT19 | nudix (nucleoside diphosphate linked moiety X)-type motif 19 | 20.0 |
| TLK1 | tousled-like kinase 1 | 20.0 |
| TACC1 | transforming, acidic coiled-coil containing protein 1 | 20.0 |
| ANKRD10 | ankyrin repeat domain 10 | 20.0 |
| TMEM245 | transmembrane protein 245 | 20.0 |
| MTDH | metadherin | 20.0 |
| WBP1L | WW domain binding protein 1-like | 20.0 |
| TOR1AIP2 | torsin A interacting protein 2 | 20.0 |
| STRN3 | striatin, calmodulin binding protein 3 | 20.0 |
| RAB31 | RAB31, member RAS oncogene family | 20.0 |
| RAB3B | RAB3B, member RAS oncogene family | 20.0 |
| TMEM263 | transmembrane protein 263 | 20.0 |
| APOBEC3C | apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C | 20.0 |
| ZC3HAV1 | zinc finger CCCH-type, antiviral 1 | 20.0 |
| FKBP9 | FK506 binding protein 9, 63 kDa | 20.0 |
| EIF4B | eukaryotic translation initiation factor 4B | 20.0 |
| PPP1CB | protein phosphatase 1, catalytic subunit, beta isozyme | 20.0 |
| RPL17 | ribosomal protein L17 | 20.0 |
| PRKCA | protein kinase C, alpha | 20.0 |
| TNRC6B | trinucleotide repeat containing 6B | 20.0 |
| ENAH | enabled homolog (Drosophila) | 20.0 |
| C6ORF62 | chromosome 6 open reading frame 62 | 20.0 |
| SOX4 | SRY (sex determining region Y)-box 4 | 20.0 |
| GOLGA3 | golgin A3 | 20.0 |
| SRSF6 | serine/arginine-rich splicing factor 6 | 20.0 |
| DNAJC3 | DnaJ (Hsp40) homolog, subfamily C, member 3 | 20.0 |
| MIER1 | mesoderm induction early response 1, transcriptional regulator | 20.0 |
| GNAI2 | guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 | 20.0 |
| RHOBTB3 | Rho-related BTB domain containing 3 | 20.0 |
| STAT2 | signal transducer and activator of transcription 2, 113kDa | 20.0 |
| PHACTR2 | phosphatase and actin regulator 2 | 20.0 |
| GLG1 | golgi glycoprotein 1 | 20.0 |
| KIF3B | kinesin family member 3B | 20.0 |
| SGPL1 | sphingosine-1-phosphate lyase 1 | 20.0 |
| TRIM59 | tripartite motif containing 59 | 20.0 |
| TMED4 | transmembrane emp24 protein transport domain containing 4 | 20.0 |
| ELMSAN1 | ELM2 and Myb/SANT-like domain containing 1 | 20.0 |
| NIPAL3 | NIPA-like domain containing 3 | 20.0 |
| SERINC5 | serine incorporator 5 | 20.0 |
| ADNP | activity-dependent neuroprotector homeobox | 20.0 |
| MARCKS | myristoylated alanine-rich protein kinase C substrate | 20.0 |
| ZAK | sterile alpha motif and leucine zipper containing kinase AZK | 20.0 |
| BROX | BRO1 domain and CAAX motif containing | 20.0 |
| YWHAB | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta | 20.0 |
| PTPN14 | protein tyrosine phosphatase, non-receptor type 14 | 20.0 |
| PPP3CA | protein phosphatase 3, catalytic subunit, alpha isozyme | 20.0 |
| MAP1B | microtubule-associated protein 1B | 20.0 |
| ADAM19 | ADAM metallopeptidase domain 19 | 20.0 |
| MEIS1 | Meis homeobox 1 | 20.0 |
| SLC35F6 | solute carrier family 35, member F6 | 20.0 |
| KCTD10 | potassium channel tetramerization domain containing 10 | 20.0 |
| CHP1 | calcineurin-like EF-hand protein 1 | 20.0 |
| TMEM33 | transmembrane protein 33 | 20.0 |
| TSPYL1 | TSPY-like 1 | 20.0 |
| AXL | AXL receptor tyrosine kinase | 20.0 |
| KPNA6 | karyopherin alpha 6 (importin alpha 7) | 20.0 |
| CAMK2N1 | calcium/calmodulin-dependent protein kinase II inhibitor 1 | 20.0 |
| FAM171B | family with sequence similarity 171, member B | 20.0 |
| PPP6R3 | protein phosphatase 6, regulatory subunit 3 | 20.0 |
| PXDN | peroxidasin | 20.0 |
| NPEPPS | aminopeptidase puromycin sensitive | 20.0 |
| DDAH1 | dimethylarginine dimethylaminohydrolase 1 | 20.0 |
| NLRP6 | NLR family, pyrin domain containing 6 | 20.0 |
| RQCD1 | RCD1 required for cell differentiation1 homolog (S. pombe) | 20.0 |
| CTTN | cortactin | 20.0 |
| EIF2S3 | eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa | 20.0 |
| GPRC5A | G protein-coupled receptor, class C, group 5, member A | 20.0 |
| FAM114A1 | family with sequence similarity 114, member A1 | 20.0 |
| CCNI | cyclin I | 20.0 |
| B4GALT1 | UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 | 20.0 |
| FNIP1 | folliculin interacting protein 1 | 20.0 |
| SEC22B | SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) | 20.0 |
| PIP4K2A | phosphatidylinositol-5-phosphate 4-kinase, type II, alpha | 20.0 |
| BAG4 | BCL2-associated athanogene 4 | 20.0 |
| USP22 | ubiquitin specific peptidase 22 | 20.0 |
| TIMP3 | TIMP metallopeptidase inhibitor 3 | 20.0 |
| PAFAH1B2 | platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) | 20.0 |
| NONO | non-POU domain containing, octamer-binding | 20.0 |
| REEP3 | receptor accessory protein 3 | 20.0 |
| CACUL1 | CDK2-associated, cullin domain 1 | 20.0 |
| Symbol | Name | Standardized Value |
|---|---|---|
| ASNA1 | arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) | -20.0 |
| CASP7 | caspase 7, apoptosis-related cysteine peptidase | -20.0 |
| LMAN2L | lectin, mannose-binding 2-like | -20.0 |
| LSM7 | LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) | -20.0 |
| HMGCL | 3-hydroxymethyl-3-methylglutaryl-CoA lyase | -20.0 |
| UMPS | uridine monophosphate synthetase | -20.0 |
| BPGM | 2,3-bisphosphoglycerate mutase | -20.0 |
| SCCPDH | saccharopine dehydrogenase (putative) | -20.0 |
| MED20 | mediator complex subunit 20 | -20.0 |
| AGTRAP | angiotensin II receptor-associated protein | -20.0 |
| CSRP2 | cysteine and glycine-rich protein 2 | -20.0 |
| MRPL55 | mitochondrial ribosomal protein L55 | -20.0 |
| MRPL54 | mitochondrial ribosomal protein L54 | -20.0 |
| PQBP1 | polyglutamine binding protein 1 | -20.0 |
| COQ9 | coenzyme Q9 | -20.0 |
| ACTR8 | ARP8 actin-related protein 8 homolog (yeast) | -20.0 |
| NUDT16L1 | nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1 | -20.0 |
| ETFB | electron-transfer-flavoprotein, beta polypeptide | -20.0 |
| WIBG | within bgcn homolog (Drosophila) | -20.0 |
| RPUSD3 | RNA pseudouridylate synthase domain containing 3 | -20.0 |
| PMF1 | polyamine-modulated factor 1 | -20.0 |
| AKIP1 | A kinase (PRKA) interacting protein 1 | -20.0 |
| SIRT2 | sirtuin 2 | -20.0 |
| CFAP20 | cilia and flagella associated protein 20 | -20.0 |
| STRA13 | stimulated by retinoic acid 13 | -20.0 |
| HIBCH | 3-hydroxyisobutyryl-CoA hydrolase | -20.0 |
| MRPL36 | mitochondrial ribosomal protein L36 | -20.0 |
| CD320 | CD320 molecule | -20.0 |
| NGRN | neugrin, neurite outgrowth associated | -20.0 |
| SLC35A4 | solute carrier family 35, member A4 | -20.0 |
| VWA9 | von Willebrand factor A domain containing 9 | -20.0 |
| DPCD | deleted in primary ciliary dyskinesia homolog (mouse) | -20.0 |
| COMMD4 | COMM domain containing 4 | -20.0 |
| ASH2L | ash2 (absent, small, or homeotic)-like (Drosophila) | -20.0 |
| SF3B4 | splicing factor 3b, subunit 4, 49kDa | -20.0 |
| YIPF1 | Yip1 domain family, member 1 | -20.0 |
| CTNNBL1 | catenin, beta like 1 | -20.0 |
| RNF25 | ring finger protein 25 | -20.0 |
| C12ORF57 | chromosome 12 open reading frame 57 | -20.0 |
| NHP2 | NHP2 ribonucleoprotein | -20.0 |
| NDUFS7 | NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) | -20.0 |
| ISCA2 | iron-sulfur cluster assembly 2 | -20.0 |
| MTHFD1 | methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase | -20.0 |
| LCMT1 | leucine carboxyl methyltransferase 1 | -20.0 |
| CCDC12 | coiled-coil domain containing 12 | -20.0 |
| MAD2L1BP | MAD2L1 binding protein | -20.0 |
| SLC50A1 | solute carrier family 50 (sugar efflux transporter), member 1 | -20.0 |
| ERI3 | ERI1 exoribonuclease family member 3 | -20.0 |
| NSDHL | NAD(P) dependent steroid dehydrogenase-like | -20.0 |
| YIPF2 | Yip1 domain family, member 2 | -20.0 |
| NCBP2-AS2 | NCBP2 antisense RNA 2 (head to head) | -20.0 |
| MRPS12 | mitochondrial ribosomal protein S12 | -20.0 |
| MRPS11 | mitochondrial ribosomal protein S11 | -20.0 |
| DPM2 | dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit | -20.0 |
| DPM1 | dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit | -20.0 |
| PRAF2 | PRA1 domain family, member 2 | -20.0 |
| TMED1 | transmembrane emp24 protein transport domain containing 1 | -20.0 |
| ACO2 | aconitase 2, mitochondrial | -20.0 |
| TMEM69 | transmembrane protein 69 | -20.0 |
| RABIF | RAB interacting factor | -20.0 |
| ABT1 | activator of basal transcription 1 | -20.0 |
| ERCC3 | excision repair cross-complementation group 3 | -20.0 |
| HMCES | 5-hydroxymethylcytosine (hmC) binding, ES cell-specific | -20.0 |
| ZNF330 | zinc finger protein 330 | -20.0 |
| ST7 | suppression of tumorigenicity 7 | -20.0 |
| DNPH1 | 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 | -20.0 |
| MCCC1 | methylcrotonoyl-CoA carboxylase 1 (alpha) | -20.0 |
| ELP5 | elongator acetyltransferase complex subunit 5 | -20.0 |
| C11ORF49 | chromosome 11 open reading frame 49 | -20.0 |
| CCBL2 | cysteine conjugate-beta lyase 2 | -20.0 |
| ALG1 | ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase | -20.0 |
| MRPS9 | mitochondrial ribosomal protein S9 | -20.0 |
| FANCA | Fanconi anemia, complementation group A | -20.0 |
| PSMG1 | proteasome (prosome, macropain) assembly chaperone 1 | -20.0 |
| TFB2M | transcription factor B2, mitochondrial | -20.0 |
| ZNF706 | zinc finger protein 706 | -20.0 |
| ACAD9 | acyl-CoA dehydrogenase family, member 9 | -20.0 |
| G6PC3 | glucose 6 phosphatase, catalytic, 3 | -20.0 |
| C11ORF31 | chromosome 11 open reading frame 31 | -20.0 |
| STYXL1 | serine/threonine/tyrosine interacting-like 1 | -20.0 |
| TXNDC12 | thioredoxin domain containing 12 (endoplasmic reticulum) | -20.0 |
| FTSJ3 | FtsJ homolog 3 (E. coli) | -20.0 |
| PBDC1 | polysaccharide biosynthesis domain containing 1 | -20.0 |
| TUBG1 | tubulin, gamma 1 | -20.0 |
| UXT | ubiquitously-expressed, prefoldin-like chaperone | -20.0 |
| PMVK | phosphomevalonate kinase | -20.0 |
| SELENBP1 | selenium binding protein 1 | -20.0 |
| GATB | glutamyl-tRNA(Gln) amidotransferase, subunit B | -20.0 |
| COX14 | COX14 cytochrome c oxidase assembly factor | -20.0 |
| TMEM101 | transmembrane protein 101 | -20.0 |
| ALAS1 | 5'-aminolevulinate synthase 1 | -20.0 |
| GNG5 | guanine nucleotide binding protein (G protein), gamma 5 | -20.0 |
| ARL16 | ADP-ribosylation factor-like 16 | -20.0 |
| NGDN | neuroguidin, EIF4E binding protein | -20.0 |
| SUPT7L | suppressor of Ty 7 (S. cerevisiae)-like | -20.0 |
| TIMM10B | translocase of inner mitochondrial membrane 10 homolog B (yeast) | -20.0 |
| ERAL1 | Era-like 12S mitochondrial rRNA chaperone 1 | -20.0 |
| LINC00998 | long intergenic non-protein coding RNA 998 | -20.0 |
| NXF1 | nuclear RNA export factor 1 | -20.0 |
| TIMM8B | translocase of inner mitochondrial membrane 8 homolog B (yeast) | -20.0 |
