Pexidartinib (hydrochloride)_A498 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Pexidartinib (hydrochloride) perturbation in A498 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Pexidartinib (hydrochloride)_A498 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
CXCL8 chemokine (C-X-C motif) ligand 8 0.29772
ASPH aspartate beta-hydroxylase 0.237668
NAMPT nicotinamide phosphoribosyltransferase 0.188489
TXNRD1 thioredoxin reductase 1 0.135549
NRP2 neuropilin 2 0.107306
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.106264
CD44 CD44 molecule (Indian blood group) 0.0936054
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0836584
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0800436
GLS2 glutaminase 2 (liver, mitochondrial) 0.075232
CCL2 chemokine (C-C motif) ligand 2 0.0712783
RPS2 ribosomal protein S2 0.0699679
GPC6 glypican 6 0.0671135
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.0669303
EEF2 eukaryotic translation elongation factor 2 0.0654561
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0652316
MYH9 myosin, heavy chain 9, non-muscle 0.062788
ICAM1 intercellular adhesion molecule 1 0.0622749
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.0607546
AKR1B1 aldo-keto reductase family 1, member B1 (aldose reductase) 0.0602994
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0598468
TRIO trio Rho guanine nucleotide exchange factor 0.0594931
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0585919
GLIS3 GLIS family zinc finger 3 0.0584221
FAT1 FAT atypical cadherin 1 0.0583643
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0576786
EXT1 exostosin glycosyltransferase 1 0.0576362
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0574143
NRIP1 nuclear receptor interacting protein 1 0.0540818
VCAM1 vascular cell adhesion molecule 1 0.0536124
PLK2 polo-like kinase 2 0.0519726
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0502675
LDHA lactate dehydrogenase A 0.0494518
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0472749
TGFB2 transforming growth factor, beta 2 0.0472329
FNDC3B fibronectin type III domain containing 3B 0.0457135
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0454369
FLNA filamin A, alpha 0.0448265
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0446447
NFIB nuclear factor I/B 0.0442561
RNF213 ring finger protein 213 0.0435228
PTPRJ protein tyrosine phosphatase, receptor type, J 0.0433398
RIPK2 receptor-interacting serine-threonine kinase 2 0.0430878
CSF1 colony stimulating factor 1 (macrophage) 0.0430327
SMAD3 SMAD family member 3 0.0426765
SET SET nuclear proto-oncogene 0.0425084
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 0.0424451
NAP1L1 nucleosome assembly protein 1-like 1 0.0423995
ANKRD33B ankyrin repeat domain 33B 0.0403572
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide 0.0398537
FTH1 ferritin, heavy polypeptide 1 0.0396018
DST dystonin 0.0392406
VCAN versican 0.039114
ETV6 ets variant 6 0.0389606
KLF7 Kruppel-like factor 7 (ubiquitous) 0.0358389
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0353607
DDIT4 DNA-damage-inducible transcript 4 0.0352024
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0347109
NFE2L1 nuclear factor, erythroid 2-like 1 0.0346094
KYNU kynureninase 0.0344419
ANLN anillin, actin binding protein 0.0342963
RAI14 retinoic acid induced 14 0.0338681
BHLHE40 basic helix-loop-helix family, member e40 0.0333488
APP amyloid beta (A4) precursor protein 0.0333194
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b 0.03329
MYOF myoferlin 0.0325181
BIRC3 baculoviral IAP repeat containing 3 0.0324986
HMGB2 high mobility group box 2 0.0318506
CXCL2 chemokine (C-X-C motif) ligand 2 0.031703
SLC39A14 solute carrier family 39 (zinc transporter), member 14 0.0316366
TGFBI transforming growth factor, beta-induced, 68kDa 0.0315456
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 0.0313562
ANXA1 annexin A1 0.0311379
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.030992
RIGI RNA sensor RIG-I 0.0307661
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0303391
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.0300812
P3H2 prolyl 3-hydroxylase 2 0.0299942
SLTM SAFB-like, transcription modulator 0.0298481
TUSC3 tumor suppressor candidate 3 0.0296876
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0286563
ARRDC3 arrestin domain containing 3 0.028226
RACK1 receptor for activated C kinase 1 0.0282227
MBNL2 muscleblind-like splicing regulator 2 0.0279953
NCKAP1 NCK-associated protein 1 0.0278852
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0278826
RPS4X ribosomal protein S4, X-linked 0.0277803
MKI67 marker of proliferation Ki-67 0.0277112
CREB3L2 cAMP responsive element binding protein 3-like 2 0.0276726
ERBIN erbb2 interacting protein 0.0275277
TNS3 tensin 3 0.0275175
ATXN10 ataxin 10 0.0270375
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0270317
JAK1 Janus kinase 1 0.0269162
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0267787
ANXA2 annexin A2 0.0266512
TGFA transforming growth factor, alpha 0.0265987
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0259906
KTN1 kinectin 1 (kinesin receptor) 0.0259815
TKT transketolase 0.0256416

decreased expression

Symbol Name Standardized Value
IGFBP3 insulin-like growth factor binding protein 3 -0.186005
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.129265
TMSB10 thymosin beta 10 -0.110557
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0872997
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0655523
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0543334
ZFP36L1 ZFP36 ring finger protein-like 1 -0.0510511
APOL1 apolipoprotein L, 1 -0.047361
CTSD cathepsin D -0.0468034
RPS6 ribosomal protein S6 -0.0435279
B2M beta-2-microglobulin -0.0426705
PLIN2 perilipin 2 -0.0418139
ARL4C ADP-ribosylation factor-like 4C -0.04108
FRMD4A FERM domain containing 4A -0.0409255
FRMD5 FERM domain containing 5 -0.0406063
UBC ubiquitin C -0.0395039
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0385187
TPT1 tumor protein, translationally-controlled 1 -0.0380717
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0375566
HLA-B major histocompatibility complex, class I, B -0.0361701
SCFD2 sec1 family domain containing 2 -0.0359152
CUX1 cut-like homeobox 1 -0.035675
CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 -0.0349483
HSPB1 heat shock 27kDa protein 1 -0.0336987
NDRG1 N-myc downstream regulated 1 -0.0325418
PPIB peptidylprolyl isomerase B (cyclophilin B) -0.0312464
TFPI2 tissue factor pathway inhibitor 2 -0.0306632
HM13 histocompatibility (minor) 13 -0.0302286
CKAP4 cytoskeleton-associated protein 4 -0.0295447
S100A6 S100 calcium binding protein A6 -0.0294745
RPS21 ribosomal protein S21 -0.0294176
LY6E lymphocyte antigen 6 complex, locus E -0.0293801
IFI27 interferon, alpha-inducible protein 27 -0.0292896
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0292
IFITM3 interferon induced transmembrane protein 3 -0.0289452
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0277329
PRKCA protein kinase C, alpha -0.0273363
ADM adrenomedullin -0.0271099
CP ceruloplasmin (ferroxidase) -0.0269829
TIMP2 TIMP metallopeptidase inhibitor 2 -0.0263932
RPS6KC1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 -0.0260759
PPIG peptidylprolyl isomerase G (cyclophilin G) -0.0259116
GCC2 GRIP and coiled-coil domain containing 2 -0.0256312
AKAP9 A kinase (PRKA) anchor protein 9 -0.0255231
TMED9 transmembrane emp24 protein transport domain containing 9 -0.0253495
BLZF1 basic leucine zipper nuclear factor 1 -0.0251785
MRPS6 mitochondrial ribosomal protein S6 -0.0245481
SPDYA speedy/RINGO cell cycle regulator family member A -0.0244883
RPS24 ribosomal protein S24 -0.02446
HLA-C major histocompatibility complex, class I, C -0.0242895
RPL35A ribosomal protein L35a -0.0237867
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0235358
SLC31A1 solute carrier family 31 (copper transporter), member 1 -0.0233998
TTC3 tetratricopeptide repeat domain 3 -0.0233642
S100A9 S100 calcium binding protein A9 -0.0230662
CYBA cytochrome b-245, alpha polypeptide -0.0228936
BOD1L1 biorientation of chromosomes in cell division 1-like 1 -0.0224923
ADGRG1 adhesion G protein-coupled receptor G1 -0.02242
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0223624
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0223461
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) -0.0219283
RPS13 ribosomal protein S13 -0.0218932
SQLE squalene epoxidase -0.0218078
PTMA prothymosin, alpha -0.0216479
COG6 component of oligomeric golgi complex 6 -0.0214647
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) -0.0214588
CD63 CD63 molecule -0.0214046
FTL ferritin, light polypeptide -0.0211678
S100A11 S100 calcium binding protein A11 -0.0210713
ATP5F1B ATP synthase F1 subunit beta -0.0210181
TUBA1B tubulin, alpha 1b -0.0207645
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 -0.0205822
P4HA2 prolyl 4-hydroxylase, alpha polypeptide II -0.0204704
GOSR1 golgi SNAP receptor complex member 1 -0.0203519
RPS15 ribosomal protein S15 -0.0202288
CLMP CXADR-like membrane protein -0.0199485
TPM1 tropomyosin 1 (alpha) -0.0198505
SLC35E1 solute carrier family 35, member E1 -0.0191851
VEGFA vascular endothelial growth factor A -0.0189084
RNASET2 ribonuclease T2 -0.0188861
TM4SF1 transmembrane 4 L six family member 1 -0.0188252
IFI6 interferon, alpha-inducible protein 6 -0.0188239
RPS11 ribosomal protein S11 -0.0188103
RPL12 ribosomal protein L12 -0.0187224
SPTY2D1 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae) -0.0186794
SLC9A3R1 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1 -0.0185919
SERF2 small EDRK-rich factor 2 -0.0183816
RPS23 ribosomal protein S23 -0.0183665
S100A10 S100 calcium binding protein A10 -0.0182658
ACLY ATP citrate lyase -0.0182395
RPL28 ribosomal protein L28 -0.0182366
HLA-A major histocompatibility complex, class I, A -0.0181695
UBAP2 ubiquitin associated protein 2 -0.0180992
TOMM20 translocase of outer mitochondrial membrane 20 homolog (yeast) -0.0179162
NAV2 neuron navigator 2 -0.0178137
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.017766
RPS6KA2 ribosomal protein S6 kinase, 90kDa, polypeptide 2 -0.0177615
AHNAK AHNAK nucleoprotein -0.0177541
VPS53 vacuolar protein sorting 53 homolog (S. cerevisiae) -0.0177481
MYADM myeloid-associated differentiation marker -0.0177467