Pexidartinib (hydrochloride)_AN3 CA Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Pexidartinib (hydrochloride) perturbation in AN3 CA cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Pexidartinib (hydrochloride)_AN3 CA drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
MEST mesoderm specific transcript 0.284085
EEF2 eukaryotic translation elongation factor 2 0.0984346
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0928332
RPS2 ribosomal protein S2 0.0838275
VIM vimentin 0.0786918
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.063236
LDHA lactate dehydrogenase A 0.0618195
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.0598461
SET SET nuclear proto-oncogene 0.057333
RACK1 receptor for activated C kinase 1 0.0566274
PEG10 paternally expressed 10 0.0528718
LINGO2 leucine rich repeat and Ig domain containing 2 0.0514173
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0512971
VEGFA vascular endothelial growth factor A 0.0507666
ZNF292 zinc finger protein 292 0.0483362
ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein 0.045723
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0451621
RPS12 ribosomal protein S12 0.0451439
DDIT4 DNA-damage-inducible transcript 4 0.0432891
FGFR1 fibroblast growth factor receptor 1 0.0428002
PCBP2 poly(rC) binding protein 2 0.0423328
RPL37A ribosomal protein L37a 0.0419407
RPS3 ribosomal protein S3 0.0416683
ZFP36L1 ZFP36 ring finger protein-like 1 0.0356774
CALR calreticulin 0.0353054
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0347524
SMC1A structural maintenance of chromosomes 1A 0.0340814
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0336717
PDIA3 protein disulfide isomerase family A, member 3 0.0334729
PKM pyruvate kinase, muscle 0.0330434
IGF2 insulin-like growth factor 2 0.0329672
SOX4 SRY (sex determining region Y)-box 4 0.0307654
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0297803
ID3 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein 0.0279577
PIAS2 protein inhibitor of activated STAT, 2 0.027657
CENPF centromere protein F, 350/400kDa 0.0275577
G3BP2 GTPase activating protein (SH3 domain) binding protein 2 0.0275341
NUP58 nucleoporin 58 0.027434
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0274321
ALDH1A2 aldehyde dehydrogenase 1 family, member A2 0.0274306
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0271447
RPS17 ribosomal protein S17 0.0271025
GPBP1 GC-rich promoter binding protein 1 0.0270486
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0269898
KPNA5 karyopherin alpha 5 (importin alpha 6) 0.0265521
NUCB2 nucleobindin 2 0.0263193
PTP4A2 protein tyrosine phosphatase type IVA, member 2 0.0261324
ANKRD17 ankyrin repeat domain 17 0.0258351
RPS8 ribosomal protein S8 0.0257605
CBX3 chromobox homolog 3 0.0256176
FTH1 ferritin, heavy polypeptide 1 0.0255549
RSRC2 arginine/serine-rich coiled-coil 2 0.0252369
PDIA6 protein disulfide isomerase family A, member 6 0.0250372
NFIB nuclear factor I/B 0.0249046
CSNK1A1 casein kinase 1, alpha 1 0.0247847
EGFR epidermal growth factor receptor 0.0244695
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0243916
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.0238968
FER fer (fps/fes related) tyrosine kinase 0.0238262
PSMD2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 0.0237633
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0234049
LNPK lunapark, ER junction formation factor 0.0233284
CAND1 cullin-associated and neddylation-dissociated 1 0.0229584
KIF5B kinesin family member 5B 0.0227419
SCARB2 scavenger receptor class B, member 2 0.0227181
TAC4 tachykinin 4 (hemokinin) 0.022703
MXI1 MAX interactor 1, dimerization protein 0.0226502
RPL17-C18ORF32 RPL17-C18orf32 readthrough 0.0226397
RPL37 ribosomal protein L37 0.0223981
RBBP4 retinoblastoma binding protein 4 0.022045
KLF10 Kruppel-like factor 10 0.0220444
DHRS3 dehydrogenase/reductase (SDR family) member 3 0.0219872
RPLP1 ribosomal protein, large, P1 0.0217514
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1 0.0215504
SSR1 signal sequence receptor, alpha 0.021514
PFN1 profilin 1 0.0214458
KMT2E lysine (K)-specific methyltransferase 2E 0.0212584
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0209383
EEF1G eukaryotic translation elongation factor 1 gamma 0.0209205
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0207133
NDRG1 N-myc downstream regulated 1 0.0206279
MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 0.0205897
MATR3 matrin 3 0.020586
CTDSPL2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 0.0203232
HYOU1 hypoxia up-regulated 1 0.02031
PPP3R1 protein phosphatase 3, regulatory subunit B, alpha 0.0202363
SPRY4 sprouty homolog 4 (Drosophila) 0.0201746
PRELID2 PRELI domain containing 2 0.0199174
YBX1 Y box binding protein 1 0.0198472
JARID2 jumonji, AT rich interactive domain 2 0.0196765
RPL13A ribosomal protein L13a 0.0194888
TCERG1 transcription elongation regulator 1 0.0194061
PRKD1 protein kinase D1 0.0193245
RNPS1 RNA binding protein S1, serine-rich domain 0.0193234
RAB6A RAB6A, member RAS oncogene family 0.0190709
ARGLU1 arginine and glutamate rich 1 0.0190355
FTL ferritin, light polypeptide 0.018945
MKI67 marker of proliferation Ki-67 0.0189145
FBXL5 F-box and leucine-rich repeat protein 5 0.0188451
UPF2 UPF2 regulator of nonsense transcripts homolog (yeast) 0.0188293

decreased expression

Symbol Name Standardized Value
PRKG1 protein kinase, cGMP-dependent, type I -0.0839612
JMJD1C jumonji domain containing 1C -0.0679447
PDE4D phosphodiesterase 4D, cAMP-specific -0.0635833
TSHZ2 teashirt zinc finger homeobox 2 -0.0634133
HMGA2 high mobility group AT-hook 2 -0.0614246
RPS24 ribosomal protein S24 -0.0595907
KANK1 KN motif and ankyrin repeat domains 1 -0.0505794
COL1A2 collagen, type I, alpha 2 -0.0479934
CADM2 cell adhesion molecule 2 -0.0418829
SRPK2 SRSF protein kinase 2 -0.0413835
CUX1 cut-like homeobox 1 -0.0404023
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0396518
AHNAK AHNAK nucleoprotein -0.0390217
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0386058
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0341226
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.033843
ZFAND3 zinc finger, AN1-type domain 3 -0.0336485
CANX calnexin -0.0329496
MACF1 microtubule-actin crosslinking factor 1 -0.0327603
CMSS1 cms1 ribosomal small subunit homolog (yeast) -0.0327031
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 -0.0324138
RHEB Ras homolog enriched in brain -0.0314972
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0301516
IER3 immediate early response 3 -0.0298857
NASP nuclear autoantigenic sperm protein (histone-binding) -0.0298216
MEOX2 mesenchyme homeobox 2 -0.0297955
VCL vinculin -0.0296538
KPNB1 karyopherin (importin) beta 1 -0.0296064
UBE2E1 ubiquitin-conjugating enzyme E2E 1 -0.0295836
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0286176
PTK2 protein tyrosine kinase 2 -0.0281655
TULP4 tubby like protein 4 -0.0276319
FOXC1 forkhead box C1 -0.0272092
LRPPRC leucine-rich pentatricopeptide repeat containing -0.0269195
FBXL7 F-box and leucine-rich repeat protein 7 -0.0267248
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0266562
NAP1L4 nucleosome assembly protein 1-like 4 -0.0265846
OGA O-GlcNAcase -0.0265435
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.026521
ZEB1 zinc finger E-box binding homeobox 1 -0.0258983
EIF3A eukaryotic translation initiation factor 3, subunit A -0.0252884
PRRC2B proline-rich coiled-coil 2B -0.025179
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) -0.0250775
ELOVL5 ELOVL fatty acid elongase 5 -0.0249552
RANBP17 RAN binding protein 17 -0.0246417
GNAQ guanine nucleotide binding protein (G protein), q polypeptide -0.0245231
DIAPH3 diaphanous-related formin 3 -0.0243817
ARB2A ARB2 cotranscriptional regulator A -0.0243706
SHOC2 soc-2 suppressor of clear homolog (C. elegans) -0.0239925
RNF38 ring finger protein 38 -0.0239016
PRKACB protein kinase, cAMP-dependent, catalytic, beta -0.0236693
HDAC8 histone deacetylase 8 -0.0236548
MTAP methylthioadenosine phosphorylase -0.0232404
PTMA prothymosin, alpha -0.0229973
TASOR2 transcription activation suppressor family member 2 -0.0227789
PPP6R3 protein phosphatase 6, regulatory subunit 3 -0.0227587
USP34 ubiquitin specific peptidase 34 -0.0226234
BRIP1 BRCA1 interacting protein C-terminal helicase 1 -0.0225859
DNAJC1 DnaJ (Hsp40) homolog, subfamily C, member 1 -0.0224937
TRMT11 tRNA methyltransferase 11 homolog (S. cerevisiae) -0.0224171
EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit -0.0223128
NR6A1 nuclear receptor subfamily 6, group A, member 1 -0.0223092
EPB41L5 erythrocyte membrane protein band 4.1 like 5 -0.0221747
RPS6 ribosomal protein S6 -0.0220209
STIL SCL/TAL1 interrupting locus -0.0217771
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 -0.0216499
FAF1 Fas (TNFRSF6) associated factor 1 -0.0216366
CTBP2 C-terminal binding protein 2 -0.0216207
RPLP0 ribosomal protein, large, P0 -0.0216036
DLG1 discs, large homolog 1 (Drosophila) -0.02148
AHCYL2 adenosylhomocysteinase-like 2 -0.0213639
RPS27A ribosomal protein S27a -0.02111
GMDS GDP-mannose 4,6-dehydratase -0.0209666
COA1 cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae) -0.0209271
TUBB tubulin, beta class I -0.0207374
ATAD2 ATPase family, AAA domain containing 2 -0.0205791
PAXBP1 PAX3 and PAX7 binding protein 1 -0.0205113
SENP5 SUMO1/sentrin specific peptidase 5 -0.0204515
TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) -0.0204072
DENND5A DENN/MADD domain containing 5A -0.0203718
MED13 mediator complex subunit 13 -0.0202974
FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) -0.0202919
HIP1 huntingtin interacting protein 1 -0.0201458
GOLGB1 golgin B1 -0.0199988
KIAA0232 KIAA0232 -0.0199587
GATAD2A GATA zinc finger domain containing 2A -0.0199483
MARCHF6 membrane associated ring-CH-type finger 6 -0.0199262
PDE4B phosphodiesterase 4B, cAMP-specific -0.0199029
EHMT1 euchromatic histone-lysine N-methyltransferase 1 -0.0198894
CD2AP CD2-associated protein -0.0198666
TRIO trio Rho guanine nucleotide exchange factor -0.0198185
UBE2G1 ubiquitin-conjugating enzyme E2G 1 -0.0198123
TCF12 transcription factor 12 -0.0197692
DEK DEK proto-oncogene -0.0196149
KLHL7 kelch-like family member 7 -0.0195962
FUT8 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) -0.0195927
APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 -0.0195247
VPS13D vacuolar protein sorting 13 homolog D (S. cerevisiae) -0.0194509
SLMAP sarcolemma associated protein -0.0194232
TNRC18 trinucleotide repeat containing 18 -0.0193296