Pexidartinib (hydrochloride)_KATO III Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Pexidartinib (hydrochloride) perturbation in KATO III cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Pexidartinib (hydrochloride)_KATO III drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 0.161073
SPTBN1 spectrin, beta, non-erythrocytic 1 0.108976
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0918175
DSPP dentin sialophosphoprotein 0.0736611
ST14 suppression of tumorigenicity 14 (colon carcinoma) 0.0685374
MYOF myoferlin 0.0674605
FNDC3B fibronectin type III domain containing 3B 0.0672969
HYOU1 hypoxia up-regulated 1 0.0665398
MACC1 metastasis associated in colon cancer 1 0.0619627
MBNL2 muscleblind-like splicing regulator 2 0.0618116
PDIA3 protein disulfide isomerase family A, member 3 0.0595873
CLDN4 claudin 4 0.0588007
PRELID2 PRELI domain containing 2 0.0573169
AHR aryl hydrocarbon receptor 0.0501668
TRAK1 trafficking protein, kinesin binding 1 0.0491614
STK24 serine/threonine kinase 24 0.0478602
TRIM2 tripartite motif containing 2 0.0477099
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b 0.0473279
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0467394
ANLN anillin, actin binding protein 0.0454059
LYZ lysozyme 0.0450525
RAD51B RAD51 paralog B 0.0444397
JUP junction plakoglobin 0.0438934
UMAD1 UBAP1-MVB12-associated (UMA) domain containing 1 0.0438824
TNFRSF21 tumor necrosis factor receptor superfamily, member 21 0.0437311
PRSS3 protease, serine, 3 0.0436601
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0433489
SH3RF1 SH3 domain containing ring finger 1 0.0420501
AKAP9 A kinase (PRKA) anchor protein 9 0.0419651
ARHGAP42 Rho GTPase activating protein 42 0.0412692
FTH1 ferritin, heavy polypeptide 1 0.040738
LPP LIM domain containing preferred translocation partner in lipoma 0.0404362
ESRP1 epithelial splicing regulatory protein 1 0.0401989
SAMD12 sterile alpha motif domain containing 12 0.0395106
CEMIP2 cell migration inducing hyaluronidase 2 0.0394858
RNF213 ring finger protein 213 0.0391134
MUC17 mucin 17, cell surface associated 0.0390788
NFE2L1 nuclear factor, erythroid 2-like 1 0.0388788
EXT1 exostosin glycosyltransferase 1 0.0388185
CAPN8 calpain 8 0.0386533
PCBP2 poly(rC) binding protein 2 0.0383909
PDIA6 protein disulfide isomerase family A, member 6 0.0373264
SNX9 sorting nexin 9 0.0371364
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.036393
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 0.0363178
ARHGAP26 Rho GTPase activating protein 26 0.0358336
DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 0.0346656
ATXN1 ataxin 1 0.0342844
TES testin LIM domain protein 0.0339745
ACTN4 actinin, alpha 4 0.0339467
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0339432
CALR calreticulin 0.0337974
MAL2 mal, T-cell differentiation protein 2 (gene/pseudogene) 0.0336579
LRRTM4 leucine rich repeat transmembrane neuronal 4 0.033202
ANXA11 annexin A11 0.0331839
CNKSR3 CNKSR family member 3 0.0331553
MYH9 myosin, heavy chain 9, non-muscle 0.0329535
RBM47 RNA binding motif protein 47 0.0329111
CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family) 0.0326666
LIPH lipase, member H 0.0324327
DDX60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 0.0324117
CTNND1 catenin (cadherin-associated protein), delta 1 0.0323669
CNOT1 CCR4-NOT transcription complex, subunit 1 0.032126
APLP2 amyloid beta (A4) precursor-like protein 2 0.031965
CEMIP cell migration inducing protein, hyaluronan binding 0.0314658
TNRC18 trinucleotide repeat containing 18 0.0314168
ZNF292 zinc finger protein 292 0.0310604
ADAM10 ADAM metallopeptidase domain 10 0.0310228
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0308778
MBNL1 muscleblind-like splicing regulator 1 0.0302155
CLMN calmin (calponin-like, transmembrane) 0.0302128
KLF3 Kruppel-like factor 3 (basic) 0.0300264
GOLGB1 golgin B1 0.029968
AVL9 AVL9 homolog (S. cerevisiase) 0.02984
SPAG9 sperm associated antigen 9 0.029743
ZC3H12B zinc finger CCCH-type containing 12B 0.0296133
KDM4C lysine (K)-specific demethylase 4C 0.0296015
SEL1L sel-1 suppressor of lin-12-like (C. elegans) 0.0294269
MGAM2 maltase-glucoamylase 2 (putative) 0.0294154
CTSE cathepsin E 0.0292758
EZR ezrin 0.0292109
CLINT1 clathrin interactor 1 0.0290269
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0290163
SHROOM3 shroom family member 3 0.0288941
ALPK1 alpha-kinase 1 0.0279416
COG5 component of oligomeric golgi complex 5 0.0278885
TMF1 TATA element modulatory factor 1 0.0277839
CLTC clathrin, heavy chain (Hc) 0.0277344
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.0276994
LCOR ligand dependent nuclear receptor corepressor 0.0275541
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0275341
TJP1 tight junction protein 1 0.0275331
FAT1 FAT atypical cadherin 1 0.0274791
ECT2 epithelial cell transforming 2 0.0272133
ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific ) 0.0266972
PTEN phosphatase and tensin homolog 0.0263534
UGT1A6 UDP glucuronosyltransferase 1 family, polypeptide A6 0.0261518
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 0.0260747
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) 0.0260027
MUC1 mucin 1, cell surface associated 0.0258747

decreased expression

Symbol Name Standardized Value
PTMA prothymosin, alpha -0.184039
TPT1 tumor protein, translationally-controlled 1 -0.181914
TMSB10 thymosin beta 10 -0.160344
NPSR1 neuropeptide S receptor 1 -0.106374
RPS6 ribosomal protein S6 -0.0992295
RPL35A ribosomal protein L35a -0.0880228
FTL ferritin, light polypeptide -0.0817072
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0655134
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0639236
CDK6 cyclin-dependent kinase 6 -0.0607946
RPS25 ribosomal protein S25 -0.0572905
S100A6 S100 calcium binding protein A6 -0.0559618
S100A10 S100 calcium binding protein A10 -0.0528183
RPL34 ribosomal protein L34 -0.0500237
RPLP1 ribosomal protein, large, P1 -0.0483658
AGR2 anterior gradient 2 -0.0472588
EHBP1 EH domain binding protein 1 -0.0462033
BACE2 beta-site APP-cleaving enzyme 2 -0.0459759
HLA-A major histocompatibility complex, class I, A -0.0456125
RPL38 ribosomal protein L38 -0.045042
RPL36A ribosomal protein L36a -0.0448951
SOX4 SRY (sex determining region Y)-box 4 -0.0446857
RPS8 ribosomal protein S8 -0.0436406
LCN2 lipocalin 2 -0.043431
RPL23 ribosomal protein L23 -0.0432207
RPS19 ribosomal protein S19 -0.042838
TMSB4X thymosin beta 4, X-linked -0.0423871
S100A11 S100 calcium binding protein A11 -0.0423686
ATF5 activating transcription factor 5 -0.0420514
RPS24 ribosomal protein S24 -0.0420461
RPL19 ribosomal protein L19 -0.0413923
TRPS1 trichorhinophalangeal syndrome I -0.040896
B2M beta-2-microglobulin -0.040059
HLA-B major histocompatibility complex, class I, B -0.0400351
RPS27A ribosomal protein S27a -0.0388291
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0387087
RPL26 ribosomal protein L26 -0.0380704
RPS21 ribosomal protein S21 -0.038047
MAML2 mastermind-like 2 (Drosophila) -0.0376249
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0373939
ENO1 enolase 1, (alpha) -0.037213
RPS16 ribosomal protein S16 -0.0369771
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.03646
TM4SF1 transmembrane 4 L six family member 1 -0.0358115
SLC38A1 solute carrier family 38, member 1 -0.0354702
RPS29 ribosomal protein S29 -0.0348017
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.034776
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0337359
PGK1 phosphoglycerate kinase 1 -0.0335547
CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 -0.0330244
RPL37A ribosomal protein L37a -0.0327615
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.031876
KPNB1 karyopherin (importin) beta 1 -0.0317417
ZMYND8 zinc finger, MYND-type containing 8 -0.030442
HLA-C major histocompatibility complex, class I, C -0.030393
WDR45B WD repeat domain 45B -0.0296772
HLA-E major histocompatibility complex, class I, E -0.029558
TMC5 transmembrane channel-like 5 -0.0293847
FUS FUS RNA binding protein -0.0291173
ACACA acetyl-CoA carboxylase alpha -0.0290358
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa -0.0285801
FDPS farnesyl diphosphate synthase -0.0283243
S100A9 S100 calcium binding protein A9 -0.0282223
RPL9 ribosomal protein L9 -0.0280709
RPL5 ribosomal protein L5 -0.0280571
IER3 immediate early response 3 -0.0279729
PSMA7 proteasome (prosome, macropain) subunit, alpha type, 7 -0.0277454
LMNA lamin A/C -0.0276915
EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 -0.027431
RPL7A ribosomal protein L7a -0.0268767
HMGB1 high mobility group box 1 -0.026695
CCND1 cyclin D1 -0.0266313
EIF3A eukaryotic translation initiation factor 3, subunit A -0.0265907
RPS13 ribosomal protein S13 -0.0262081
ASPH aspartate beta-hydroxylase -0.0260918
TFRC transferrin receptor -0.0260821
AHNAK AHNAK nucleoprotein -0.0257239
UBASH3B ubiquitin associated and SH3 domain containing B -0.0251764
GPATCH8 G patch domain containing 8 -0.0248191
RPS14 ribosomal protein S14 -0.0246065
IFI6 interferon, alpha-inducible protein 6 -0.0245948
H3-3B H3.3 histone B -0.0243823
EIF1 eukaryotic translation initiation factor 1 -0.024345
RPL8 ribosomal protein L8 -0.0239002
RPL12 ribosomal protein L12 -0.0235907
SEC61G Sec61 gamma subunit -0.0234814
RRBP1 ribosome binding protein 1 -0.0233631
EPCAM epithelial cell adhesion molecule -0.0227835
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0223102
RPL31 ribosomal protein L31 -0.0221713
RAI1 retinoic acid induced 1 -0.0219343
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0219024
RSL1D1 ribosomal L1 domain containing 1 -0.0217273
THOC2 THO complex 2 -0.0213492
DLC1 DLC1 Rho GTPase activating protein -0.0212068
SERF2 small EDRK-rich factor 2 -0.0211513
TRIM56 tripartite motif containing 56 -0.0211161
GNAS GNAS complex locus -0.0210525
TMEM181 transmembrane protein 181 -0.0210336
WSB1 WD repeat and SOCS box containing 1 -0.0210105