Pexidartinib (hydrochloride)_LoVo Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Pexidartinib (hydrochloride) perturbation in LoVo cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Pexidartinib (hydrochloride)_LoVo drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FAT1 FAT atypical cadherin 1 0.144318
SLCO1B3 solute carrier organic anion transporter family, member 1B3 0.1135
PABPC1 poly(A) binding protein, cytoplasmic 1 0.102798
RPS2 ribosomal protein S2 0.0941842
CALB1 calbindin 1, 28kDa 0.0932448
PKP2 plakophilin 2 0.089241
THSD4 thrombospondin, type I, domain containing 4 0.0805746
RPS12 ribosomal protein S12 0.0781411
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.07608
RAD51B RAD51 paralog B 0.075271
PRELID2 PRELI domain containing 2 0.0729373
RNF213 ring finger protein 213 0.0677661
MYOF myoferlin 0.0671176
ANXA2 annexin A2 0.0631635
ACTG1 actin gamma 1 0.0616724
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0586968
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0580886
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0569874
FOXP1 forkhead box P1 0.0555265
LDHA lactate dehydrogenase A 0.0553826
PLAC8 placenta-specific 8 0.0549859
KIF5B kinesin family member 5B 0.0526157
EEF2 eukaryotic translation elongation factor 2 0.0523046
P3H2 prolyl 3-hydroxylase 2 0.0522557
MAML2 mastermind-like 2 (Drosophila) 0.0504858
LPP LIM domain containing preferred translocation partner in lipoma 0.0497919
PRSS3 protease, serine, 3 0.0482779
PTPRK protein tyrosine phosphatase, receptor type, K 0.0480945
PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 0.0470132
EGR1 early growth response 1 0.0467378
GCNT3 glucosaminyl (N-acetyl) transferase 3, mucin type 0.0453351
CLDN4 claudin 4 0.0448563
F3 coagulation factor III (thromboplastin, tissue factor) 0.0442423
RACK1 receptor for activated C kinase 1 0.0430247
UGT1A6 UDP glucuronosyltransferase 1 family, polypeptide A6 0.0425306
MKI67 marker of proliferation Ki-67 0.0425222
MUC13 mucin 13, cell surface associated 0.0409042
EXOC4 exocyst complex component 4 0.0407504
MBNL1 muscleblind-like splicing regulator 1 0.0406213
CSTPP1 centriolar satellite-associated tubulin polyglutamylase complex regulator 1 0.0401979
SHROOM3 shroom family member 3 0.0399928
VPS13C vacuolar protein sorting 13 homolog C (S. cerevisiae) 0.0392557
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0384801
MLEC malectin 0.0380622
CCSER1 coiled-coil serine-rich protein 1 0.0379908
CEMIP cell migration inducing protein, hyaluronan binding 0.037452
FLNB filamin B, beta 0.0371946
MX1 MX dynamin-like GTPase 1 0.03716
RFX3 regulatory factor X, 3 (influences HLA class II expression) 0.0366469
EPS8 epidermal growth factor receptor pathway substrate 8 0.0363453
VCL vinculin 0.0355877
AKAP9 A kinase (PRKA) anchor protein 9 0.0344994
DSPP dentin sialophosphoprotein 0.0343659
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0341977
SLC35A3 solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 0.0339221
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0334346
PDE4D phosphodiesterase 4D, cAMP-specific 0.0325254
FHIT fragile histidine triad 0.0322169
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 0.0322002
PTPRR protein tyrosine phosphatase, receptor type, R 0.0314843
LGR5 leucine-rich repeat containing G protein-coupled receptor 5 0.0313013
ZNF292 zinc finger protein 292 0.0306644
RIN2 Ras and Rab interactor 2 0.0306306
PGK1 phosphoglycerate kinase 1 0.030544
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0304481
ABHD17C abhydrolase domain containing 17C 0.030386
PTPRG protein tyrosine phosphatase, receptor type, G 0.0297452
KLF6 Kruppel-like factor 6 0.029676
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 0.0294903
KDM4C lysine (K)-specific demethylase 4C 0.0292177
ANK3 ankyrin 3, node of Ranvier (ankyrin G) 0.0292039
EPHA2 EPH receptor A2 0.0291623
SORL1 sortilin-related receptor, L(DLR class) A repeats containing 0.0290953
FHL2 four and a half LIM domains 2 0.0290132
RPL17-C18ORF32 RPL17-C18orf32 readthrough 0.0287401
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.0286254
SLTM SAFB-like, transcription modulator 0.0285047
PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 0.0281841
NDRG1 N-myc downstream regulated 1 0.0281542
WWOX WW domain containing oxidoreductase 0.0280324
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0277434
WWC1 WW and C2 domain containing 1 0.0276889
NFIA nuclear factor I/A 0.0276542
ASCC3 activating signal cointegrator 1 complex subunit 3 0.0271363
ESYT2 extended synaptotagmin-like protein 2 0.0270544
ALCAM activated leukocyte cell adhesion molecule 0.0268987
TRIM2 tripartite motif containing 2 0.0268699
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0265791
CDH17 cadherin 17, LI cadherin (liver-intestine) 0.0264256
NFIB nuclear factor I/B 0.0264078
WNK1 WNK lysine deficient protein kinase 1 0.0254323
KLF3 Kruppel-like factor 3 (basic) 0.0248932
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0242
PPARG peroxisome proliferator-activated receptor gamma 0.0240605
HMGA1 high mobility group AT-hook 1 0.0237466
SMYD3 SET and MYND domain containing 3 0.0236611
RPS17 ribosomal protein S17 0.023652
DYNC2I1 dynein 2 intermediate chain 1 0.023497
BACE2 beta-site APP-cleaving enzyme 2 0.0234298
TLN2 talin 2 0.0232546

decreased expression

Symbol Name Standardized Value
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.180447
TPT1 tumor protein, translationally-controlled 1 -0.165348
RPS27A ribosomal protein S27a -0.129484
UBC ubiquitin C -0.120537
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.114709
PTMA prothymosin, alpha -0.101041
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0967278
AHNAK AHNAK nucleoprotein -0.082314
TMSB10 thymosin beta 10 -0.0740006
CANX calnexin -0.0670533
RPS6 ribosomal protein S6 -0.0627432
RPS23 ribosomal protein S23 -0.0612489
RPLP2 ribosomal protein, large, P2 -0.0531155
RPS13 ribosomal protein S13 -0.0518075
RPS24 ribosomal protein S24 -0.0463831
RPS21 ribosomal protein S21 -0.0436363
RPS25 ribosomal protein S25 -0.0434883
HSPA9 heat shock 70kDa protein 9 (mortalin) -0.0428005
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0419405
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.041242
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa -0.0402102
RPS11 ribosomal protein S11 -0.0380961
RPLP1 ribosomal protein, large, P1 -0.0379657
RRBP1 ribosome binding protein 1 -0.0368031
RPL8 ribosomal protein L8 -0.0363439
HLA-B major histocompatibility complex, class I, B -0.0357596
RPL34 ribosomal protein L34 -0.0352737
OGA O-GlcNAcase -0.0340565
PDIA4 protein disulfide isomerase family A, member 4 -0.0334507
HDLBP high density lipoprotein binding protein -0.0334438
IFRD1 interferon-related developmental regulator 1 -0.0334401
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0330052
KDM3A lysine (K)-specific demethylase 3A -0.0320823
ASNS asparagine synthetase (glutamine-hydrolyzing) -0.0320691
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 -0.0309761
RPL36A ribosomal protein L36a -0.0309492
RPS15 ribosomal protein S15 -0.0309345
CCNI cyclin I -0.0307822
RPL32 ribosomal protein L32 -0.0304925
FUS FUS RNA binding protein -0.0301548
RPS29 ribosomal protein S29 -0.0299356
RAB1A RAB1A, member RAS oncogene family -0.0296417
RPL38 ribosomal protein L38 -0.0271388
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 -0.0268092
RPL28 ribosomal protein L28 -0.0265214
S100A10 S100 calcium binding protein A10 -0.0259472
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0252542
SLC38A2 solute carrier family 38, member 2 -0.02513
ANKRD11 ankyrin repeat domain 11 -0.0248277
RPS6KA5 ribosomal protein S6 kinase, 90kDa, polypeptide 5 -0.0248127
CCND2 cyclin D2 -0.0247487
ZFAND3 zinc finger, AN1-type domain 3 -0.024585
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0245845
KRT8 keratin 8, type II -0.02445
IER3 immediate early response 3 -0.0243117
RPL19 ribosomal protein L19 -0.0242426
PKM pyruvate kinase, muscle -0.0242018
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0241404
MARCHF6 membrane associated ring-CH-type finger 6 -0.0233644
RPS5 ribosomal protein S5 -0.0233133
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 -0.0230651
SETD5 SET domain containing 5 -0.0228359
IRF1 interferon regulatory factor 1 -0.0227975
CTBP2 C-terminal binding protein 2 -0.0226946
UBE2H ubiquitin-conjugating enzyme E2H -0.0225615
TBCA tubulin folding cofactor A -0.0223594
SKP1 S-phase kinase-associated protein 1 -0.0223278
RPL4 ribosomal protein L4 -0.02205
KRT18 keratin 18, type I -0.021884
RPL14 ribosomal protein L14 -0.0218057
ATP5F1B ATP synthase F1 subunit beta -0.021801
AREG amphiregulin -0.0217842
COG5 component of oligomeric golgi complex 5 -0.0216498
STAU1 staufen double-stranded RNA binding protein 1 -0.0215976
UBE3C ubiquitin protein ligase E3C -0.0212277
MARS1 methionyl-tRNA synthetase 1 -0.0211625
MARK3 MAP/microtubule affinity-regulating kinase 3 -0.021058
USP3 ubiquitin specific peptidase 3 -0.0205527
CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 -0.0205185
RPS10 ribosomal protein S10 -0.0202845
RPL31 ribosomal protein L31 -0.0201016
RHEB Ras homolog enriched in brain -0.0200114
MYO5B myosin VB -0.019987
PPP1CC protein phosphatase 1, catalytic subunit, gamma isozyme -0.0199382
RPL12 ribosomal protein L12 -0.0198439
CDK12 cyclin-dependent kinase 12 -0.0198121
RPL23 ribosomal protein L23 -0.0197156
LRPPRC leucine-rich pentatricopeptide repeat containing -0.0196957
ZC3H11A zinc finger CCCH-type containing 11A -0.0195862
DSCAM Down syndrome cell adhesion molecule -0.0194375
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0192916
ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) -0.0192472
ZFC3H1 zinc finger, C3H1-type containing -0.019171
CTTN cortactin -0.0190977
NR4A1 nuclear receptor subfamily 4, group A, member 1 -0.0190075
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa -0.0189635
SPDYA speedy/RINGO cell cycle regulator family member A -0.0189612
ST13 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) -0.0189334
PCBP2 poly(rC) binding protein 2 -0.0189154
RPL6 ribosomal protein L6 -0.0188531