Pexidartinib (hydrochloride)_NCI-H460 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Pexidartinib (hydrochloride) perturbation in NCI-H460 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Pexidartinib (hydrochloride)_NCI-H460 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
NAMPT nicotinamide phosphoribosyltransferase 0.196395
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 0.16239
EFNA5 ephrin-A5 0.145943
ASPH aspartate beta-hydroxylase 0.145746
CXCL8 chemokine (C-X-C motif) ligand 8 0.117806
TXNRD1 thioredoxin reductase 1 0.108501
TRIO trio Rho guanine nucleotide exchange factor 0.0961012
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0945037
LIMCH1 LIM and calponin homology domains 1 0.0902431
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0862044
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0833641
IGFBP3 insulin-like growth factor binding protein 3 0.0765119
MYOF myoferlin 0.0745418
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0740499
GRAMD1B GRAM domain containing 1B 0.0728122
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0724424
NEK7 NIMA-related kinase 7 0.0722862
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0707594
EEF2 eukaryotic translation elongation factor 2 0.0703406
COL5A2 collagen, type V, alpha 2 0.0678195
COL8A1 collagen, type VIII, alpha 1 0.0664996
CTSC cathepsin C 0.0661049
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 0.0636875
CENPF centromere protein F, 350/400kDa 0.0632764
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0621076
EPB41L3 erythrocyte membrane protein band 4.1-like 3 0.0610468
PGK1 phosphoglycerate kinase 1 0.0590892
NRCAM neuronal cell adhesion molecule 0.0581686
PM20D1 peptidase M20 domain containing 1 0.0565357
LDHA lactate dehydrogenase A 0.0555966
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.0554388
GDA guanine deaminase 0.0534561
RTN4 reticulon 4 0.053243
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0523098
SLC39A8 solute carrier family 39 (zinc transporter), member 8 0.0509005
PSD3 pleckstrin and Sec7 domain containing 3 0.0505776
ESYT2 extended synaptotagmin-like protein 2 0.0500808
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0498625
MKI67 marker of proliferation Ki-67 0.0492599
PRRC2C proline-rich coiled-coil 2C 0.0482804
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0472224
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0454765
PCBP2 poly(rC) binding protein 2 0.0440369
FNDC3B fibronectin type III domain containing 3B 0.0430525
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0424097
PDE10A phosphodiesterase 10A 0.0422048
SET SET nuclear proto-oncogene 0.0420844
SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 0.0411618
CD109 CD109 molecule 0.0410366
FLNB filamin B, beta 0.0408979
TNPO1 transportin 1 0.0407183
ZEB2 zinc finger E-box binding homeobox 2 0.0402408
ELL2 elongation factor, RNA polymerase II, 2 0.0397527
ANXA1 annexin A1 0.0386935
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0383455
SLF1 SMC5-SMC6 complex localization factor 1 0.0376411
PTEN phosphatase and tensin homolog 0.0370452
TGFBI transforming growth factor, beta-induced, 68kDa 0.0364651
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 0.0360112
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0359398
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0355613
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.0352619
ZNF292 zinc finger protein 292 0.0348353
PTGR1 prostaglandin reductase 1 0.0344139
MFF mitochondrial fission factor 0.0342147
FAM13A family with sequence similarity 13, member A 0.0341214
COL4A5 collagen, type IV, alpha 5 0.0336713
BIRC6 baculoviral IAP repeat containing 6 0.03338
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.0332236
NDRG1 N-myc downstream regulated 1 0.032894
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.0328905
SFPQ splicing factor proline/glutamine-rich 0.0328302
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 0.0327229
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0322131
KTN1 kinectin 1 (kinesin receptor) 0.0319665
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.0319475
RPS2 ribosomal protein S2 0.0319251
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0316451
ENAH enabled homolog (Drosophila) 0.0316
TPR translocated promoter region, nuclear basket protein 0.0313937
TNFAIP3 tumor necrosis factor, alpha-induced protein 3 0.0313324
FTL ferritin, light polypeptide 0.0311717
ENO1 enolase 1, (alpha) 0.0309184
PDIA3 protein disulfide isomerase family A, member 3 0.0308205
SLC2A13 solute carrier family 2 (facilitated glucose transporter), member 13 0.0304261
COL4A6 collagen, type IV, alpha 6 0.0301466
TGFBR1 transforming growth factor, beta receptor 1 0.0299327
CARD16 caspase recruitment domain family, member 16 0.0298191
NUP58 nucleoporin 58 0.0296012
PDIA6 protein disulfide isomerase family A, member 6 0.02959
NQO1 NAD(P)H dehydrogenase, quinone 1 0.0292225
EZR ezrin 0.0291939
CSNK1A1 casein kinase 1, alpha 1 0.0291207
FTH1 ferritin, heavy polypeptide 1 0.0289693
ACTG1 actin gamma 1 0.0289483
DDIT4 DNA-damage-inducible transcript 4 0.0284829
B2M beta-2-microglobulin 0.0283674
KMT2C lysine (K)-specific methyltransferase 2C 0.0279116
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0278303
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0276665

decreased expression

Symbol Name Standardized Value
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.211873
PDE3A phosphodiesterase 3A, cGMP-inhibited -0.103837
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0731144
CDH13 cadherin 13 -0.0661101
TPT1 tumor protein, translationally-controlled 1 -0.0613261
DPP10 dipeptidyl-peptidase 10 (non-functional) -0.0584796
AUTS2 autism susceptibility candidate 2 -0.0526434
ADGRD1 adhesion G protein-coupled receptor D1 -0.0443869
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0374687
VCL vinculin -0.0373186
SMAD2 SMAD family member 2 -0.0304251
CUX1 cut-like homeobox 1 -0.0303993
RPS24 ribosomal protein S24 -0.0300825
PCBP3 poly(rC) binding protein 3 -0.0291849
PDLIM5 PDZ and LIM domain 5 -0.0291096
DHRSX dehydrogenase/reductase (SDR family) X-linked -0.028053
SMOC1 SPARC related modular calcium binding 1 -0.0260486
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0260412
ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide -0.0256467
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.0243446
RAB31 RAB31, member RAS oncogene family -0.024088
DENND1A DENN/MADD domain containing 1A -0.0240674
PTPRM protein tyrosine phosphatase, receptor type, M -0.0240053
INTS6 integrator complex subunit 6 -0.0229849
SQSTM1 sequestosome 1 -0.0226704
WARS1 tryptophanyl-tRNA synthetase 1 -0.0225864
XYLT1 xylosyltransferase I -0.0225027
SOX6 SRY (sex determining region Y)-box 6 -0.0220354
AHNAK AHNAK nucleoprotein -0.0216955
AEBP2 AE binding protein 2 -0.021638
MAP7 microtubule-associated protein 7 -0.0213877
PDE4D phosphodiesterase 4D, cAMP-specific -0.0213443
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.021063
EXT1 exostosin glycosyltransferase 1 -0.0207512
PCDH9 protocadherin 9 -0.0202465
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0202348
NCKAP5 NCK-associated protein 5 -0.0195657
NTN4 netrin 4 -0.0191271
LSAMP limbic system-associated membrane protein -0.0190175
TTC28 tetratricopeptide repeat domain 28 -0.0184419
RPH3AL rabphilin 3A-like (without C2 domains) -0.0180014
FMNL2 formin-like 2 -0.0175413
SVIL supervillin -0.0169152
NT5C2 5'-nucleotidase, cytosolic II -0.0164302
RPL31 ribosomal protein L31 -0.0162542
PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 -0.0160562
ADARB2 adenosine deaminase, RNA-specific, B2 (non-functional) -0.0158581
FAM107B family with sequence similarity 107, member B -0.0158292
SOD2 superoxide dismutase 2, mitochondrial -0.0155354
FOXK1 forkhead box K1 -0.0151506
SHANK2 SH3 and multiple ankyrin repeat domains 2 -0.015033
BMP6 bone morphogenetic protein 6 -0.0148385
CHL1 cell adhesion molecule L1-like -0.0147791
SOX4 SRY (sex determining region Y)-box 4 -0.0145182
GLCCI1 glucocorticoid induced 1 -0.0144941
AADAC arylacetamide deacetylase -0.0140367
GABRE gamma-aminobutyric acid (GABA) A receptor, epsilon -0.0139496
OXSR1 oxidative stress responsive 1 -0.0139321
FSTL4 follistatin-like 4 -0.013918
RPL38 ribosomal protein L38 -0.0137129
C9ORF153 chromosome 9 open reading frame 153 -0.0137115
PRG2 proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) -0.0136378
AKAP13 A kinase (PRKA) anchor protein 13 -0.0136254
HMGA2 high mobility group AT-hook 2 -0.0136104
THSD4 thrombospondin, type I, domain containing 4 -0.0136098
AGTPBP1 ATP/GTP binding protein 1 -0.0134389
OGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) -0.013401
PAPPA pregnancy-associated plasma protein A, pappalysin 1 -0.0133572
CLMP CXADR-like membrane protein -0.0132564
LAMB4 laminin, beta 4 -0.0131027
ZNF644 zinc finger protein 644 -0.0130567
RPL36A ribosomal protein L36a -0.0130008
SLCO1C1 solute carrier organic anion transporter family, member 1C1 -0.0128598
WNT2B wingless-type MMTV integration site family, member 2B -0.0126926
GLRX glutaredoxin (thioltransferase) -0.0125003
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase -0.0123259
P3H2 prolyl 3-hydroxylase 2 -0.0122396
MYPN myopalladin -0.012232
RPS6 ribosomal protein S6 -0.0121604
ARHGEF4 Rho guanine nucleotide exchange factor (GEF) 4 -0.0119979
RBFOX1 RNA binding protein, fox-1 homolog (C. elegans) 1 -0.0118787
RANBP17 RAN binding protein 17 -0.0118328
IGF1R insulin-like growth factor 1 receptor -0.0116491
ZBTB20 zinc finger and BTB domain containing 20 -0.0116459
DNAH11 dynein, axonemal, heavy chain 11 -0.0116271
GFPT2 glutamine-fructose-6-phosphate transaminase 2 -0.0115935
NR4A1 nuclear receptor subfamily 4, group A, member 1 -0.0115758
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0113997
MAML3 mastermind-like 3 (Drosophila) -0.0112424
BTG1 B-cell translocation gene 1, anti-proliferative -0.0112342
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0111814
FOXC1 forkhead box C1 -0.0110747
KDM4B lysine (K)-specific demethylase 4B -0.0110652
PCDH15 protocadherin-related 15 -0.010981
N4BP2L2 NEDD4 binding protein 2-like 2 -0.0109709
ARHGEF10 Rho guanine nucleotide exchange factor (GEF) 10 -0.0107817
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0107431
FNDC3A fibronectin type III domain containing 3A -0.0106841
CLIP1 CAP-GLY domain containing linker protein 1 -0.0106811
VTI1A vesicle transport through interaction with t-SNAREs 1A -0.010645