Pexidartinib (hydrochloride)_NCI-H661 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Pexidartinib (hydrochloride) perturbation in NCI-H661 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Pexidartinib (hydrochloride)_NCI-H661 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PEG10 paternally expressed 10 0.134496
ZNF292 zinc finger protein 292 0.119735
TSC22D2 TSC22 domain family, member 2 0.11384
COL5A2 collagen, type V, alpha 2 0.112313
HDAC9 histone deacetylase 9 0.0913405
EEF2 eukaryotic translation elongation factor 2 0.0872486
ZEB2 zinc finger E-box binding homeobox 2 0.083184
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.0689117
NCKAP1 NCK-associated protein 1 0.0631751
ENAH enabled homolog (Drosophila) 0.0629156
ANKRD33B ankyrin repeat domain 33B 0.0617213
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0612614
ANXA1 annexin A1 0.0579724
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0561281
KMT2C lysine (K)-specific methyltransferase 2C 0.0558334
CDH10 cadherin 10, type 2 (T2-cadherin) 0.0541019
USP25 ubiquitin specific peptidase 25 0.0526633
DST dystonin 0.047307
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0463053
PPP1R12A protein phosphatase 1, regulatory subunit 12A 0.0451804
CENPF centromere protein F, 350/400kDa 0.0450941
RPS2 ribosomal protein S2 0.0431912
PUM1 pumilio RNA-binding family member 1 0.0431082
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 0.0426524
SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase 0.0425018
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.0407034
MED13L mediator complex subunit 13-like 0.040689
ZNF608 zinc finger protein 608 0.0404991
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0401341
ANK2 ankyrin 2, neuronal 0.0400189
DOCK5 dedicator of cytokinesis 5 0.039847
ITGAV integrin, alpha V 0.0395331
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) 0.0383567
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0380348
KMT2E lysine (K)-specific methyltransferase 2E 0.0373599
RHOH ras homolog family member H 0.0370126
FOXP2 forkhead box P2 0.0360001
PLPP1 phospholipid phosphatase 1 0.0356002
DDAH1 dimethylarginine dimethylaminohydrolase 1 0.0355867
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0352606
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0352194
RBM20 RNA binding motif protein 20 0.0348491
TENM3 teneurin transmembrane protein 3 0.0345129
FLNA filamin A, alpha 0.033983
TLK1 tousled-like kinase 1 0.033522
SFPQ splicing factor proline/glutamine-rich 0.0333806
RBMS3 RNA binding motif, single stranded interacting protein 3 0.0332128
MEIS2 Meis homeobox 2 0.0329904
PCDH18 protocadherin 18 0.0326983
MKLN1 muskelin 1, intracellular mediator containing kelch motifs 0.032495
CFL2 cofilin 2 (muscle) 0.0323887
RPS12 ribosomal protein S12 0.0322718
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 0.03224
PPP4R1 protein phosphatase 4, regulatory subunit 1 0.0321817
PRPF8 pre-mRNA processing factor 8 0.0319793
CRY1 cryptochrome circadian clock 1 0.0316508
UPP1 uridine phosphorylase 1 0.030891
PFN1 profilin 1 0.0306288
NCOA2 nuclear receptor coactivator 2 0.0304349
PRTG protogenin 0.0302187
MTF2 metal response element binding transcription factor 2 0.0300458
USP9X ubiquitin specific peptidase 9, X-linked 0.0298826
PDGFC platelet derived growth factor C 0.0297176
SRRM2 serine/arginine repetitive matrix 2 0.0292514
PDS5B PDS5 cohesin associated factor B 0.0290449
STAG2 stromal antigen 2 0.028713
RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 0.0285995
PTP4A2 protein tyrosine phosphatase type IVA, member 2 0.0285492
USP3 ubiquitin specific peptidase 3 0.0283825
NEK7 NIMA-related kinase 7 0.0281539
PUM2 pumilio RNA-binding family member 2 0.0280373
UBE2D3 ubiquitin-conjugating enzyme E2D 3 0.0278845
KLF7 Kruppel-like factor 7 (ubiquitous) 0.0277823
ROCK2 Rho-associated, coiled-coil containing protein kinase 2 0.0277289
NFIB nuclear factor I/B 0.027548
MEF2C myocyte enhancer factor 2C 0.0272396
TLK2 tousled-like kinase 2 0.0269977
MACF1 microtubule-actin crosslinking factor 1 0.0269421
TNFRSF19 tumor necrosis factor receptor superfamily, member 19 0.0266645
USP53 ubiquitin specific peptidase 53 0.0265896
NR2F1 nuclear receptor subfamily 2, group F, member 1 0.0264344
SLK STE20-like kinase 0.0264176
MDFIC MyoD family inhibitor domain containing 0.0263942
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0256225
PREPL prolyl endopeptidase-like 0.0256115
NEBL nebulette 0.0254111
TPM3 tropomyosin 3 0.0253366
PDIA3 protein disulfide isomerase family A, member 3 0.0253172
GPC4 glypican 4 0.0252717
FAR1 fatty acyl CoA reductase 1 0.0250671
SEMA3D sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D 0.0250077
SET SET nuclear proto-oncogene 0.0249922
FAT1 FAT atypical cadherin 1 0.0249686
OSBPL9 oxysterol binding protein-like 9 0.0249005
RAD23B RAD23 homolog B (S. cerevisiae) 0.0248886
TJP1 tight junction protein 1 0.0248098
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0243679
UTRN utrophin 0.0243213
FOXJ3 forkhead box J3 0.0241123
CHD7 chromodomain helicase DNA binding protein 7 0.0237348

decreased expression

Symbol Name Standardized Value
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.210268
PTMA prothymosin, alpha -0.157331
VIM vimentin -0.100016
AHNAK AHNAK nucleoprotein -0.0927848
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.086141
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.084059
TMSB10 thymosin beta 10 -0.0775679
RPL19 ribosomal protein L19 -0.072425
RPS16 ribosomal protein S16 -0.065291
TPT1 tumor protein, translationally-controlled 1 -0.0644095
MDK midkine (neurite growth-promoting factor 2) -0.0619044
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0548561
H1-0 H1.0 linker histone -0.0499182
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0496556
CADM2 cell adhesion molecule 2 -0.0482908
HMGB1 high mobility group box 1 -0.0479602
NOP58 NOP58 ribonucleoprotein -0.0477489
BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2 -0.0464541
MAP4 microtubule-associated protein 4 -0.0443592
ATP5F1B ATP synthase F1 subunit beta -0.0434708
ZFPM2 zinc finger protein, FOG family member 2 -0.042907
SETD5 SET domain containing 5 -0.0423605
RPL34 ribosomal protein L34 -0.0420812
RPS6 ribosomal protein S6 -0.0420012
TMSB4X thymosin beta 4, X-linked -0.0408472
RPS21 ribosomal protein S21 -0.0401131
RPL35A ribosomal protein L35a -0.0389892
FTL ferritin, light polypeptide -0.0383962
PSMA7 proteasome (prosome, macropain) subunit, alpha type, 7 -0.037572
RPL31 ribosomal protein L31 -0.0373621
EMP1 epithelial membrane protein 1 -0.0352991
BRAF B-Raf proto-oncogene, serine/threonine kinase -0.0330344
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0321868
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0320918
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0320734
RPS8 ribosomal protein S8 -0.0319133
EIF1 eukaryotic translation initiation factor 1 -0.0314323
DEK DEK proto-oncogene -0.0313045
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0306605
BRDT bromodomain, testis-specific -0.030445
KPNB1 karyopherin (importin) beta 1 -0.0298534
GNAS GNAS complex locus -0.0287291
CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 -0.0284402
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.0275338
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric -0.0274935
ZBTB20 zinc finger and BTB domain containing 20 -0.0274714
ERC2 ELKS/RAB6-interacting/CAST family member 2 -0.0272565
EAPP E2F-associated phosphoprotein -0.0270859
RPS24 ribosomal protein S24 -0.0269843
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0268126
PCLO piccolo presynaptic cytomatrix protein -0.0266747
BIRC6 baculoviral IAP repeat containing 6 -0.0263779
RPS25 ribosomal protein S25 -0.0263466
RSF1 remodeling and spacing factor 1 -0.0263338
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 -0.0261326
ANKIB1 ankyrin repeat and IBR domain containing 1 -0.026132
RPL18 ribosomal protein L18 -0.0260687
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0258343
RPS27A ribosomal protein S27a -0.0256702
BBX bobby sox homolog (Drosophila) -0.0256645
ARID4B AT rich interactive domain 4B (RBP1-like) -0.0253772
IARS1 isoleucyl-tRNA synthetase 1 -0.0252469
KIAA1958 KIAA1958 -0.0252215
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa -0.0251049
CANX calnexin -0.0250464
RPL36A ribosomal protein L36a -0.0250111
PRR11 proline rich 11 -0.0248689
SEC31A SEC31 homolog A (S. cerevisiae) -0.0247984
STAU1 staufen double-stranded RNA binding protein 1 -0.0245816
ZNF385D zinc finger protein 385D -0.0245528
PDIA4 protein disulfide isomerase family A, member 4 -0.0245001
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon -0.0244703
HDLBP high density lipoprotein binding protein -0.0242274
ZNF609 zinc finger protein 609 -0.0241878
SIPA1L3 signal-induced proliferation-associated 1 like 3 -0.0241419
RPLP2 ribosomal protein, large, P2 -0.0239497
GPATCH8 G patch domain containing 8 -0.0239371
ASTN2 astrotactin 2 -0.0238232
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.0236776
B2M beta-2-microglobulin -0.0235916
ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) -0.0234446
DPPA4 developmental pluripotency associated 4 -0.0232777
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 -0.0232703
SCFD1 sec1 family domain containing 1 -0.023267
RPL12 ribosomal protein L12 -0.0229884
GOSR1 golgi SNAP receptor complex member 1 -0.022886
RHOA ras homolog family member A -0.0227718
INTS6 integrator complex subunit 6 -0.0227714
UBR4 ubiquitin protein ligase E3 component n-recognin 4 -0.0226304
RPS11 ribosomal protein S11 -0.0223063
TPM4 tropomyosin 4 -0.0222571
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0222311
NDRG1 N-myc downstream regulated 1 -0.0222268
THRAP3 thyroid hormone receptor associated protein 3 -0.0221182
RSL1D1 ribosomal L1 domain containing 1 -0.0220871
SGO2 shugoshin 2 -0.0220369
RPL11 ribosomal protein L11 -0.0220211
PPIB peptidylprolyl isomerase B (cyclophilin B) -0.0219289
S100A10 S100 calcium binding protein A10 -0.0219219
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0218834