Pexidartinib (hydrochloride)_SHP-77 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Pexidartinib (hydrochloride) perturbation in SHP-77 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Pexidartinib (hydrochloride)_SHP-77 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PDE10A phosphodiesterase 10A 0.323546
ADARB2 adenosine deaminase, RNA-specific, B2 (non-functional) 0.161679
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.135938
PEG10 paternally expressed 10 0.126822
NALF1 NALCN channel auxiliary factor 1 0.104728
SGIP1 SH3-domain GRB2-like (endophilin) interacting protein 1 0.0915199
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0753138
CAMK1D calcium/calmodulin-dependent protein kinase ID 0.0731002
NCKAP5 NCK-associated protein 5 0.0628984
PDE4D phosphodiesterase 4D, cAMP-specific 0.0619784
CENPF centromere protein F, 350/400kDa 0.0577156
WWOX WW domain containing oxidoreductase 0.0561724
RAD51B RAD51 paralog B 0.0560417
RIMS2 regulating synaptic membrane exocytosis 2 0.0550805
ESRRG estrogen-related receptor gamma 0.0539767
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0523376
PDE4B phosphodiesterase 4B, cAMP-specific 0.0516767
MBNL2 muscleblind-like splicing regulator 2 0.0506462
TENM1 teneurin transmembrane protein 1 0.0505095
SNTG1 syntrophin, gamma 1 0.0504937
NDRG1 N-myc downstream regulated 1 0.0495152
PCSK1 proprotein convertase subtilisin/kexin type 1 0.0490311
CNTNAP2 contactin associated protein-like 2 0.0488976
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) 0.0488187
IGFBP5 insulin-like growth factor binding protein 5 0.048703
SMYD3 SET and MYND domain containing 3 0.0468402
LSAMP limbic system-associated membrane protein 0.0446101
RNF213 ring finger protein 213 0.0435155
NAV1 neuron navigator 1 0.0431854
KCND2 potassium channel, voltage gated Shal related subfamily D, member 2 0.0429449
MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 0.04092
MCTP1 multiple C2 domains, transmembrane 1 0.0398146
EYA2 EYA transcriptional coactivator and phosphatase 2 0.0397732
EPHA6 EPH receptor A6 0.0394733
ASPH aspartate beta-hydroxylase 0.0389945
EGLN3 egl-9 family hypoxia-inducible factor 3 0.0382824
ADAR adenosine deaminase, RNA-specific 0.0372377
NRG1 neuregulin 1 0.0370838
SMAD9 SMAD family member 9 0.0368423
ZC3H12B zinc finger CCCH-type containing 12B 0.0366337
LIMCH1 LIM and calponin homology domains 1 0.0359183
TOX thymocyte selection-associated high mobility group box 0.034665
RORA RAR-related orphan receptor A 0.0341011
SOBP sine oculis binding protein homolog (Drosophila) 0.0336164
FHIT fragile histidine triad 0.0335311
KCNMB3 potassium channel subfamily M regulatory beta subunit 3 0.0332382
SMC1A structural maintenance of chromosomes 1A 0.0328035
ZNF407 zinc finger protein 407 0.0325805
AGBL4 ATP/GTP binding protein-like 4 0.0325011
SET SET nuclear proto-oncogene 0.0322738
RIT2 Ras-like without CAAX 2 0.0321643
EPHA3 EPH receptor A3 0.032003
DTNA dystrobrevin, alpha 0.0317792
HMGB3 high mobility group box 3 0.0317155
NFIB nuclear factor I/B 0.0314158
GPC6 glypican 6 0.0303479
FAT1 FAT atypical cadherin 1 0.0301323
AP1S3 adaptor-related protein complex 1, sigma 3 subunit 0.0298958
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit 0.0294912
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.0294746
EEF2 eukaryotic translation elongation factor 2 0.0291975
NRXN1 neurexin 1 0.0290637
ENO1 enolase 1, (alpha) 0.0288313
STXBP5 syntaxin binding protein 5 (tomosyn) 0.0287674
NLGN1 neuroligin 1 0.0285162
FAM13A family with sequence similarity 13, member A 0.0281173
PIAS2 protein inhibitor of activated STAT, 2 0.0280405
MACROD2 MACRO domain containing 2 0.0268978
EFNA5 ephrin-A5 0.026677
RIGI RNA sensor RIG-I 0.0262911
PCDH9 protocadherin 9 0.0259728
NELL1 NEL-like 1 (chicken) 0.0258169
GRB10 growth factor receptor-bound protein 10 0.0255245
FKBP9 FK506 binding protein 9, 63 kDa 0.0251981
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.02505
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0250137
YEATS2 YEATS domain containing 2 0.0245586
OAS3 2'-5'-oligoadenylate synthetase 3, 100kDa 0.0239127
ZBTB20 zinc finger and BTB domain containing 20 0.0236876
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.023656
PRELID2 PRELI domain containing 2 0.0234231
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 0.0232686
PEX5L peroxisomal biogenesis factor 5-like 0.0231846
KTN1 kinectin 1 (kinesin receptor) 0.0231434
SYT1 synaptotagmin I 0.0230626
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0230334
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0229947
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 0.0229426
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.022807
SPIDR scaffolding protein involved in DNA repair 0.0220421
ASCL1 achaete-scute family bHLH transcription factor 1 0.021978
MAP1B microtubule-associated protein 1B 0.0218801
GPRIN3 GPRIN family member 3 0.0217887
DACH1 dachshund family transcription factor 1 0.0216648
SLF1 SMC5-SMC6 complex localization factor 1 0.0214951
KCTD8 potassium channel tetramerization domain containing 8 0.0213073
ADGRL2 adhesion G protein-coupled receptor L2 0.021261
DTL denticleless E3 ubiquitin protein ligase homolog (Drosophila) 0.0211862
VEGFA vascular endothelial growth factor A 0.0211645
DST dystonin 0.0211601

decreased expression

Symbol Name Standardized Value
PTMA prothymosin, alpha -0.187671
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.123156
FTL ferritin, light polypeptide -0.0616133
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0584909
CALCA calcitonin-related polypeptide alpha -0.0578458
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0531278
UBB ubiquitin B -0.0441715
RPS6 ribosomal protein S6 -0.0426114
RPL8 ribosomal protein L8 -0.0408931
RPLP1 ribosomal protein, large, P1 -0.0397467
RPS21 ribosomal protein S21 -0.0397422
CHGA chromogranin A -0.0370425
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.03394
S100A9 S100 calcium binding protein A9 -0.0334254
RPS27A ribosomal protein S27a -0.032109
FOXC1 forkhead box C1 -0.0319994
NOP58 NOP58 ribonucleoprotein -0.0319935
H1-0 H1.0 linker histone -0.0316393
RPL37 ribosomal protein L37 -0.0316387
RPL11 ribosomal protein L11 -0.0308555
NR4A1 nuclear receptor subfamily 4, group A, member 1 -0.0308036
SQSTM1 sequestosome 1 -0.0303295
RPS25 ribosomal protein S25 -0.029919
MT2A metallothionein 2A -0.0291955
RPL5 ribosomal protein L5 -0.0288001
TRIO trio Rho guanine nucleotide exchange factor -0.0286351
WAC WW domain containing adaptor with coiled-coil -0.0284793
SF3B2 splicing factor 3b, subunit 2, 145kDa -0.0280783
INHBA inhibin, beta A -0.027972
RRBP1 ribosome binding protein 1 -0.0274296
RPL19 ribosomal protein L19 -0.0272677
GNAS GNAS complex locus -0.0263657
FUS FUS RNA binding protein -0.0262781
MARCHF6 membrane associated ring-CH-type finger 6 -0.026011
COL22A1 collagen, type XXII, alpha 1 -0.0257207
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0257129
RPL12 ribosomal protein L12 -0.0257019
RPL7A ribosomal protein L7a -0.0256503
SSBP2 single-stranded DNA binding protein 2 -0.025633
RPL6 ribosomal protein L6 -0.0251892
FNDC3A fibronectin type III domain containing 3A -0.0251534
CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 -0.0249093
RPL23 ribosomal protein L23 -0.0244706
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0241755
PITPNM2 phosphatidylinositol transfer protein, membrane-associated 2 -0.0241175
RPS8 ribosomal protein S8 -0.0238658
RPS19 ribosomal protein S19 -0.0238162
TPM4 tropomyosin 4 -0.0234065
RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 -0.0232611
GARS1 glycyl-tRNA synthetase 1 -0.023156
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0230981
RPS3 ribosomal protein S3 -0.0229912
JAM3 junctional adhesion molecule 3 -0.022691
DEK DEK proto-oncogene -0.0226511
LMNA lamin A/C -0.0223589
HSPH1 heat shock 105kDa/110kDa protein 1 -0.022259
EIF4A1 eukaryotic translation initiation factor 4A1 -0.0221316
RPS29 ribosomal protein S29 -0.0219269
NR4A3 nuclear receptor subfamily 4, group A, member 3 -0.0219146
TMSB10 thymosin beta 10 -0.021913
SINHCAF SIN3-HDAC complex associated factor -0.0218626
RSL1D1 ribosomal L1 domain containing 1 -0.0217204
ATP5F1B ATP synthase F1 subunit beta -0.0216705
SOX4 SRY (sex determining region Y)-box 4 -0.0216326
RPL36 ribosomal protein L36 -0.0215706
NAMPT nicotinamide phosphoribosyltransferase -0.0215584
RPS5 ribosomal protein S5 -0.0214581
RPL31 ribosomal protein L31 -0.0214184
FAM162A family with sequence similarity 162, member A -0.0212983
RPL38 ribosomal protein L38 -0.0212413
RPL32 ribosomal protein L32 -0.0209336
RPS11 ribosomal protein S11 -0.0207817
SEZ6L2 seizure related 6 homolog (mouse)-like 2 -0.020737
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A -0.0204703
YBX1 Y box binding protein 1 -0.0204336
RPL37A ribosomal protein L37a -0.0204311
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0203985
RPL7 ribosomal protein L7 -0.0203811
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon -0.0201774
RAD21 RAD21 homolog (S. pombe) -0.0200761
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha -0.0198824
RHEB Ras homolog enriched in brain -0.01987
RPS15 ribosomal protein S15 -0.0198092
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0194561
EIF1 eukaryotic translation initiation factor 1 -0.0194118
SOD2 superoxide dismutase 2, mitochondrial -0.0193134
CSTPP1 centriolar satellite-associated tubulin polyglutamylase complex regulator 1 -0.0191362
FOS FBJ murine osteosarcoma viral oncogene homolog -0.0190468
RPLP2 ribosomal protein, large, P2 -0.0190275
JUN jun proto-oncogene -0.0190246
PPP6R3 protein phosphatase 6, regulatory subunit 3 -0.019005
RPL35 ribosomal protein L35 -0.0189257
BHLHE40 basic helix-loop-helix family, member e40 -0.0184534
HMGB1 high mobility group box 1 -0.0184147
TOMM20 translocase of outer mitochondrial membrane 20 homolog (yeast) -0.0184042
TUFM Tu translation elongation factor, mitochondrial -0.0183739
HSPB1 heat shock 27kDa protein 1 -0.0183689
IFRD1 interferon-related developmental regulator 1 -0.0183526
SERF2 small EDRK-rich factor 2 -0.0183015
KPNB1 karyopherin (importin) beta 1 -0.0182738