Phenytoin (sodium)_SHP-77 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Phenytoin (sodium) perturbation in SHP-77 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Phenytoin (sodium)_SHP-77 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
NDRG1 N-myc downstream regulated 1 0.231418
VGF VGF nerve growth factor inducible 0.13941
PDE10A phosphodiesterase 10A 0.132291
SMOC1 SPARC related modular calcium binding 1 0.0862795
CHGB chromogranin B 0.077617
FAM13A family with sequence similarity 13, member A 0.0717584
GRB10 growth factor receptor-bound protein 10 0.0657375
MYH9 myosin, heavy chain 9, non-muscle 0.0656448
LOC112694756 uncharaterized LOC112694756 0.0621304
MAP1B microtubule-associated protein 1B 0.0577118
IGFBP2 insulin-like growth factor binding protein 2, 36kDa 0.0576652
NRG1 neuregulin 1 0.0574659
STC1 stanniocalcin 1 0.0550267
PAEP progestagen-associated endometrial protein 0.0549131
SNAP25 synaptosomal-associated protein, 25kDa 0.0536988
HMGB3 high mobility group box 3 0.0503026
CPE carboxypeptidase E 0.0477337
CACNA1D calcium channel, voltage-dependent, L type, alpha 1D subunit 0.0476606
MPRIP myosin phosphatase Rho interacting protein 0.0464827
PDIA6 protein disulfide isomerase family A, member 6 0.0460553
MCL1 myeloid cell leukemia 1 0.0459966
NALF1 NALCN channel auxiliary factor 1 0.0455835
CHD7 chromodomain helicase DNA binding protein 7 0.0448169
RTN4 reticulon 4 0.0433775
NAV2 neuron navigator 2 0.0409319
DGKD diacylglycerol kinase, delta 130kDa 0.0408071
ENO1 enolase 1, (alpha) 0.0404501
PSD3 pleckstrin and Sec7 domain containing 3 0.0402989
SLC6A6 solute carrier family 6 (neurotransmitter transporter), member 6 0.0402051
TPM3 tropomyosin 3 0.0387262
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0378514
PCBP2 poly(rC) binding protein 2 0.0378041
EEF2 eukaryotic translation elongation factor 2 0.037634
NUP58 nucleoporin 58 0.0375574
IGFBP5 insulin-like growth factor binding protein 5 0.0375022
WDR45B WD repeat domain 45B 0.0374341
ELL2 elongation factor, RNA polymerase II, 2 0.0367598
FAT1 FAT atypical cadherin 1 0.0364837
SCG2 secretogranin II 0.0357675
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0352849
CHD1L chromodomain helicase DNA binding protein 1-like 0.0352574
PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 0.0348638
FKBP9 FK506 binding protein 9, 63 kDa 0.0341563
GSE1 Gse1 coiled-coil protein 0.0337987
SGIP1 SH3-domain GRB2-like (endophilin) interacting protein 1 0.0334821
TPD52 tumor protein D52 0.0328428
ACTG1 actin gamma 1 0.0326258
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0324928
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0324689
NUMA1 nuclear mitotic apparatus protein 1 0.0321859
POTEF POTE ankyrin domain family, member F 0.0320918
APLP2 amyloid beta (A4) precursor-like protein 2 0.0319493
SINHCAF SIN3-HDAC complex associated factor 0.0317771
MBNL2 muscleblind-like splicing regulator 2 0.0316422
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0315312
MSN moesin 0.0314703
SREBF2 sterol regulatory element binding transcription factor 2 0.0313734
PCSK1 proprotein convertase subtilisin/kexin type 1 0.0313094
TXNRD1 thioredoxin reductase 1 0.0312388
SLC7A5 solute carrier family 7 (amino acid transporter light chain, L system), member 5 0.0307124
PELI2 pellino E3 ubiquitin protein ligase family member 2 0.0303038
CELF4 CUGBP, Elav-like family member 4 0.0300765
TMEM255B transmembrane protein 255B 0.0297986
RPTOR regulatory associated protein of MTOR, complex 1 0.0296795
VEGFA vascular endothelial growth factor A 0.0294391
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0292284
SSBP2 single-stranded DNA binding protein 2 0.0291567
RAPGEF5 Rap guanine nucleotide exchange factor (GEF) 5 0.0289678
DOCK5 dedicator of cytokinesis 5 0.0289133
LRP5 low density lipoprotein receptor-related protein 5 0.0283381
NBAS neuroblastoma amplified sequence 0.0282839
ADARB2 adenosine deaminase, RNA-specific, B2 (non-functional) 0.027914
SCARB2 scavenger receptor class B, member 2 0.027609
RPL3 ribosomal protein L3 0.0272279
NCKAP5 NCK-associated protein 5 0.0270669
AHR aryl hydrocarbon receptor 0.0268777
TSPYL2 TSPY-like 2 0.0265531
TRAPPC9 trafficking protein particle complex 9 0.0256471
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0254496
CAMK1D calcium/calmodulin-dependent protein kinase ID 0.024896
PRPF8 pre-mRNA processing factor 8 0.0248331
F2RL3 coagulation factor II (thrombin) receptor-like 3 0.0236776
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0236062
BACE2 beta-site APP-cleaving enzyme 2 0.0236005
ERRFI1 ERBB receptor feedback inhibitor 1 0.0234713
NCAM1 neural cell adhesion molecule 1 0.0234681
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0232666
UBC ubiquitin C 0.0230716
AP1S3 adaptor-related protein complex 1, sigma 3 subunit 0.0229431
TMSB4X thymosin beta 4, X-linked 0.0228635
PCCA propionyl CoA carboxylase, alpha polypeptide 0.0228147
GNPDA1 glucosamine-6-phosphate deaminase 1 0.0227116
ADARB1 adenosine deaminase, RNA-specific, B1 0.022583
UBA6 ubiquitin-like modifier activating enzyme 6 0.0225824
NAMPT nicotinamide phosphoribosyltransferase 0.0225558
RORA RAR-related orphan receptor A 0.0225133
FTH1 ferritin, heavy polypeptide 1 0.0223754
SVIL supervillin 0.0222762
SSBP3 single stranded DNA binding protein 3 0.0222063
KMT5B lysine methyltransferase 5B 0.022131

decreased expression

Symbol Name Standardized Value
PTMA prothymosin, alpha -0.212913
FTL ferritin, light polypeptide -0.0782694
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0778669
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0664395
RPL37A ribosomal protein L37a -0.064609
TENM1 teneurin transmembrane protein 1 -0.0623989
RPL26 ribosomal protein L26 -0.050339
RPS21 ribosomal protein S21 -0.0485246
RPS8 ribosomal protein S8 -0.0484955
RPL23 ribosomal protein L23 -0.0457445
NIPBL Nipped-B homolog (Drosophila) -0.0448463
MT2A metallothionein 2A -0.0441531
RPS6 ribosomal protein S6 -0.0420511
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0411308
GMDS GDP-mannose 4,6-dehydratase -0.0386766
NOVA1 neuro-oncological ventral antigen 1 -0.0383435
CENPF centromere protein F, 350/400kDa -0.0383191
RPL12 ribosomal protein L12 -0.0382851
RPS19 ribosomal protein S19 -0.0379736
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0370171
GOLGB1 golgin B1 -0.0368995
CDH12 cadherin 12, type 2 (N-cadherin 2) -0.0367524
RPS3 ribosomal protein S3 -0.0367428
SMC4 structural maintenance of chromosomes 4 -0.0354607
PEG10 paternally expressed 10 -0.0348741
RPL19 ribosomal protein L19 -0.0347432
PNISR PNN-interacting serine/arginine-rich protein -0.0343284
FNDC3A fibronectin type III domain containing 3A -0.033542
SYT1 synaptotagmin I -0.0330899
TMSB10 thymosin beta 10 -0.0330425
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0325211
RPS16 ribosomal protein S16 -0.0324165
GLCCI1 glucocorticoid induced 1 -0.0313466
KNL1 kinetochore scaffold 1 -0.0309922
GPC5 glypican 5 -0.0304683
CACNA2D1 calcium channel, voltage-dependent, alpha 2/delta subunit 1 -0.0304048
MKI67 marker of proliferation Ki-67 -0.0299336
RPL31 ribosomal protein L31 -0.0298296
BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB -0.0296228
RPL36 ribosomal protein L36 -0.0293926
RPL30 ribosomal protein L30 -0.0293723
RAD21 RAD21 homolog (S. pombe) -0.0292981
NAP1L1 nucleosome assembly protein 1-like 1 -0.029283
RPS27A ribosomal protein S27a -0.029202
PSMA7 proteasome (prosome, macropain) subunit, alpha type, 7 -0.0289425
ARID4B AT rich interactive domain 4B (RBP1-like) -0.0289412
TNRC6C trinucleotide repeat containing 6C -0.0285582
HMGB1 high mobility group box 1 -0.0285145
RPLP1 ribosomal protein, large, P1 -0.0284951
RPL34 ribosomal protein L34 -0.0284345
FOXC1 forkhead box C1 -0.028245
SNTG1 syntrophin, gamma 1 -0.0282366
SF3B2 splicing factor 3b, subunit 2, 145kDa -0.0281965
GPR75-ASB3 GPR75-ASB3 readthrough -0.0281616
KCTD8 potassium channel tetramerization domain containing 8 -0.027777
H1-0 H1.0 linker histone -0.027677
INHBA inhibin, beta A -0.0275784
RPL35 ribosomal protein L35 -0.0271413
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon -0.0270853
RPL35A ribosomal protein L35a -0.0266792
RPL37 ribosomal protein L37 -0.0266466
SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 -0.0265688
RPL38 ribosomal protein L38 -0.0261305
TENT5A terminal nucleotidyltransferase 5A -0.0260268
KIAA1958 KIAA1958 -0.025893
VPS45 vacuolar protein sorting 45 homolog (S. cerevisiae) -0.0257902
RPS12 ribosomal protein S12 -0.0255563
RACK1 receptor for activated C kinase 1 -0.0254084
ATP5F1E ATP synthase F1 subunit epsilon -0.0253161
PBK PDZ binding kinase -0.0252163
G2E3 G2/M-phase specific E3 ubiquitin protein ligase -0.0251998
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) -0.0250908
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0248357
RPS27 ribosomal protein S27 -0.0245552
HMGB2 high mobility group box 2 -0.0243708
PDE4D phosphodiesterase 4D, cAMP-specific -0.0243259
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.0241229
BPTF bromodomain PHD finger transcription factor -0.0238248
RPL5 ribosomal protein L5 -0.0237278
MBD5 methyl-CpG binding domain protein 5 -0.0235912
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0235019
ZNF804A zinc finger protein 804A -0.0234851
MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 -0.0230076
RIMS2 regulating synaptic membrane exocytosis 2 -0.0227755
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0227283
XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) -0.022637
KCNH7 potassium channel, voltage gated eag related subfamily H, member 7 -0.0225705
SGO2 shugoshin 2 -0.0225659
KCND2 potassium channel, voltage gated Shal related subfamily D, member 2 -0.0218085
ASXL1 additional sex combs like transcriptional regulator 1 -0.0217933
RPL36AL ribosomal protein L36a-like -0.0217476
CDK13 cyclin-dependent kinase 13 -0.0215548
ZSWIM5 zinc finger, SWIM-type containing 5 -0.0213947
RPL11 ribosomal protein L11 -0.0209
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0207464
PCM1 pericentriolar material 1 -0.0206437
KNTC1 kinetochore associated 1 -0.0205776
CANX calnexin -0.0204539
RPS29 ribosomal protein S29 -0.0203973
RPS25 ribosomal protein S25 -0.0203587