Phenytoin (sodium)_SK-MEL-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Phenytoin (sodium) perturbation in SK-MEL-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Phenytoin (sodium)_SK-MEL-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FN1 fibronectin 1 0.19667
FNDC3B fibronectin type III domain containing 3B 0.067774
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0606126
IGFBP3 insulin-like growth factor binding protein 3 0.0494546
NDRG1 N-myc downstream regulated 1 0.0474453
SREBF2 sterol regulatory element binding transcription factor 2 0.0448286
AKAP12 A kinase (PRKA) anchor protein 12 0.0434741
IL1RAP interleukin 1 receptor accessory protein 0.0419689
FLNA filamin A, alpha 0.0407735
PRELID2 PRELI domain containing 2 0.0400584
EIF4H eukaryotic translation initiation factor 4H 0.0400293
LOC112694756 uncharaterized LOC112694756 0.0384145
PLEC plectin 0.0377257
NAV2 neuron navigator 2 0.0365294
MSI2 musashi RNA-binding protein 2 0.0364967
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 0.0324267
LINGO2 leucine rich repeat and Ig domain containing 2 0.0317265
CLIP4 CAP-GLY domain containing linker protein family, member 4 0.0310368
BACE2 beta-site APP-cleaving enzyme 2 0.0308098
SMAD3 SMAD family member 3 0.0296778
KAZN kazrin, periplakin interacting protein 0.029424
RPL3 ribosomal protein L3 0.0267901
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0248451
FHIP1A FHF complex subunit HOOK interacting protein 1A 0.023727
CABIN1 calcineurin binding protein 1 0.0231637
BHLHE40 basic helix-loop-helix family, member e40 0.022931
OGT O-linked N-acetylglucosamine (GlcNAc) transferase 0.022796
INPP5F inositol polyphosphate-5-phosphatase F 0.0227523
AFDN afadin, adherens junction formation factor 0.0226069
FMNL2 formin-like 2 0.0222895
ZMIZ1 zinc finger, MIZ-type containing 1 0.0220384
SEPTIN9 septin 9 0.0218483
YEATS2 YEATS domain containing 2 0.0215913
HSPA8 heat shock 70kDa protein 8 0.0204311
ST6GAL1 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 0.0200354
PRRC2A proline-rich coiled-coil 2A 0.0198611
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0198593
MMP12 matrix metallopeptidase 12 0.0198029
EGLN1 egl-9 family hypoxia-inducible factor 1 0.0193809
SND1 staphylococcal nuclease and tudor domain containing 1 0.0191943
CNIH3 cornichon family AMPA receptor auxiliary protein 3 0.0187972
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 0.0187166
SLC39A11 solute carrier family 39, member 11 0.0184243
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0178528
EYA1 EYA transcriptional coactivator and phosphatase 1 0.0175961
CD109 CD109 molecule 0.0174823
HLA-C major histocompatibility complex, class I, C 0.0173252
DIP2C DIP2 disco-interacting protein 2 homolog C (Drosophila) 0.017259
IGF1R insulin-like growth factor 1 receptor 0.0172475
DST dystonin 0.0167996
NGLY1 N-glycanase 1 0.0164549
FAM219A family with sequence similarity 219, member A 0.0163538
TNNC1 troponin C type 1 (slow) 0.0160765
KLF7 Kruppel-like factor 7 (ubiquitous) 0.0160716
FLNB filamin B, beta 0.0160458
AP2M1 adaptor-related protein complex 2, mu 1 subunit 0.0158931
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.015886
SOX10 SRY (sex determining region Y)-box 10 0.0155925
ARRDC3 arrestin domain containing 3 0.0155011
DENND1A DENN/MADD domain containing 1A 0.0154239
TCOF1 Treacher Collins-Franceschetti syndrome 1 0.0152255
WIPI1 WD repeat domain, phosphoinositide interacting 1 0.0150367
GALNT18 polypeptide N-acetylgalactosaminyltransferase 18 0.0149717
FHIT fragile histidine triad 0.0147892
SLC6A6 solute carrier family 6 (neurotransmitter transporter), member 6 0.0146469
CA8 carbonic anhydrase VIII 0.0144159
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0139844
TRIM33 tripartite motif containing 33 0.0139746
GALNT2 polypeptide N-acetylgalactosaminyltransferase 2 0.0137908
HPCAL1 hippocalcin-like 1 0.0137455
TUBB tubulin, beta class I 0.01365
PRKCSH protein kinase C substrate 80K-H 0.0135743
MTR 5-methyltetrahydrofolate-homocysteine methyltransferase 0.0134828
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0134583
HMG20B high mobility group 20B 0.0133049
ANGPTL4 angiopoietin-like 4 0.0132553
PPFIA4 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 0.0132114
ARHGAP21 Rho GTPase activating protein 21 0.013178
MIDEAS mitotic deacetylase associated SANT domain protein 0.0131584
CDH13 cadherin 13 0.0130685
FRMD4A FERM domain containing 4A 0.0128859
FYN FYN proto-oncogene, Src family tyrosine kinase 0.0128783
BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide 0.012742
ARHGEF11 Rho guanine nucleotide exchange factor (GEF) 11 0.0126824
CEP250 centrosomal protein 250kDa 0.0126511
ITGB5 integrin, beta 5 0.0125701
CRYBG3 beta-gamma crystallin domain containing 3 0.0124438
LEF1 lymphoid enhancer-binding factor 1 0.012223
PRRC2B proline-rich coiled-coil 2B 0.0121458
NDUFA10 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa 0.0120263
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.0119271
MEGF6 multiple EGF-like-domains 6 0.0116862
SLC25A6 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 0.0116553
C1ORF21 chromosome 1 open reading frame 21 0.0113432
UBE2G2 ubiquitin-conjugating enzyme E2G 2 0.0113277
TMEM51 transmembrane protein 51 0.0112941
IMPDH2 IMP (inosine 5'-monophosphate) dehydrogenase 2 0.0112319
ESYT2 extended synaptotagmin-like protein 2 0.0112209
AHNAK2 AHNAK nucleoprotein 2 0.0108217
HJURP Holliday junction recognition protein 0.0107294

decreased expression

Symbol Name Standardized Value
VIM vimentin -0.290649
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.229417
UBC ubiquitin C -0.105989
PTMA prothymosin, alpha -0.0864858
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0839196
ENO1 enolase 1, (alpha) -0.0798971
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0714463
TMSB10 thymosin beta 10 -0.063614
PKM pyruvate kinase, muscle -0.06325
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.0629358
RPS27A ribosomal protein S27a -0.0567966
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0527381
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0493044
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.049048
CCND1 cyclin D1 -0.0478937
ANKRD1 ankyrin repeat domain 1 (cardiac muscle) -0.0477089
SQSTM1 sequestosome 1 -0.0474485
FTL ferritin, light polypeptide -0.0468294
TM4SF1 transmembrane 4 L six family member 1 -0.0430344
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 -0.0427893
POTEF POTE ankyrin domain family, member F -0.0419057
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.0411407
NAP1L1 nucleosome assembly protein 1-like 1 -0.0392481
PCBP2 poly(rC) binding protein 2 -0.0388141
RPS8 ribosomal protein S8 -0.0383226
RPS6 ribosomal protein S6 -0.0383193
NLGN1 neuroligin 1 -0.0382666
MT2A metallothionein 2A -0.037795
B2M beta-2-microglobulin -0.037774
IFI6 interferon, alpha-inducible protein 6 -0.037646
RPL23 ribosomal protein L23 -0.0376303
RPL36A ribosomal protein L36a -0.0365592
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0360059
RPLP2 ribosomal protein, large, P2 -0.035712
TPT1 tumor protein, translationally-controlled 1 -0.0349469
RPS23 ribosomal protein S23 -0.034829
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0340067
ANKRD28 ankyrin repeat domain 28 -0.0336797
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0334624
VMP1 vacuole membrane protein 1 -0.0333209
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa -0.0331165
PGK1 phosphoglycerate kinase 1 -0.0328747
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0328672
CD44 CD44 molecule (Indian blood group) -0.0325502
TXNRD1 thioredoxin reductase 1 -0.0324966
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0319994
RPS24 ribosomal protein S24 -0.0316958
HLA-B major histocompatibility complex, class I, B -0.0314614
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0313257
SEPTIN7 septin 7 -0.0308866
EXT1 exostosin glycosyltransferase 1 -0.0304073
RAB7A RAB7A, member RAS oncogene family -0.0303848
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa -0.0300318
EMP1 epithelial membrane protein 1 -0.0299506
RPLP1 ribosomal protein, large, P1 -0.0292879
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 -0.0292528
ST13 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) -0.0284671
MAP4 microtubule-associated protein 4 -0.0284597
FUS FUS RNA binding protein -0.0272998
EIF1 eukaryotic translation initiation factor 1 -0.0272468
APOD apolipoprotein D -0.0266921
MAP1LC3B microtubule-associated protein 1 light chain 3 beta -0.0262529
RPL31 ribosomal protein L31 -0.0262133
SP100 SP100 nuclear antigen -0.0260626
RPS15 ribosomal protein S15 -0.0258498
BPTF bromodomain PHD finger transcription factor -0.0255585
RPL15 ribosomal protein L15 -0.0250733
ASPH aspartate beta-hydroxylase -0.0250465
RPS13 ribosomal protein S13 -0.0249436
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa -0.0248466
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 -0.0246745
RPS29 ribosomal protein S29 -0.0246268
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0245193
H3-3B H3.3 histone B -0.0244075
ARID4B AT rich interactive domain 4B (RBP1-like) -0.0241648
RPS5 ribosomal protein S5 -0.0239232
S100A10 S100 calcium binding protein A10 -0.0236599
RPS14 ribosomal protein S14 -0.0235444
ATRX alpha thalassemia/mental retardation syndrome X-linked -0.0234223
RPL5 ribosomal protein L5 -0.0234178
PRRC2C proline-rich coiled-coil 2C -0.0233404
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0231116
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0226931
HMGA1 high mobility group AT-hook 1 -0.0225763
RPL19 ribosomal protein L19 -0.0225642
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0224828
ERC2 ELKS/RAB6-interacting/CAST family member 2 -0.0223201
TPM4 tropomyosin 4 -0.0220772
IFIH1 interferon induced with helicase C domain 1 -0.0220256
MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 -0.0219724
IFI16 interferon, gamma-inducible protein 16 -0.0219455
CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 -0.0218261
HSPA9 heat shock 70kDa protein 9 (mortalin) -0.0215862
RPL32 ribosomal protein L32 -0.0215272
CSNK1A1 casein kinase 1, alpha 1 -0.0214216
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0214012
PNRC1 proline-rich nuclear receptor coactivator 1 -0.0212201
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0211975
S100A9 S100 calcium binding protein A9 -0.0211663
AHNAK AHNAK nucleoprotein -0.0211093