Plicamycin_SW 1271 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Plicamycin perturbation in SW 1271 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Plicamycin_SW 1271 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PTMA prothymosin, alpha 0.0637375
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0579826
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0512165
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0487615
SEC23A Sec23 homolog A (S. cerevisiae) 0.0444503
GOLGA4 golgin A4 0.0421472
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa 0.0396188
CANX calnexin 0.0362764
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0326737
RSRC2 arginine/serine-rich coiled-coil 2 0.0322962
SETD5 SET domain containing 5 0.0318682
WAC WW domain containing adaptor with coiled-coil 0.0316034
NUP58 nucleoporin 58 0.0315217
PCBP2 poly(rC) binding protein 2 0.0313062
SET SET nuclear proto-oncogene 0.0291836
ECT2 epithelial cell transforming 2 0.0291403
NAP1L1 nucleosome assembly protein 1-like 1 0.0287708
CBFA2T2 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 0.0287518
MYH9 myosin, heavy chain 9, non-muscle 0.0285179
PIKFYVE phosphoinositide kinase, FYVE finger containing 0.0280588
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) 0.0272044
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0271575
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0270977
RAD23B RAD23 homolog B (S. cerevisiae) 0.0268111
HELZ helicase with zinc finger 0.0265665
CLTC clathrin, heavy chain (Hc) 0.0261452
ETNK1 ethanolamine kinase 1 0.0260651
HOOK2 hook microtubule-tethering protein 2 0.025525
AKAP10 A kinase (PRKA) anchor protein 10 0.0249844
LCORL ligand dependent nuclear receptor corepressor-like 0.024945
CKAP5 cytoskeleton associated protein 5 0.0241297
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0236016
LRRFIP2 leucine rich repeat (in FLII) interacting protein 2 0.0233072
KIAA1958 KIAA1958 0.0230781
SREK1 splicing regulatory glutamine/lysine-rich protein 1 0.0229935
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.022897
SNX13 sorting nexin 13 0.0227572
PHC3 polyhomeotic homolog 3 (Drosophila) 0.0221716
UBA6 ubiquitin-like modifier activating enzyme 6 0.0220893
TNIP1 TNFAIP3 interacting protein 1 0.0218156
TPR translocated promoter region, nuclear basket protein 0.0216918
TXNRD1 thioredoxin reductase 1 0.021611
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.0215879
TMF1 TATA element modulatory factor 1 0.0215737
YBX1 Y box binding protein 1 0.0215311
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0212592
PCMT1 protein-L-isoaspartate (D-aspartate) O-methyltransferase 0.0209159
RARS1 arginyl-tRNA synthetase 1 0.0207068
RAB6A RAB6A, member RAS oncogene family 0.0202747
FANCI Fanconi anemia, complementation group I 0.0201327
ARHGAP5 Rho GTPase activating protein 5 0.0199342
CASC3 cancer susceptibility candidate 3 0.0198562
EEF2 eukaryotic translation elongation factor 2 0.0198165
UBR4 ubiquitin protein ligase E3 component n-recognin 4 0.0198101
AHCTF1 AT hook containing transcription factor 1 0.0197208
MED17 mediator complex subunit 17 0.0195542
CNOT1 CCR4-NOT transcription complex, subunit 1 0.0194698
XPO1 exportin 1 0.0194652
BAZ1B bromodomain adjacent to zinc finger domain, 1B 0.019432
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 0.019428
COPA coatomer protein complex, subunit alpha 0.019427
WDR43 WD repeat domain 43 0.0193966
MATR3 matrin 3 0.0192183
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0190209
GOLT1B golgi transport 1B 0.0188201
ZCCHC7 zinc finger, CCHC domain containing 7 0.0187184
FXR1 fragile X mental retardation, autosomal homolog 1 0.0182128
CAPRIN1 cell cycle associated protein 1 0.018157
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.0181532
KDM6A lysine (K)-specific demethylase 6A 0.0180667
ATP13A3 ATPase type 13A3 0.0178377
TPM3 tropomyosin 3 0.0178372
ABCF1 ATP-binding cassette, sub-family F (GCN20), member 1 0.0178059
UBA2 ubiquitin-like modifier activating enzyme 2 0.0177836
HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 (2H9) 0.0177804
CEP95 centrosomal protein 95kDa 0.0177123
EIF3E eukaryotic translation initiation factor 3, subunit E 0.0177035
ACBD3 acyl-CoA binding domain containing 3 0.0176949
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 0.0175519
TBC1D15 TBC1 domain family, member 15 0.017533
TTK TTK protein kinase 0.0174359
NUMA1 nuclear mitotic apparatus protein 1 0.0173486
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0173141
CENPF centromere protein F, 350/400kDa 0.0173083
SUCO SUN domain containing ossification factor 0.0172487
RNMT RNA (guanine-7-) methyltransferase 0.0171379
BCLAF1 BCL2-associated transcription factor 1 0.0171193
GAS2L3 growth arrest-specific 2 like 3 0.0170555
NCKAP1 NCK-associated protein 1 0.0170067
SAFB scaffold attachment factor B 0.0170052
TOP2B topoisomerase (DNA) II beta 180kDa 0.016999
ZC3H13 zinc finger CCCH-type containing 13 0.0169364
RPS12 ribosomal protein S12 0.0168679
SPAG9 sperm associated antigen 9 0.0168258
SRP54 signal recognition particle 54kDa 0.016817
ORC4 origin recognition complex, subunit 4 0.016657
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0166004
CXCL8 chemokine (C-X-C motif) ligand 8 0.0165797
ATXN2 ataxin 2 0.0164876
CALR calreticulin 0.0164344

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.411397
FNDC3B fibronectin type III domain containing 3B -0.133955
TMSB10 thymosin beta 10 -0.110522
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.10103
TPT1 tumor protein, translationally-controlled 1 -0.0773955
VIM vimentin -0.0752068
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0696286
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0693483
DST dystonin -0.0680867
ZBTB20 zinc finger and BTB domain containing 20 -0.0680738
PKM pyruvate kinase, muscle -0.0646759
CD44 CD44 molecule (Indian blood group) -0.0605916
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0594652
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0593654
PRKCA protein kinase C, alpha -0.0573042
EGR1 early growth response 1 -0.0565476
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.054132
SLC38A2 solute carrier family 38, member 2 -0.0525459
FMNL2 formin-like 2 -0.0522944
SH3KBP1 SH3-domain kinase binding protein 1 -0.0517941
ANGPTL4 angiopoietin-like 4 -0.051382
HMGA2 high mobility group AT-hook 2 -0.0512633
LDHA lactate dehydrogenase A -0.0497606
IGF2 insulin-like growth factor 2 -0.0485082
RPLP1 ribosomal protein, large, P1 -0.0478446
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0475655
ATXN1 ataxin 1 -0.0463637
PALM2AKAP2 PALM2 and AKAP2 fusion -0.0461836
FTH1 ferritin, heavy polypeptide 1 -0.0452314
RIGI RNA sensor RIG-I -0.0450867
IGFBP3 insulin-like growth factor binding protein 3 -0.0448768
RPL35A ribosomal protein L35a -0.0429796
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0428665
DPYD dihydropyrimidine dehydrogenase -0.0408789
NT5E 5'-nucleotidase, ecto (CD73) -0.0401172
IL1RAP interleukin 1 receptor accessory protein -0.0391843
N4BP2L2 NEDD4 binding protein 2-like 2 -0.0389585
RORA RAR-related orphan receptor A -0.0372881
SVIL supervillin -0.0370509
ENO2 enolase 2 (gamma, neuronal) -0.036873
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) -0.0362575
VMP1 vacuole membrane protein 1 -0.0355009
PRSS23 protease, serine, 23 -0.0352068
ANXA2 annexin A2 -0.0351367
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0350319
RAI14 retinoic acid induced 14 -0.034528
OSMR oncostatin M receptor -0.0344925
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 -0.0343569
ATG7 autophagy related 7 -0.0341851
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.033602
BASP1 brain abundant, membrane attached signal protein 1 -0.0335426
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0333363
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0332645
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0331127
ANKRD11 ankyrin repeat domain 11 -0.0329397
NEDD4 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase -0.0327414
NCEH1 neutral cholesterol ester hydrolase 1 -0.0326518
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) -0.0325721
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats -0.032429
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 -0.0323543
FMN1 formin 1 -0.0323028
FLNB filamin B, beta -0.0320341
PRR16 proline rich 16 -0.0316198
ERBIN erbb2 interacting protein -0.0313269
TIMP1 TIMP metallopeptidase inhibitor 1 -0.0311164
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0310535
NFE2L2 nuclear factor, erythroid 2-like 2 -0.0310419
NALCN sodium leak channel, non selective -0.0310158
ERC2 ELKS/RAB6-interacting/CAST family member 2 -0.0309244
EXT1 exostosin glycosyltransferase 1 -0.0307841
BPTF bromodomain PHD finger transcription factor -0.030575
DNER delta/notch-like EGF repeat containing -0.0301597
PNRC1 proline-rich nuclear receptor coactivator 1 -0.0301348
ARHGEF28 Rho guanine nucleotide exchange factor (GEF) 28 -0.0300698
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 -0.0299743
MACF1 microtubule-actin crosslinking factor 1 -0.0295251
MARK3 MAP/microtubule affinity-regulating kinase 3 -0.0294211
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 -0.0292943
DYNLRB1 dynein, light chain, roadblock-type 1 -0.0292399
ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 -0.0288082
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C -0.0286863
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 -0.0286687
PCED1B PC-esterase domain containing 1B -0.028328
RPLP2 ribosomal protein, large, P2 -0.0282616
MT2A metallothionein 2A -0.0280844
RAD51B RAD51 paralog B -0.0280076
BICD1 bicaudal D homolog 1 (Drosophila) -0.0279954
INTS6 integrator complex subunit 6 -0.0278438
SDCCAG8 serologically defined colon cancer antigen 8 -0.0276551
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 -0.0265655
ZNF609 zinc finger protein 609 -0.0263383
AHNAK AHNAK nucleoprotein -0.0262692
PRH1 proline-rich protein HaeIII subfamily 1 -0.0262291
NBEA neurobeachin -0.0261288
IL6ST interleukin 6 signal transducer -0.0259653
FAM3C family with sequence similarity 3, member C -0.0259597
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0256846
TRIO trio Rho guanine nucleotide exchange factor -0.0251592
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 -0.0249814
SPDL1 spindle apparatus coiled-coil protein 1 -0.0249613