Pralsetinib_NCI-H661 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Pralsetinib perturbation in NCI-H661 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Pralsetinib_NCI-H661 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
COL11A1 collagen, type XI, alpha 1 0.174985
ANKRD33B ankyrin repeat domain 33B 0.101796
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0998887
LOC102724023 ES1 protein homolog, mitochondrial 0.080174
PARD3B par-3 family cell polarity regulator beta 0.0735658
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0724423
ENO1 enolase 1, (alpha) 0.066488
FOXP2 forkhead box P2 0.0662114
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.0619847
KMT2E lysine (K)-specific methyltransferase 2E 0.0614703
EEF2 eukaryotic translation elongation factor 2 0.0566774
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.053485
COL5A2 collagen, type V, alpha 2 0.0513817
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0513484
RASAL2 RAS protein activator like 2 0.0508836
B2M beta-2-microglobulin 0.0505634
PEG10 paternally expressed 10 0.0503452
TTC3 tetratricopeptide repeat domain 3 0.0456806
CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) 0.0455821
CCDC88A coiled-coil domain containing 88A 0.0455588
RERE arginine-glutamic acid dipeptide (RE) repeats 0.0449245
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0448876
CSRNP3 cysteine-serine-rich nuclear protein 3 0.0429959
RPLP0 ribosomal protein, large, P0 0.0425179
SERTAD2 SERTA domain containing 2 0.0406409
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.040614
GPBP1 GC-rich promoter binding protein 1 0.0405334
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0402959
PTMA prothymosin, alpha 0.0398911
PCBP2 poly(rC) binding protein 2 0.0398546
SYT1 synaptotagmin I 0.0386715
PDE4D phosphodiesterase 4D, cAMP-specific 0.0386407
DENND4C DENN/MADD domain containing 4C 0.0386402
USP9X ubiquitin specific peptidase 9, X-linked 0.0382249
GPHN gephyrin 0.0381083
LMO7 LIM domain 7 0.0379154
RAD51B RAD51 paralog B 0.0378787
EXT1 exostosin glycosyltransferase 1 0.0375395
ASPH aspartate beta-hydroxylase 0.0372898
DDIT4 DNA-damage-inducible transcript 4 0.0368735
FBXO11 F-box protein 11 0.0366623
PUM2 pumilio RNA-binding family member 2 0.0363607
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0362655
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.0358819
STAT1 signal transducer and activator of transcription 1, 91kDa 0.035861
XPO1 exportin 1 0.035748
DSCAM Down syndrome cell adhesion molecule 0.0354051
GLS2 glutaminase 2 (liver, mitochondrial) 0.0350144
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0350141
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.0349268
DIAPH3 diaphanous-related formin 3 0.034123
APP amyloid beta (A4) precursor protein 0.0339396
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0339091
SAMD4A sterile alpha motif domain containing 4A 0.0338497
INTS6 integrator complex subunit 6 0.0336038
COL3A1 collagen, type III, alpha 1 0.0324078
WNK1 WNK lysine deficient protein kinase 1 0.0319408
PCDH18 protocadherin 18 0.0319139
ARHGAP26 Rho GTPase activating protein 26 0.0316969
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 0.0310274
MNAT1 MNAT CDK-activating kinase assembly factor 1 0.030959
FOXO1 forkhead box O1 0.0305606
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0302524
CALR calreticulin 0.0301414
RPS6KC1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 0.0300958
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0300883
GOLGA4 golgin A4 0.0300805
AKAP12 A kinase (PRKA) anchor protein 12 0.0299701
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0297601
RAB30 RAB30, member RAS oncogene family 0.0297531
UBC ubiquitin C 0.0297287
PDE3A phosphodiesterase 3A, cGMP-inhibited 0.0295145
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 0.0293414
NDRG1 N-myc downstream regulated 1 0.0293017
ACIN1 apoptotic chromatin condensation inducer 1 0.0286704
PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 0.0285763
FNDC3A fibronectin type III domain containing 3A 0.0285549
EIF3A eukaryotic translation initiation factor 3, subunit A 0.028495
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 0.0284858
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 0.0284774
PHF3 PHD finger protein 3 0.0284604
FNBP1L formin binding protein 1-like 0.0280414
ELOF1 elongation factor 1 homolog (S. cerevisiae) 0.0275982
ELF2 E74-like factor 2 (ets domain transcription factor) 0.027453
ZEB2 zinc finger E-box binding homeobox 2 0.0273452
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.027065
PCM1 pericentriolar material 1 0.0269359
LOC112694756 uncharaterized LOC112694756 0.0269024
HNRNPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) 0.0268061
HDAC9 histone deacetylase 9 0.0267398
CTNNBL1 catenin, beta like 1 0.0266184
HMGB2 high mobility group box 2 0.0265407
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0261759
ZNF638 zinc finger protein 638 0.0261685
CDH19 cadherin 19, type 2 0.0261148
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0260821
CELF1 CUGBP, Elav-like family member 1 0.02594
EIF2S2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa 0.0258984
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.025834
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0257756

decreased expression

Symbol Name Standardized Value
CADM2 cell adhesion molecule 2 -0.111646
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.106956
CTNNA2 catenin (cadherin-associated protein), alpha 2 -0.0996045
MDK midkine (neurite growth-promoting factor 2) -0.0823727
TRIO trio Rho guanine nucleotide exchange factor -0.0813027
FNDC3B fibronectin type III domain containing 3B -0.0762911
COL1A2 collagen, type I, alpha 2 -0.0760677
CTNNA3 catenin (cadherin-associated protein), alpha 3 -0.0755087
ERBB4 erb-b2 receptor tyrosine kinase 4 -0.0697378
EMP1 epithelial membrane protein 1 -0.0628175
SIPA1L3 signal-induced proliferation-associated 1 like 3 -0.0608359
HS3ST5 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 -0.0554317
SRP54 signal recognition particle 54kDa -0.0541282
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0528223
CDH4 cadherin 4, type 1, R-cadherin (retinal) -0.0526468
NEBL nebulette -0.0519589
CDH10 cadherin 10, type 2 (T2-cadherin) -0.0513184
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.050316
VIM vimentin -0.0501586
THOC2 THO complex 2 -0.0499767
UPP1 uridine phosphorylase 1 -0.0498134
SNX6 sorting nexin 6 -0.0484751
CAMTA1 calmodulin binding transcription activator 1 -0.0482629
ADGRL3 adhesion G protein-coupled receptor L3 -0.0480337
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) -0.0473893
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0465451
TMSB10 thymosin beta 10 -0.0463868
STRN3 striatin, calmodulin binding protein 3 -0.0459347
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0455177
MEIS2 Meis homeobox 2 -0.0443808
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.0443765
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0427945
ATP5F1B ATP synthase F1 subunit beta -0.0423434
IGF1R insulin-like growth factor 1 receptor -0.0420561
PFN1 profilin 1 -0.0419063
GALNTL6 polypeptide N-acetylgalactosaminyltransferase-like 6 -0.0418893
GPC3 glypican 3 -0.0411836
NRG1 neuregulin 1 -0.0403182
DMD dystrophin -0.0402565
SLC38A2 solute carrier family 38, member 2 -0.0402085
MAP4 microtubule-associated protein 4 -0.0396561
SMYD3 SET and MYND domain containing 3 -0.0385492
PLEKHB2 pleckstrin homology domain containing, family B (evectins) member 2 -0.0385387
BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2 -0.0381534
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 -0.0372305
ACTG1 actin gamma 1 -0.0369042
CENPF centromere protein F, 350/400kDa -0.0368668
RAI1 retinoic acid induced 1 -0.0359543
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats -0.0353418
MRPS6 mitochondrial ribosomal protein S6 -0.0348766
UBE2K ubiquitin-conjugating enzyme E2K -0.034068
RPL8 ribosomal protein L8 -0.0336574
MARCHF6 membrane associated ring-CH-type finger 6 -0.0334943
POTEF POTE ankyrin domain family, member F -0.033082
ZNF385D zinc finger protein 385D -0.0328742
SETD5 SET domain containing 5 -0.0327617
RPS2 ribosomal protein S2 -0.032332
HSPB1 heat shock 27kDa protein 1 -0.0319795
CEP192 centrosomal protein 192kDa -0.0318956
PHF21A PHD finger protein 21A -0.0317421
RTN4 reticulon 4 -0.0314287
NPAS3 neuronal PAS domain protein 3 -0.0312455
ZMYM2 zinc finger, MYM-type 2 -0.0307377
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0304492
LYST lysosomal trafficking regulator -0.0304327
RAB6A RAB6A, member RAS oncogene family -0.0302486
FBXO17 F-box protein 17 -0.03014
PPM1B protein phosphatase, Mg2+/Mn2+ dependent, 1B -0.0298755
VPS13B vacuolar protein sorting 13 homolog B (yeast) -0.0297176
KLHL5 kelch-like family member 5 -0.0296467
RPS6 ribosomal protein S6 -0.0295985
ZFAND3 zinc finger, AN1-type domain 3 -0.0291223
RPS21 ribosomal protein S21 -0.0290114
MAP1LC3B microtubule-associated protein 1 light chain 3 beta -0.0287902
FTL ferritin, light polypeptide -0.0286205
PAN3 PAN3 poly(A) specific ribonuclease subunit -0.0276777
LUC7L3 LUC7-like 3 (S. cerevisiae) -0.027672
ANXA1 annexin A1 -0.0274408
ZDHHC20 zinc finger, DHHC-type containing 20 -0.0273859
MAP3K2 mitogen-activated protein kinase kinase kinase 2 -0.0272594
ADGRV1 adhesion G protein-coupled receptor V1 -0.0269592
ZMYM4 zinc finger, MYM-type 4 -0.0266
DENND5B DENN/MADD domain containing 5B -0.02614
NKTR natural killer cell triggering receptor -0.0260887
RFPL4B ret finger protein-like 4B -0.0257669
KPNB1 karyopherin (importin) beta 1 -0.0257351
IRF2BP2 interferon regulatory factor 2 binding protein 2 -0.025613
TPX2 TPX2, microtubule-associated -0.0255233
ASXL1 additional sex combs like transcriptional regulator 1 -0.025262
RPS8 ribosomal protein S8 -0.0250675
SBF2 SET binding factor 2 -0.0248989
RPS13 ribosomal protein S13 -0.0248329
RAB31 RAB31, member RAS oncogene family -0.024832
RPS16 ribosomal protein S16 -0.0247879
VAPA VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa -0.0247599
RPL34 ribosomal protein L34 -0.024754
RPL6 ribosomal protein L6 -0.0247447
CERT1 ceramide transporter 1 -0.0246912
RPLP2 ribosomal protein, large, P2 -0.024606
SERF2 small EDRK-rich factor 2 -0.0245546