Preribosome Gene Set

Dataset CM4AI U2OS Cell Map Protein Localization Assemblies
Category structural or functional annotations
Type biological term
Description Any complex of pre-rRNAs, ribosomal proteins, and associated proteins formed during ribosome biogenesis. (Gene Ontology, GO_0030684)
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Genes

178 proteins comprising Preribosome assembly using integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset.

Symbol Name
AATF apoptosis antagonizing transcription factor
ADAR adenosine deaminase, RNA-specific
AGTPBP1 ATP/GTP binding protein 1
AK8 adenylate kinase 8
ASXL1 additional sex combs like transcriptional regulator 1
BMS1 BMS1 ribosome biogenesis factor
BOP1 block of proliferation 1
C12ORF43 chromosome 12 open reading frame 43
C1D C1D nuclear receptor corepressor
C8ORF33 chromosome 8 open reading frame 33
CABLES2 Cdk5 and Abl enzyme substrate 2
CBX6 chromobox homolog 6
CCDC137 coiled-coil domain containing 137
CCDC59 coiled-coil domain containing 59
CDCA8 cell division cycle associated 8
CENATAC centrosomal AT-AC splicing factor
CENPH centromere protein H
CENPP centromere protein P
DDA1 DET1 and DDB1 associated 1
DDX10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
DDX27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
DDX49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
DDX51 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
DDX52 DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
DDX55 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
DDX56 DEAD (Asp-Glu-Ala-Asp) box helicase 56
DHX33 DEAH (Asp-Glu-Ala-His) box polypeptide 33
DHX57 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
DNAJC21 DnaJ (Hsp40) homolog, subfamily C, member 21
DNMBP dynamin binding protein
DNTTIP1 deoxynucleotidyltransferase, terminal, interacting protein 1
DNTTIP2 deoxynucleotidyltransferase, terminal, interacting protein 2
DUSP11 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
ESF1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)
EXOSC5 exosome component 5
FAM32A family with sequence similarity 32, member A
GLE1 GLE1 RNA export mediator
GNL2 guanine nucleotide binding protein-like 2 (nucleolar)
GPALPP1 GPALPP motifs containing 1
GTPBP4 GTP binding protein 4
GZF1 GDNF-inducible zinc finger protein 1
H1-2 H1.2 linker histone, cluster member
HELZ helicase with zinc finger
HMGA1 high mobility group AT-hook 1
HMGB2 high mobility group box 2
HOMEZ homeobox and leucine zipper encoding
IFI16 interferon, gamma-inducible protein 16
ILF3 interleukin enhancer binding factor 3, 90kDa
IMP4 IMP4, U3 small nucleolar ribonucleoprotein
IQGAP3 IQ motif containing GTPase activating protein 3
JADE3 jade family PHD finger 3
JRK Jrk homolog (mouse)
KDM6A lysine (K)-specific demethylase 6A
KNOP1 lysine-rich nucleolar protein 1
KRI1 KRI1 homolog (S. cerevisiae)
KRR1 KRR1, small subunit (SSU) processome component, homolog (yeast)
LARP4B La ribonucleoprotein domain family, member 4B
LIN28B lin-28 homolog B (C. elegans)
LSM3 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
LYAR Ly1 antibody reactive
MCEE methylmalonyl CoA epimerase
MCM10 minichromosome maintenance complex component 10
MECP2 methyl CpG binding protein 2
MKRN2 makorin ring finger protein 2
MPHOSPH10 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)
MPHOSPH6 M-phase phosphoprotein 6
NAT10 N-acetyltransferase 10 (GCN5-related)
NGDN neuroguidin, EIF4E binding protein
NIFK nucleolar protein interacting with the FHA domain of MKI67
NIN ninein (GSK3B interacting protein)
NKRF NFKB repressing factor
NLE1 notchless homolog 1 (Drosophila)
NLRP2B NLR family pyrin domain containing 2B
NOC4L nucleolar complex associated 4 homolog (S. cerevisiae)
NOL10 nucleolar protein 10
NOL11 nucleolar protein 11
NOL12 nucleolar protein 12
NOL6 nucleolar protein 6 (RNA-associated)
NOL7 nucleolar protein 7, 27kDa
NOL8 nucleolar protein 8
NOLC1 nucleolar and coiled-body phosphoprotein 1
NOM1 nucleolar protein with MIF4G domain 1
NOP14 NOP14 nucleolar protein
NOP16 NOP16 nucleolar protein
NOP53 NOP53 ribosome biogenesis factor
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NPM3 nucleophosmin/nucleoplasmin 3
NSUN5 NOP2/Sun domain family, member 5
NUSAP1 nucleolar and spindle associated protein 1
NXF1 nuclear RNA export factor 1
PARP12 poly (ADP-ribose) polymerase family, member 12
PARP2 poly (ADP-ribose) polymerase 2
PDGFRL platelet-derived growth factor receptor-like
PES1 pescadillo ribosomal biogenesis factor 1
PHF2 PHD finger protein 2
PHF6 PHD finger protein 6
POP5 processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)
PURG purine-rich element binding protein G
PYDC1 PYD (pyrin domain) containing 1
PYM1 PYM homolog 1, exon junction complex associated factor
RBBP5 retinoblastoma binding protein 5
RBM19 RNA binding motif protein 19
RBM28 RNA binding motif protein 28
RBM34 RNA binding motif protein 34
RBM45 RNA binding motif protein 45
RBMX2 RNA binding motif protein, X-linked 2
RECQL4 RecQ protein-like 4
REXO4 REX4, RNA exonuclease 4 homolog (S. cerevisiae)
RIOX1 ribosomal oxygenase 1
RIOX2 ribosomal oxygenase 2
RMP24 ribonuclease MRP subunit p24
RMP64 ribonuclease MRP subunit p64
RPF1 ribosome production factor 1 homolog (S. cerevisiae)
RPL18A ribosomal protein L18a
RPL19 ribosomal protein L19
RPL3 ribosomal protein L3
RPP30 ribonuclease P/MRP 30kDa subunit
RPP38 ribonuclease P/MRP 38kDa subunit
RPS19BP1 ribosomal protein S19 binding protein 1
RPS3A ribosomal protein S3A
RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3
RRP1B ribosomal RNA processing 1B
RRP36 ribosomal RNA processing 36 homolog (S. cerevisiae)
RRP7A ribosomal RNA processing 7 homolog A (S. cerevisiae)
RRP8 ribosomal RNA processing 8, methyltransferase, homolog (yeast)
RRS1 RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)
RSL1D1 ribosomal L1 domain containing 1
SDAD1 SDA1 domain containing 1
SENP3 SUMO1/sentrin/SMT3 specific peptidase 3
SETD7 SET domain containing (lysine methyltransferase) 7
SF3B3 splicing factor 3b, subunit 3, 130kDa
SLBP stem-loop binding protein
SMG6 SMG6 nonsense mediated mRNA decay factor
SPTY2D1 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
SRFBP1 serum response factor binding protein 1
SRP14 signal recognition particle 14kDa (homologous Alu RNA binding protein)
SRSF5 serine/arginine-rich splicing factor 5
SURF2 surfeit 2
SURF6 surfeit 6
TAF1A TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa
TAF1B TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa
TAF1C TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa
TARBP2 TAR (HIV-1) RNA binding protein 2
TBL3 transducin (beta)-like 3
TMA16 translation machinery associated 16 homolog (S. cerevisiae)
TNNI1 troponin I type 1 (skeletal, slow)
TOP2A topoisomerase (DNA) II alpha 170kDa
TP53TG5 TP53 target 5
UBE2I ubiquitin-conjugating enzyme E2I
UBR7 ubiquitin protein ligase E3 component n-recognin 7 (putative)
URB2 URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
USP36 ubiquitin specific peptidase 36
USP37 ubiquitin specific peptidase 37
UTP11 UTP11 small subunit processome component
UTP15 UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)
UTP18 UTP18 small subunit (SSU) processome component homolog (yeast)
UTP23 UTP23, small subunit (SSU) processome component, homolog (yeast)
UTP3 UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)
VSX1 visual system homeobox 1
WDR3 WD repeat domain 3
WDR36 WD repeat domain 36
XPC xeroderma pigmentosum, complementation group C
ZCCHC10 zinc finger, CCHC domain containing 10
ZCCHC7 zinc finger, CCHC domain containing 7
ZCCHC9 zinc finger, CCHC domain containing 9
ZFP91 ZFP91 zinc finger protein
ZKSCAN8 zinc finger with KRAB and SCAN domains 8
ZMYND8 zinc finger, MYND-type containing 8
ZNF16 zinc finger protein 16
ZNF358 zinc finger protein 358
ZNF593 zinc finger protein 593
ZNF668 zinc finger protein 668
ZNF689 zinc finger protein 689
ZNF771 zinc finger protein 771
ZNF787 zinc finger protein 787
ZNF865 zinc finger protein 865
ZSCAN25 zinc finger and SCAN domain containing 25