Pyridoxine (hydrochloride)_CFPAC-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Pyridoxine (hydrochloride) perturbation in CFPAC-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Pyridoxine (hydrochloride)_CFPAC-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
EFNA5 ephrin-A5 0.0821905
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0720497
APOL1 apolipoprotein L, 1 0.0706508
NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) 0.0651905
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0636353
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0533052
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0477914
BICC1 BicC family RNA binding protein 1 0.0474323
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0468263
SP100 SP100 nuclear antigen 0.0448233
WWTR1 WW domain containing transcription regulator 1 0.0432139
TGM2 transglutaminase 2 0.0417388
KYNU kynureninase 0.0395137
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0390765
RIGI RNA sensor RIG-I 0.0363751
MX1 MX dynamin-like GTPase 1 0.0358957
NRIP1 nuclear receptor interacting protein 1 0.0355047
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.0354275
PDZD8 PDZ domain containing 8 0.0353938
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0353569
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 0.0333803
LAMA4 laminin, alpha 4 0.0324514
ALCAM activated leukocyte cell adhesion molecule 0.0321307
MYO1E myosin IE 0.0306119
ZSWIM6 zinc finger, SWIM-type containing 6 0.0303689
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 0.0302497
EHBP1 EH domain binding protein 1 0.0301768
CP ceruloplasmin (ferroxidase) 0.0299638
RERE arginine-glutamic acid dipeptide (RE) repeats 0.0297683
ARHGAP42 Rho GTPase activating protein 42 0.0283315
DOCK5 dedicator of cytokinesis 5 0.0279968
C3 complement component 3 0.0279078
GAREM1 GRB2 associated regulator of MAPK1 subtype 1 0.0278747
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 0.0274668
HDAC9 histone deacetylase 9 0.0268973
NTN4 netrin 4 0.0258282
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0250187
ZC3H12C zinc finger CCCH-type containing 12C 0.0249119
DSPP dentin sialophosphoprotein 0.0248404
RAB10 RAB10, member RAS oncogene family 0.0248272
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0242943
FHL2 four and a half LIM domains 2 0.023734
SGMS2 sphingomyelin synthase 2 0.022953
IFIT1 interferon-induced protein with tetratricopeptide repeats 1 0.0229355
IFI44L interferon-induced protein 44-like 0.0224264
RFFL ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 0.0224183
EPAS1 endothelial PAS domain protein 1 0.0224045
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0221989
LOC102724023 ES1 protein homolog, mitochondrial 0.0220378
EXT1 exostosin glycosyltransferase 1 0.0219186
BAZ1A bromodomain adjacent to zinc finger domain, 1A 0.0218503
PLK2 polo-like kinase 2 0.0216048
RNF213 ring finger protein 213 0.0212041
TNFRSF21 tumor necrosis factor receptor superfamily, member 21 0.0208133
B4GALT5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 0.0205466
IGFBP3 insulin-like growth factor binding protein 3 0.0204982
FLNA filamin A, alpha 0.0204837
UBASH3B ubiquitin associated and SH3 domain containing B 0.0200181
CAPRIN2 caprin family member 2 0.0199633
MAP4K3 mitogen-activated protein kinase kinase kinase kinase 3 0.0199555
RIN2 Ras and Rab interactor 2 0.0196695
SRRM2 serine/arginine repetitive matrix 2 0.0195955
TRIP12 thyroid hormone receptor interactor 12 0.0195953
MBD5 methyl-CpG binding domain protein 5 0.0195621
IL6ST interleukin 6 signal transducer 0.0195355
GALNT2 polypeptide N-acetylgalactosaminyltransferase 2 0.0194696
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0194368
ZEB1 zinc finger E-box binding homeobox 1 0.0189179
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0188132
SVIL supervillin 0.0184224
OSMR oncostatin M receptor 0.0181232
MUC16 mucin 16, cell surface associated 0.0177599
CAMK2D calcium/calmodulin-dependent protein kinase II delta 0.0177157
FAM3C family with sequence similarity 3, member C 0.0175811
EGR1 early growth response 1 0.0175085
AHCYL2 adenosylhomocysteinase-like 2 0.0174442
HS2ST1 heparan sulfate 2-O-sulfotransferase 1 0.0173393
ITGA6 integrin, alpha 6 0.0172733
CFB complement factor B 0.0171412
SAMD9 sterile alpha motif domain containing 9 0.0171073
CPM carboxypeptidase M 0.0170337
BCL2L1 BCL2-like 1 0.016714
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.0166886
EEF2 eukaryotic translation elongation factor 2 0.0166071
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0165362
PMP22 peripheral myelin protein 22 0.0165214
SHROOM3 shroom family member 3 0.0164602
TMC5 transmembrane channel-like 5 0.0164437
NCEH1 neutral cholesterol ester hydrolase 1 0.0162825
AHNAK2 AHNAK nucleoprotein 2 0.0162652
AREG amphiregulin 0.0162482
PARP14 poly (ADP-ribose) polymerase family, member 14 0.0161816
MEIS1 Meis homeobox 1 0.0160556
MCL1 myeloid cell leukemia 1 0.0160222
LIPH lipase, member H 0.0159876
ADAM19 ADAM metallopeptidase domain 19 0.0159212
BPTF bromodomain PHD finger transcription factor 0.0156124
VMP1 vacuole membrane protein 1 0.0154784
GPHN gephyrin 0.0154448
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.0153263

decreased expression

Symbol Name Standardized Value
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.19059
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.148427
DTNA dystrobrevin, alpha -0.147346
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.112954
NDRG1 N-myc downstream regulated 1 -0.109271
NAMPT nicotinamide phosphoribosyltransferase -0.103706
FUT8 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) -0.090171
MMP7 matrix metallopeptidase 7 -0.0875635
FNDC3B fibronectin type III domain containing 3B -0.0853707
FLNB filamin B, beta -0.0839128
TMSB10 thymosin beta 10 -0.0822041
ANXA2 annexin A2 -0.0748392
POTEF POTE ankyrin domain family, member F -0.0728166
LAMC2 laminin, gamma 2 -0.0721894
PTMA prothymosin, alpha -0.0719642
BCAT1 branched chain amino-acid transaminase 1, cytosolic -0.0669401
PGK1 phosphoglycerate kinase 1 -0.0660016
LAMB3 laminin, beta 3 -0.0650953
KANSL1 KAT8 regulatory NSL complex subunit 1 -0.0648874
CCNY cyclin Y -0.0646781
P4HB prolyl 4-hydroxylase, beta polypeptide -0.064487
FAM13A family with sequence similarity 13, member A -0.0630165
PICALM phosphatidylinositol binding clathrin assembly protein -0.0624986
TSC22D2 TSC22 domain family, member 2 -0.0622201
PKM pyruvate kinase, muscle -0.0610233
HMGA1 high mobility group AT-hook 1 -0.0609249
ACTG1 actin gamma 1 -0.0561988
TRIO trio Rho guanine nucleotide exchange factor -0.056105
FHIP1A FHF complex subunit HOOK interacting protein 1A -0.0556688
F3 coagulation factor III (thromboplastin, tissue factor) -0.055164
GRB10 growth factor receptor-bound protein 10 -0.0550011
ACTN4 actinin, alpha 4 -0.0546897
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0541461
KDM5B lysine (K)-specific demethylase 5B -0.0522237
MEF2A myocyte enhancer factor 2A -0.0513569
RAB1A RAB1A, member RAS oncogene family -0.0512584
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0505636
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0499926
UBA6 ubiquitin-like modifier activating enzyme 6 -0.0497672
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.0493664
SPAG9 sperm associated antigen 9 -0.0491911
ANKRD11 ankyrin repeat domain 11 -0.0476689
HSPG2 heparan sulfate proteoglycan 2 -0.0475045
ELL2 elongation factor, RNA polymerase II, 2 -0.0465143
MYOF myoferlin -0.0463353
TMSB4X thymosin beta 4, X-linked -0.0448873
WSB1 WD repeat and SOCS box containing 1 -0.0443789
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A -0.0440551
MRPS6 mitochondrial ribosomal protein S6 -0.0437672
RAB6A RAB6A, member RAS oncogene family -0.0420265
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0420116
KMT2C lysine (K)-specific methyltransferase 2C -0.0419711
SRP54 signal recognition particle 54kDa -0.0413651
RAB7A RAB7A, member RAS oncogene family -0.0413468
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B -0.0411362
LDHA lactate dehydrogenase A -0.0410534
SEC24A SEC24 family member A -0.0407214
PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 -0.0400088
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 -0.0398042
HELZ helicase with zinc finger -0.0393729
PFKP phosphofructokinase, platelet -0.0393498
MBOAT2 membrane bound O-acyltransferase domain containing 2 -0.0388902
LASP1 LIM and SH3 protein 1 -0.0385732
SEC31A SEC31 homolog A (S. cerevisiae) -0.0384288
TTC3 tetratricopeptide repeat domain 3 -0.0383482
SAMD4A sterile alpha motif domain containing 4A -0.0379065
CANX calnexin -0.0376173
NPEPPS aminopeptidase puromycin sensitive -0.0375411
CMIP c-Maf inducing protein -0.0373378
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0372188
UBE2H ubiquitin-conjugating enzyme E2H -0.0369288
GNAS GNAS complex locus -0.0361895
PDIA3 protein disulfide isomerase family A, member 3 -0.0359043
CNOT2 CCR4-NOT transcription complex, subunit 2 -0.0352555
ITGB4 integrin, beta 4 -0.0352029
RTN4 reticulon 4 -0.0347039
ABI1 abl-interactor 1 -0.0344084
EIF1 eukaryotic translation initiation factor 1 -0.0341665
RRBP1 ribosome binding protein 1 -0.0340639
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0340176
AKAP13 A kinase (PRKA) anchor protein 13 -0.033966
JUP junction plakoglobin -0.0335442
PDIA6 protein disulfide isomerase family A, member 6 -0.0335335
ADAM9 ADAM metallopeptidase domain 9 -0.0333557
TFG TRK-fused gene -0.0332079
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0331449
RPL23 ribosomal protein L23 -0.0327234
RUNX1 runt-related transcription factor 1 -0.032488
MAP1B microtubule-associated protein 1B -0.0320267
MORF4L2 mortality factor 4 like 2 -0.0315771
IRAK3 interleukin-1 receptor-associated kinase 3 -0.0315743
BLZF1 basic leucine zipper nuclear factor 1 -0.0314604
LOC112694756 uncharaterized LOC112694756 -0.0314389
ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 -0.0312783
THSD4 thrombospondin, type I, domain containing 4 -0.031015
MAML2 mastermind-like 2 (Drosophila) -0.030965
PLS3 plastin 3 -0.0307435
ESYT2 extended synaptotagmin-like protein 2 -0.0307308
RAP1B RAP1B, member of RAS oncogene family -0.0304286
HLA-B major histocompatibility complex, class I, B -0.0302706