Pyridoxine (hydrochloride)_PANC-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Pyridoxine (hydrochloride) perturbation in PANC-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Pyridoxine (hydrochloride)_PANC-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
VCL vinculin 0.320542
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.155886
AKAP12 A kinase (PRKA) anchor protein 12 0.137438
ASPH aspartate beta-hydroxylase 0.101017
MYH9 myosin, heavy chain 9, non-muscle 0.0996582
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0796117
CD44 CD44 molecule (Indian blood group) 0.0766943
WWTR1 WW domain containing transcription regulator 1 0.0766437
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae) 0.0761313
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0753285
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0723141
MACF1 microtubule-actin crosslinking factor 1 0.0714768
VMP1 vacuole membrane protein 1 0.0678427
ELL2 elongation factor, RNA polymerase II, 2 0.0667797
TM4SF1 transmembrane 4 L six family member 1 0.0645268
SRRM2 serine/arginine repetitive matrix 2 0.0626184
MKI67 marker of proliferation Ki-67 0.0626102
APLP2 amyloid beta (A4) precursor-like protein 2 0.0602835
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.05975
CSNK1A1 casein kinase 1, alpha 1 0.0590966
ANKRD11 ankyrin repeat domain 11 0.0580762
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0578899
PLEKHG2 pleckstrin homology domain containing, family G (with RhoGef domain) member 2 0.0575349
UBC ubiquitin C 0.0573426
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0547977
ZSWIM6 zinc finger, SWIM-type containing 6 0.0546809
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 0.0502089
LPP LIM domain containing preferred translocation partner in lipoma 0.0489032
JMJD1C jumonji domain containing 1C 0.0479215
UBASH3B ubiquitin associated and SH3 domain containing B 0.0475655
RPS12 ribosomal protein S12 0.0469001
ITGAV integrin, alpha V 0.0467967
EFNA5 ephrin-A5 0.0467628
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0463921
MCL1 myeloid cell leukemia 1 0.045676
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0456515
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0454836
PTK2 protein tyrosine kinase 2 0.0452077
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0451745
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0451606
SPRED2 sprouty-related, EVH1 domain containing 2 0.0450994
SMYD3 SET and MYND domain containing 3 0.0441762
ZNF780B zinc finger protein 780B 0.0437912
AHNAK2 AHNAK nucleoprotein 2 0.0437892
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0424383
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0413658
FLNA filamin A, alpha 0.0405825
DNMBP dynamin binding protein 0.0404727
SLC38A2 solute carrier family 38, member 2 0.0396155
EEF2 eukaryotic translation elongation factor 2 0.0394902
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0374482
THSD4 thrombospondin, type I, domain containing 4 0.0369318
HMGA2 high mobility group AT-hook 2 0.0364202
TRIP12 thyroid hormone receptor interactor 12 0.0363923
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 0.0361485
INTS6 integrator complex subunit 6 0.0356435
ZFAND3 zinc finger, AN1-type domain 3 0.0352489
NT5E 5'-nucleotidase, ecto (CD73) 0.0351857
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0344146
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 0.0343007
PDE10A phosphodiesterase 10A 0.03419
MYO1E myosin IE 0.0341492
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0338189
PAF1 Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) 0.0335943
IL6ST interleukin 6 signal transducer 0.0333612
MSN moesin 0.0330359
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0327913
PTPN14 protein tyrosine phosphatase, non-receptor type 14 0.0327586
DST dystonin 0.032528
ZFP36 ZFP36 ring finger protein 0.0324703
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.0323805
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 0.0323281
KLF7 Kruppel-like factor 7 (ubiquitous) 0.032305
EXOC6B exocyst complex component 6B 0.0321543
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0320268
CTTN cortactin 0.0317108
BIRC2 baculoviral IAP repeat containing 2 0.0316317
MYO10 myosin X 0.0314656
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0305988
SATB2 SATB homeobox 2 0.0301365
USP47 ubiquitin specific peptidase 47 0.0300424
ACTN4 actinin, alpha 4 0.029898
DDAH1 dimethylarginine dimethylaminohydrolase 1 0.0294643
ERBIN erbb2 interacting protein 0.0290733
EGR1 early growth response 1 0.0289656
ITGB5 integrin, beta 5 0.0288897
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.0288804
ZNF644 zinc finger protein 644 0.0287961
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0286845
DOCK5 dedicator of cytokinesis 5 0.028473
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 0.0281881
SFPQ splicing factor proline/glutamine-rich 0.0279792
MAP3K20 mitogen-activated protein kinase kinase kinase 20 0.0279496
PDLIM5 PDZ and LIM domain 5 0.0277994
LUZP1 leucine zipper protein 1 0.027793
HSPA8 heat shock 70kDa protein 8 0.0276513
NAP1L1 nucleosome assembly protein 1-like 1 0.027466
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.0274647
PDE4D phosphodiesterase 4D, cAMP-specific 0.0272984
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0272198

decreased expression

Symbol Name Standardized Value
RPS16 ribosomal protein S16 -0.110513
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0989114
RPL35A ribosomal protein L35a -0.079384
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0699803
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0694314
AHNAK AHNAK nucleoprotein -0.0688266
HSPG2 heparan sulfate proteoglycan 2 -0.0658484
EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 -0.054095
MYOF myoferlin -0.0505453
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0494715
LDHA lactate dehydrogenase A -0.0465566
RPLP1 ribosomal protein, large, P1 -0.0459265
CTSD cathepsin D -0.0400043
TRIO trio Rho guanine nucleotide exchange factor -0.0378698
PGK1 phosphoglycerate kinase 1 -0.0368163
HMGA1 high mobility group AT-hook 1 -0.035522
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0354698
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0352386
SEPTIN7 septin 7 -0.0345382
FBL fibrillarin -0.0314612
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0310139
S100A6 S100 calcium binding protein A6 -0.0307823
TMSB10 thymosin beta 10 -0.0305485
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0303698
RPS24 ribosomal protein S24 -0.0290768
PTMA prothymosin, alpha -0.028909
PDIA3 protein disulfide isomerase family A, member 3 -0.0288521
TNS3 tensin 3 -0.0286207
MORF4L2 mortality factor 4 like 2 -0.0276369
TMEM123 transmembrane protein 123 -0.0275431
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B -0.0251946
WDR45B WD repeat domain 45B -0.0248999
LOC112694756 uncharaterized LOC112694756 -0.0246044
TAPBP TAP binding protein (tapasin) -0.0242973
EGFR epidermal growth factor receptor -0.0239206
VDAC1 voltage-dependent anion channel 1 -0.0236964
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.023632
SMAD3 SMAD family member 3 -0.0233974
FTH1 ferritin, heavy polypeptide 1 -0.0233554
BIRC6 baculoviral IAP repeat containing 6 -0.0223307
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.0217883
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0217178
ANXA2 annexin A2 -0.0215792
GNAS GNAS complex locus -0.0213539
ZMYND8 zinc finger, MYND-type containing 8 -0.0213243
ACBD3 acyl-CoA binding domain containing 3 -0.0207972
SEPTIN9 septin 9 -0.0206745
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0205776
PPARG peroxisome proliferator-activated receptor gamma -0.0205393
HM13 histocompatibility (minor) 13 -0.0204991
ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 -0.0198658
CMIP c-Maf inducing protein -0.0198227
PDIA5 protein disulfide isomerase family A, member 5 -0.0196763
FOXO3 forkhead box O3 -0.0196741
MTCL1 microtubule crosslinking factor 1 -0.019672
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0191812
JPT2 Jupiter microtubule associated homolog 2 -0.0191248
MYBL1 v-myb avian myeloblastosis viral oncogene homolog-like 1 -0.0190031
ASNS asparagine synthetase (glutamine-hydrolyzing) -0.0186275
LMAN1 lectin, mannose-binding, 1 -0.0183922
RPS19 ribosomal protein S19 -0.0181458
RNF220 ring finger protein 220 -0.0180413
MRPS6 mitochondrial ribosomal protein S6 -0.0179825
DDIT4 DNA-damage-inducible transcript 4 -0.0179013
RAB1A RAB1A, member RAS oncogene family -0.0178152
TMEM165 transmembrane protein 165 -0.0177333
PERP PERP, TP53 apoptosis effector -0.0177245
ERGIC1 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 -0.0177102
CBL Cbl proto-oncogene, E3 ubiquitin protein ligase -0.0176354
SPINT2 serine peptidase inhibitor, Kunitz type, 2 -0.01748
RPS5 ribosomal protein S5 -0.0172983
IGF1R insulin-like growth factor 1 receptor -0.0172774
WSB1 WD repeat and SOCS box containing 1 -0.0169184
SUCO SUN domain containing ossification factor -0.0167096
CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 -0.015766
BZW2 basic leucine zipper and W2 domains 2 -0.0157431
SEC23IP SEC23 interacting protein -0.0156475
ATP5F1B ATP synthase F1 subunit beta -0.0155273
CRABP2 cellular retinoic acid binding protein 2 -0.015491
IFITM3 interferon induced transmembrane protein 3 -0.0154095
RPS13 ribosomal protein S13 -0.0153218
UGCG UDP-glucose ceramide glucosyltransferase -0.0152759
RAB1B RAB1B, member RAS oncogene family -0.0150851
SEC63 SEC63 homolog (S. cerevisiae) -0.014997
RPL11 ribosomal protein L11 -0.0146664
COPB2 coatomer protein complex, subunit beta 2 (beta prime) -0.0146607
ERLEC1 endoplasmic reticulum lectin 1 -0.0144894
CDK19 cyclin-dependent kinase 19 -0.0144251
DEK DEK proto-oncogene -0.0143606
SLCO4A1 solute carrier organic anion transporter family, member 4A1 -0.0143354
TUT4 terminal uridylyl transferase 4 -0.0143335
COPB1 coatomer protein complex, subunit beta 1 -0.0143091
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0142974
CD47 CD47 molecule -0.0141634
RPL4 ribosomal protein L4 -0.0141138
RPL28 ribosomal protein L28 -0.0141118
SPDYA speedy/RINGO cell cycle regulator family member A -0.0140562
SEPTIN2 septin 2 -0.014028
MFGE8 milk fat globule-EGF factor 8 protein -0.0140023
ARID4B AT rich interactive domain 4B (RBP1-like) -0.0139541