Pyridoxine (hydrochloride)_Panc 03.27 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Pyridoxine (hydrochloride) perturbation in Panc 03.27 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Pyridoxine (hydrochloride)_Panc 03.27 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.101406
LAMA4 laminin, alpha 4 0.0930486
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0828307
MUC16 mucin 16, cell surface associated 0.079408
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0703227
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0702228
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0681078
C3 complement component 3 0.06186
PCLO piccolo presynaptic cytomatrix protein 0.0581274
MKI67 marker of proliferation Ki-67 0.0565093
TOP2A topoisomerase (DNA) II alpha 170kDa 0.052638
MX1 MX dynamin-like GTPase 1 0.0516726
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.0485096
MACF1 microtubule-actin crosslinking factor 1 0.0480574
APLP2 amyloid beta (A4) precursor-like protein 2 0.0477674
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0473848
DST dystonin 0.0465132
DSPP dentin sialophosphoprotein 0.0458722
MAL2 mal, T-cell differentiation protein 2 (gene/pseudogene) 0.045304
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0451874
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0443167
TNFRSF21 tumor necrosis factor receptor superfamily, member 21 0.042959
SRRM2 serine/arginine repetitive matrix 2 0.0422571
CCNL1 cyclin L1 0.0414999
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0413079
TXNRD1 thioredoxin reductase 1 0.0409334
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0407481
ENO1 enolase 1, (alpha) 0.0400945
RASAL2 RAS protein activator like 2 0.0396919
ARHGAP26 Rho GTPase activating protein 26 0.0389937
THBS1 thrombospondin 1 0.0388401
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.0386572
VMP1 vacuole membrane protein 1 0.0375688
IFI27 interferon, alpha-inducible protein 27 0.0369497
FHIT fragile histidine triad 0.0350354
ITGA6 integrin, alpha 6 0.0349966
SLC38A2 solute carrier family 38, member 2 0.0349265
AREG amphiregulin 0.0347586
TXNIP thioredoxin interacting protein 0.0344352
TGM2 transglutaminase 2 0.0339723
FLNA filamin A, alpha 0.0335377
CD44 CD44 molecule (Indian blood group) 0.0334218
MYH9 myosin, heavy chain 9, non-muscle 0.0327183
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0321672
EHF ets homologous factor 0.0313031
MACC1 metastasis associated in colon cancer 1 0.0310929
ANK3 ankyrin 3, node of Ranvier (ankyrin G) 0.0305773
CALR calreticulin 0.0292244
IFI44L interferon-induced protein 44-like 0.0291186
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0289457
PCDH1 protocadherin 1 0.0286489
LAMB1 laminin, beta 1 0.0285629
ACTN1 actinin, alpha 1 0.0284626
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0282905
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0282418
EEF2 eukaryotic translation elongation factor 2 0.027732
SMOC1 SPARC related modular calcium binding 1 0.0272021
TPM3 tropomyosin 3 0.0263039
IFIT1 interferon-induced protein with tetratricopeptide repeats 1 0.0260116
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.0257105
IL6ST interleukin 6 signal transducer 0.025608
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0252894
EIF5 eukaryotic translation initiation factor 5 0.0251635
AHR aryl hydrocarbon receptor 0.025028
ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 0.0249719
EHBP1 EH domain binding protein 1 0.0246065
ERC1 ELKS/RAB6-interacting/CAST family member 1 0.0244953
TACSTD2 tumor-associated calcium signal transducer 2 0.0244806
GPHN gephyrin 0.0244661
SET SET nuclear proto-oncogene 0.0242121
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 0.0236782
CENPF centromere protein F, 350/400kDa 0.0233799
EFNA5 ephrin-A5 0.0230304
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.0227792
MX2 MX dynamin-like GTPase 2 0.0223975
CAPRIN1 cell cycle associated protein 1 0.0221209
RNF213 ring finger protein 213 0.0220272
KRT18 keratin 18, type I 0.0216916
DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1 0.0216789
PRELID2 PRELI domain containing 2 0.0215575
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0214441
TRIP12 thyroid hormone receptor interactor 12 0.0213905
RPL21 ribosomal protein L21 0.0212857
SLTM SAFB-like, transcription modulator 0.0212723
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 0.0210835
STK17B serine/threonine kinase 17b 0.0210671
DTX3L deltex 3 like, E3 ubiquitin ligase 0.0210165
BPTF bromodomain PHD finger transcription factor 0.0205405
PNN pinin, desmosome associated protein 0.0204888
HSPA8 heat shock 70kDa protein 8 0.0203552
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 0.020245
SFTPA2 surfactant protein A2 0.0198195
RBMS2 RNA binding motif, single stranded interacting protein 2 0.0197667
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0194738
SGMS2 sphingomyelin synthase 2 0.019307
SMC1A structural maintenance of chromosomes 1A 0.0191182
PLK2 polo-like kinase 2 0.0190963
ANXA1 annexin A1 0.0190838
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa 0.019076
RIMKLB ribosomal modification protein rimK-like family member B 0.0188885

decreased expression

Symbol Name Standardized Value
LAMB3 laminin, beta 3 -0.176232
TPT1 tumor protein, translationally-controlled 1 -0.169338
PTMA prothymosin, alpha -0.143468
RPL35A ribosomal protein L35a -0.131659
HMGA1 high mobility group AT-hook 1 -0.124095
ACTG1 actin gamma 1 -0.115042
TMSB10 thymosin beta 10 -0.107524
MYO6 myosin VI -0.102326
TMSB4X thymosin beta 4, X-linked -0.100866
F3 coagulation factor III (thromboplastin, tissue factor) -0.0976753
FUT8 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) -0.0928972
HLA-B major histocompatibility complex, class I, B -0.0865641
RPLP1 ribosomal protein, large, P1 -0.081533
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0791803
HLA-E major histocompatibility complex, class I, E -0.0756803
RPL34 ribosomal protein L34 -0.070278
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0662212
NPEPPS aminopeptidase puromycin sensitive -0.0659044
FTH1 ferritin, heavy polypeptide 1 -0.0643376
TPM4 tropomyosin 4 -0.0639208
RPS6 ribosomal protein S6 -0.0625569
KRT7 keratin 7, type II -0.0611791
RPS8 ribosomal protein S8 -0.0606275
RPS24 ribosomal protein S24 -0.0596999
EIF1 eukaryotic translation initiation factor 1 -0.0594685
KLF5 Kruppel-like factor 5 (intestinal) -0.0589304
NDRG1 N-myc downstream regulated 1 -0.058625
RIOK3 RIO kinase 3 -0.0567577
GNAS GNAS complex locus -0.0566731
RPS19 ribosomal protein S19 -0.0561801
KRT17 keratin 17, type I -0.055541
DLG1 discs, large homolog 1 (Drosophila) -0.054785
ANXA2 annexin A2 -0.0538384
KDM3A lysine (K)-specific demethylase 3A -0.0536716
UGCG UDP-glucose ceramide glucosyltransferase -0.0531682
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0523543
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 -0.0516867
ARHGEF28 Rho guanine nucleotide exchange factor (GEF) 28 -0.0501064
RPS29 ribosomal protein S29 -0.0498584
EPS8 epidermal growth factor receptor pathway substrate 8 -0.049539
LDHA lactate dehydrogenase A -0.0489768
MAML2 mastermind-like 2 (Drosophila) -0.0489435
SYT14 synaptotagmin XIV -0.0484118
WSB1 WD repeat and SOCS box containing 1 -0.048334
FOXO3 forkhead box O3 -0.0480672
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0470427
ZFAND3 zinc finger, AN1-type domain 3 -0.046776
SQSTM1 sequestosome 1 -0.0453578
FNDC3B fibronectin type III domain containing 3B -0.0451183
MEF2A myocyte enhancer factor 2A -0.0434327
MBOAT2 membrane bound O-acyltransferase domain containing 2 -0.0431729
WFDC2 WAP four-disulfide core domain 2 -0.0424495
RPL31 ribosomal protein L31 -0.0422416
LMO7 LIM domain 7 -0.0419792
RPL23 ribosomal protein L23 -0.0413568
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0410492
LOC112694756 uncharaterized LOC112694756 -0.0407863
SOX4 SRY (sex determining region Y)-box 4 -0.0407607
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0406444
DAPK1 death-associated protein kinase 1 -0.0406322
MINDY2 MINDY lysine 48 deubiquitinase 2 -0.0400183
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.0398379
ARHGEF3 Rho guanine nucleotide exchange factor (GEF) 3 -0.039583
RPL37A ribosomal protein L37a -0.0395449
ARID4B AT rich interactive domain 4B (RBP1-like) -0.0395084
RPL37 ribosomal protein L37 -0.0392063
RPL8 ribosomal protein L8 -0.0387735
NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 -0.0385475
RAB1A RAB1A, member RAS oncogene family -0.0383036
DSG2 desmoglein 2 -0.0379006
HLA-C major histocompatibility complex, class I, C -0.0377383
CD47 CD47 molecule -0.0369121
AHNAK AHNAK nucleoprotein -0.0368878
ASS1 argininosuccinate synthase 1 -0.0368709
RPL12 ribosomal protein L12 -0.0367585
LASP1 LIM and SH3 protein 1 -0.0366736
RPL30 ribosomal protein L30 -0.0363628
KDM5B lysine (K)-specific demethylase 5B -0.0358168
JARID2 jumonji, AT rich interactive domain 2 -0.035711
PRRC2C proline-rich coiled-coil 2C -0.0349629
C6ORF132 chromosome 6 open reading frame 132 -0.0349389
RAB11FIP1 RAB11 family interacting protein 1 (class I) -0.0345026
ERBIN erbb2 interacting protein -0.0343424
MAP3K13 mitogen-activated protein kinase kinase kinase 13 -0.0340561
RPL26 ribosomal protein L26 -0.0339518
FN1 fibronectin 1 -0.0336727
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0336367
PDLIM5 PDZ and LIM domain 5 -0.0335901
RPS21 ribosomal protein S21 -0.0335095
RPS23 ribosomal protein S23 -0.0333269
ESYT2 extended synaptotagmin-like protein 2 -0.0329806
CD2AP CD2-associated protein -0.0328905
ANKRD10 ankyrin repeat domain 10 -0.0328174
COPB2 coatomer protein complex, subunit beta 2 (beta prime) -0.0326475
ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains) -0.0323061
BACE2 beta-site APP-cleaving enzyme 2 -0.0322622
KLF6 Kruppel-like factor 6 -0.0322067
B2M beta-2-microglobulin -0.0316995
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.031681
IGFBP3 insulin-like growth factor binding protein 3 -0.0315542