Pyridoxine (hydrochloride)_hTERT-HPNE Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Pyridoxine (hydrochloride) perturbation in hTERT-HPNE cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Pyridoxine (hydrochloride)_hTERT-HPNE drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
CD44 CD44 molecule (Indian blood group) 0.151363
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.132296
AKAP12 A kinase (PRKA) anchor protein 12 0.112356
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.103211
FN1 fibronectin 1 0.0848266
MYH9 myosin, heavy chain 9, non-muscle 0.0822274
PDE3A phosphodiesterase 3A, cGMP-inhibited 0.0785921
ASPH aspartate beta-hydroxylase 0.0692295
MYO10 myosin X 0.0676819
VCL vinculin 0.0644425
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0608108
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0606363
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0580909
TIMP1 TIMP metallopeptidase inhibitor 1 0.0564646
LOX lysyl oxidase 0.0489015
SPTBN1 spectrin, beta, non-erythrocytic 1 0.047195
FLNA filamin A, alpha 0.0426609
GLIS3 GLIS family zinc finger 3 0.0425641
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.0413619
SPRED2 sprouty-related, EVH1 domain containing 2 0.0401218
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.0389347
EMP1 epithelial membrane protein 1 0.0382263
EEF2 eukaryotic translation elongation factor 2 0.037682
ZSWIM6 zinc finger, SWIM-type containing 6 0.0370053
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0361921
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.035503
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0353205
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0337049
SRRM2 serine/arginine repetitive matrix 2 0.0336914
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0332524
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0314171
ARHGAP31 Rho GTPase activating protein 31 0.0301684
COL6A3 collagen, type VI, alpha 3 0.0301659
HSPA8 heat shock 70kDa protein 8 0.0275258
WNT2B wingless-type MMTV integration site family, member 2B 0.0266828
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.026488
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) 0.0256645
WWTR1 WW domain containing transcription regulator 1 0.0255225
SLIT2 slit homolog 2 (Drosophila) 0.0253244
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 0.0247511
ITGA11 integrin, alpha 11 0.024637
GFPT2 glutamine-fructose-6-phosphate transaminase 2 0.0246215
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0244411
HMGA2 high mobility group AT-hook 2 0.0244168
UBC ubiquitin C 0.0240269
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.023789
EGR1 early growth response 1 0.0231489
MSN moesin 0.0230365
RALY RALY heterogeneous nuclear ribonucleoprotein 0.0226046
MAP1B microtubule-associated protein 1B 0.0224507
TOP1 topoisomerase (DNA) I 0.0223956
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0218311
MACF1 microtubule-actin crosslinking factor 1 0.0209016
HBEGF heparin-binding EGF-like growth factor 0.020846
DSPP dentin sialophosphoprotein 0.0202705
BRD2 bromodomain containing 2 0.0201921
TLN1 talin 1 0.0193562
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0193425
TPM3 tropomyosin 3 0.0191543
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0186089
INTS6 integrator complex subunit 6 0.017951
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0178104
EXT1 exostosin glycosyltransferase 1 0.0174414
RPS12 ribosomal protein S12 0.0171508
TRIP12 thyroid hormone receptor interactor 12 0.0171355
PHC2 polyhomeotic homolog 2 (Drosophila) 0.0170882
ANO6 anoctamin 6 0.0168343
SET SET nuclear proto-oncogene 0.0166646
SDCCAG8 serologically defined colon cancer antigen 8 0.0165013
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0164461
LHFPL2 lipoma HMGIC fusion partner-like 2 0.0161849
EIF5 eukaryotic translation initiation factor 5 0.0160142
AMOTL1 angiomotin like 1 0.0159423
STC1 stanniocalcin 1 0.0158836
ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 0.0156705
RNF152 ring finger protein 152 0.0155563
IGF2 insulin-like growth factor 2 0.0154332
ACTR3 ARP3 actin-related protein 3 homolog (yeast) 0.0152592
RAB31 RAB31, member RAS oncogene family 0.0151953
APLP2 amyloid beta (A4) precursor-like protein 2 0.015184
IGFBP7 insulin-like growth factor binding protein 7 0.015183
CAPRIN2 caprin family member 2 0.0151275
BAZ1A bromodomain adjacent to zinc finger domain, 1A 0.0150939
MTAP methylthioadenosine phosphorylase 0.0149963
SLC38A2 solute carrier family 38, member 2 0.0147716
CLIP2 CAP-GLY domain containing linker protein 2 0.0147317
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0146532
TXNIP thioredoxin interacting protein 0.0145489
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 0.0145272
EGFR epidermal growth factor receptor 0.0144561
TUT7 terminal uridylyl transferase 7 0.0144458
FERMT2 fermitin family member 2 0.0144453
EPB41L2 erythrocyte membrane protein band 4.1-like 2 0.0143104
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.0142785
ERBIN erbb2 interacting protein 0.0141117
HOMER1 homer scaffolding protein 1 0.0141049
KMT2E lysine (K)-specific methyltransferase 2E 0.014073
C1D C1D nuclear receptor corepressor 0.0139728
NOTCH2 notch 2 0.0138827
CUL3 cullin 3 0.0137972

decreased expression

Symbol Name Standardized Value
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.25001
VIM vimentin -0.181466
PRKG1 protein kinase, cGMP-dependent, type I -0.153096
PAPPA pregnancy-associated plasma protein A, pappalysin 1 -0.143899
MMP1 matrix metallopeptidase 1 -0.134941
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.13384
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.119731
COL1A1 collagen, type I, alpha 1 -0.111994
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0951877
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0933307
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type -0.0931324
NDRG1 N-myc downstream regulated 1 -0.089713
TRIO trio Rho guanine nucleotide exchange factor -0.0874565
TMSB10 thymosin beta 10 -0.0855904
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0827784
HLA-B major histocompatibility complex, class I, B -0.078793
OXR1 oxidation resistance 1 -0.0768402
TMEM165 transmembrane protein 165 -0.0748381
CDH13 cadherin 13 -0.0725148
MMP12 matrix metallopeptidase 12 -0.0724956
GREM1 gremlin 1, DAN family BMP antagonist -0.0715339
COL6A2 collagen, type VI, alpha 2 -0.0709612
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 -0.070757
B2M beta-2-microglobulin -0.0672323
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit -0.0620755
AHNAK AHNAK nucleoprotein -0.06148
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.06019
SIPA1L3 signal-induced proliferation-associated 1 like 3 -0.0583514
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats -0.0579665
GOLGA4 golgin A4 -0.0559891
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.0548616
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.0529944
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 -0.0519548
SGIP1 SH3-domain GRB2-like (endophilin) interacting protein 1 -0.0517235
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0511049
LMAN1 lectin, mannose-binding, 1 -0.0497449
COL6A1 collagen, type VI, alpha 1 -0.0491875
FNDC3B fibronectin type III domain containing 3B -0.0472504
TTC3 tetratricopeptide repeat domain 3 -0.0466015
RPLP1 ribosomal protein, large, P1 -0.0459209
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0446614
RPL35A ribosomal protein L35a -0.0435257
ZCCHC7 zinc finger, CCHC domain containing 7 -0.0427606
FAM13A family with sequence similarity 13, member A -0.0417702
FTL ferritin, light polypeptide -0.0415167
SLC8A1 solute carrier family 8 (sodium/calcium exchanger), member 1 -0.041475
WSB1 WD repeat and SOCS box containing 1 -0.0412998
LDHA lactate dehydrogenase A -0.0406669
ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 -0.0395319
COL5A2 collagen, type V, alpha 2 -0.0392124
ADAMTS16 ADAM metallopeptidase with thrombospondin type 1 motif, 16 -0.0388001
NCKAP5 NCK-associated protein 5 -0.0383934
ATP13A3 ATPase type 13A3 -0.0383562
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0381146
NBEAL1 neurobeachin-like 1 -0.0375436
RAB1A RAB1A, member RAS oncogene family -0.0375101
PRRX1 paired related homeobox 1 -0.037039
FRMPD4 FERM and PDZ domain containing 4 -0.0369398
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0368931
TIMP2 TIMP metallopeptidase inhibitor 2 -0.0361204
S100A6 S100 calcium binding protein A6 -0.0359527
TGFBI transforming growth factor, beta-induced, 68kDa -0.0358269
ASCC3 activating signal cointegrator 1 complex subunit 3 -0.0355195
AFF3 AF4/FMR2 family, member 3 -0.0350633
TPM4 tropomyosin 4 -0.0350378
MEIS1 Meis homeobox 1 -0.0350269
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 -0.0348214
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0347161
NAMPT nicotinamide phosphoribosyltransferase -0.0340284
CEMIP cell migration inducing protein, hyaluronan binding -0.0331859
HDLBP high density lipoprotein binding protein -0.0330164
JARID2 jumonji, AT rich interactive domain 2 -0.0324316
ADAM9 ADAM metallopeptidase domain 9 -0.0322378
RPL34 ribosomal protein L34 -0.031984
NREP neuronal regeneration related protein -0.0317816
NPTX1 neuronal pentraxin I -0.0315523
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0312274
FOXP1 forkhead box P1 -0.0311063
KIAA1549L KIAA1549-like -0.0308749
ELL2 elongation factor, RNA polymerase II, 2 -0.0304608
HELZ helicase with zinc finger -0.0304124
LGALS1 lectin, galactoside-binding, soluble, 1 -0.0303112
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0301327
PDIA3 protein disulfide isomerase family A, member 3 -0.0299887
COL5A1 collagen, type V, alpha 1 -0.0299153
NAV2 neuron navigator 2 -0.0296244
LCORL ligand dependent nuclear receptor corepressor-like -0.0295544
RND3 Rho family GTPase 3 -0.0294056
SASH1 SAM and SH3 domain containing 1 -0.0291101
CDC27 cell division cycle 27 -0.0290534
P4HA2 prolyl 4-hydroxylase, alpha polypeptide II -0.0289354
ZBTB38 zinc finger and BTB domain containing 38 -0.0278788
PGK1 phosphoglycerate kinase 1 -0.027871
DDR2 discoidin domain receptor tyrosine kinase 2 -0.0278549
SORBS2 sorbin and SH3 domain containing 2 -0.0274848
DLC1 DLC1 Rho GTPase activating protein -0.0270964
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0270688
SEC24D SEC24 family member D -0.0268747
NGLY1 N-glycanase 1 -0.0268376
PTPRG protein tyrosine phosphatase, receptor type, G -0.0264799